EWM25988.1, cds4693 (CDS) Nannochloropsis gaditana

Overview
NameEWM25988.1
Unique Namecds4693
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:120557..120652 +
Alignment locationCM002464.1:121226..121318 +
Alignment locationCM002464.1:121373..121631 +
Alignment locationCM002464.1:121802..121902 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25988.1
Productcytochrome c oxidase copper chaperone
Orig transcript idgnl|cribi|Naga_100151g2.9622.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:120557..120652 +
CM002464.1supercontigCM002464.1:121226..121318 +
CM002464.1supercontigCM002464.1:121373..121631 +
CM002464.1supercontigCM002464.1:121802..121902 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006825copper ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0016531copper chaperone activity
GO:0005507copper ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0005758mitochondrial intermembrane space
Vocabulary: INTERPRO
TermDefinition
IPR009069Cys_alpha_HP_mot_SF
IPR007745Cyt_c_oxidase_Cu-chaperone
Homology
[Close]
BLAST of EWM25988.1 vs. NCBI_GenBank
Match: gi|585107889|gb|EWM25988.1| (cytochrome c oxidase copper chaperone [Nannochloropsis gaditana])

HSP 1 Score: 372.474 bits (955), Expect = 1.554e-130
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0 
Query:    1 MGTKASKPVEAEQPKLGKSGKKICCSCPDTKKIRDECVVNKGEEACADAIEAHKACLRAEGFKTVTPGHASLNNLSFVSWPAVQRVRKRRRMTEGFWDSFLAMVASHLESTKKATKGGKPSDDFGPAKKRGIYVPRKEGRACLKRGKKGAEGFLANEVTTPKAIASKTPQHAGGLMGNTGVG 182
            MGTKASKPVEAEQPKLGKSGKKICCSCPDTKKIRDECVVNKGEEACADAIEAHKACLRAEGFKTVTPGHASLNNLSFVSWPAVQRVRKRRRMTEGFWDSFLAMVASHLESTKKATKGGKPSDDFGPAKKRGIYVPRKEGRACLKRGKKGAEGFLANEVTTPKAIASKTPQHAGGLMGNTGVG
Sbjct:    1 MGTKASKPVEAEQPKLGKSGKKICCSCPDTKKIRDECVVNKGEEACADAIEAHKACLRAEGFKTVTPGHASLNNLSFVSWPAVQRVRKRRRMTEGFWDSFLAMVASHLESTKKATKGGKPSDDFGPAKKRGIYVPRKEGRACLKRGKKGAEGFLANEVTTPKAIASKTPQHAGGLMGNTGVG 182
[Close]
BLAST of EWM25988.1 vs. NCBI_GenBank
Match: gi|698779783|ref|XP_009822935.1| (hypothetical protein H257_01436 [Aphanomyces astaci] >gi|574122596|gb|ETV88072.1| hypothetical protein H257_01436 [Aphanomyces astaci])

HSP 1 Score: 89.7373 bits (221), Expect = 1.088e-20
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 0 
Query:   11 AEQPKLGKSGKKICCSCPDTKKIRDECVVNKGEEACADAIEAHKACLRAEGFKT 64
            A  P LGKSGK+ICCSCPDTK +RD CV+N GEE CAD IEAHK CLRAEGFK 
Sbjct:    8 AAAPILGKSGKRICCSCPDTKSVRDLCVLNNGEENCADVIEAHKQCLRAEGFKV 61
[Close]
BLAST of EWM25988.1 vs. NCBI_GenBank
Match: gi|1173948971|gb|OQR97049.1| (hypothetical protein ACHHYP_20633 [Achlya hypogyna])

HSP 1 Score: 90.1225 bits (222), Expect = 1.255e-20
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 0 
Query:   14 PKLGKSGKKICCSCPDTKKIRDECVVNKGEEACADAIEAHKACLRAEGFKT 64
            P LGKSGKKICCSCP+TK +RD CV+NKGEE CAD IEAHK CLRAEGF+ 
Sbjct:   25 PVLGKSGKKICCSCPETKSVRDLCVINKGEENCADVIEAHKQCLRAEGFRV 75
[Close]
BLAST of EWM25988.1 vs. NCBI_GenBank
Match: gi|813164756|ref|XP_012203438.1| (hypothetical protein SPRG_08819 [Saprolegnia parasitica CBS 223.65] >gi|641531823|gb|KDO25877.1| hypothetical protein SPRG_08819 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 85.8853 bits (211), Expect = 3.745e-19
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0 
Query:   14 PKLGKSGKKICCSCPDTKKIRDECVVNKGEEACADAIEAHKACLRAEGFKT 64
            P +GKSGKKICCSCP+TK +RD CV++KGEE CAD IEAHK CLRAEGF+ 
Sbjct:    7 PVVGKSGKKICCSCPETKSVRDLCVISKGEEHCADVIEAHKQCLRAEGFRI 57
[Close]
BLAST of EWM25988.1 vs. NCBI_GenBank
Match: gi|669164912|ref|XP_008618018.1| (cytochrome c oxidase assembly protein subunit 17 [Saprolegnia diclina VS20] >gi|530730379|gb|EQC28621.1| cytochrome c oxidase assembly protein subunit 17 [Saprolegnia diclina VS20])

HSP 1 Score: 85.1149 bits (209), Expect = 7.029e-19
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 0 
Query:   14 PKLGKSGKKICCSCPDTKKIRDECVVNKGEEACADAIEAHKACLRAEGFKT 64
            P +GKSGKKICCSCP+TK +RD CV++KGEE CAD IEAHK CLRAEGF+ 
Sbjct:    7 PVVGKSGKKICCSCPETKSVRDLCVISKGEEHCADVIEAHKQCLRAEGFRI 57
[Close]
BLAST of EWM25988.1 vs. NCBI_GenBank
Match: gi|1173952701|gb|OQS00316.1| (hypothetical protein THRCLA_21702 [Thraustotheca clavata])

HSP 1 Score: 84.7297 bits (208), Expect = 9.964e-19
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0 
Query:   14 PKLGKSGKKICCSCPDTKKIRDECVVNKGEEACADAIEAHKACLRAEGFKT 64
            P +GKSGK+ICCSCP+TK  RD CV+NKGEE CAD IEAHK CLRAEGF+ 
Sbjct:    8 PVVGKSGKRICCSCPETKSARDLCVINKGEENCADVIEAHKQCLRAEGFRI 58
[Close]
BLAST of EWM25988.1 vs. NCBI_GenBank
Match: gi|695415932|ref|XP_009526708.1| (hypothetical protein PHYSODRAFT_285957 [Phytophthora sojae] >gi|348677833|gb|EGZ17650.1| hypothetical protein PHYSODRAFT_285957 [Phytophthora sojae])

HSP 1 Score: 84.3445 bits (207), Expect = 2.013e-18
Identity = 41/62 (66.13%), Postives = 44/62 (70.97%), Query Frame = 0 
Query:    1 MGTKASKPVEAEQPKLGKSGKKICCSCPDTKKIRDECVVNKGEEACADAIEAHKACLRAEGF 62
            M  K       E P LGKSGKKICCSCP TK+ RD C+VN GEE C D IEAHKACLR+EGF
Sbjct:    1 MAEKECTATVKEGPVLGKSGKKICCSCPTTKQARDLCIVNNGEEHCKDIIEAHKACLRSEGF 62
[Close]
BLAST of EWM25988.1 vs. NCBI_GenBank
Match: gi|570983963|gb|ETP43686.1| (hypothetical protein F442_09638 [Phytophthora parasitica P10297])

HSP 1 Score: 82.8037 bits (203), Expect = 6.524e-18
Identity = 38/52 (73.08%), Postives = 41/52 (78.85%), Query Frame = 0 
Query:   11 AEQPKLGKSGKKICCSCPDTKKIRDECVVNKGEEACADAIEAHKACLRAEGF 62
             E P LGKSGKKICCSCP TK+ RD C+VN GEE C D IEAHK CLR+EGF
Sbjct:   11 TEGPVLGKSGKKICCSCPTTKQARDLCIVNNGEENCKDIIEAHKVCLRSEGF 62
[Close]
BLAST of EWM25988.1 vs. NCBI_GenBank
Match: gi|675167719|ref|XP_008892744.1| (hypothetical protein PPTG_01259 [Phytophthora parasitica INRA-310] >gi|568106258|gb|ETN20888.1| hypothetical protein PPTG_01259 [Phytophthora parasitica INRA-310])

HSP 1 Score: 82.8037 bits (203), Expect = 6.739e-18
Identity = 38/52 (73.08%), Postives = 41/52 (78.85%), Query Frame = 0 
Query:   11 AEQPKLGKSGKKICCSCPDTKKIRDECVVNKGEEACADAIEAHKACLRAEGF 62
             E P LGKSGKKICCSCP TK+ RD C+VN GEE C D IEAHK CLR+EGF
Sbjct:   11 TEGPVLGKSGKKICCSCPTTKQARDLCIVNNGEENCKDIIEAHKVCLRSEGF 62
[Close]
BLAST of EWM25988.1 vs. NCBI_GenBank
Match: gi|566022888|gb|ETI45799.1| (hypothetical protein F443_09737 [Phytophthora parasitica P1569] >gi|567960187|gb|ETK85751.1| hypothetical protein L915_09529 [Phytophthora parasitica] >gi|567988910|gb|ETL39180.1| hypothetical protein L916_09431 [Phytophthora parasitica] >gi|568018108|gb|ETL92285.1| hypothetical protein L917_09369 [Phytophthora parasitica] >gi|568048552|gb|ETM45596.1| hypothetical protein L914_09396 [Phytophthora parasitica] >gi|570326510|gb|ETO74458.1| hypothetical protein F444_09802 [Phytophthora parasitica P1976] >gi|570950382|gb|ETP15639.1| hypothetical protein F441_09670 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 82.8037 bits (203), Expect = 7.753e-18
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0 
Query:   12 EQPKLGKSGKKICCSCPDTKKIRDECVVNKGEEACADAIEAHKACLRAEGF 62
            E P LGKSGKKICCSCP TK+ RD C+VN GEE C D IEAHK CLR+EGF
Sbjct:   12 EGPVLGKSGKKICCSCPTTKQARDLCIVNNGEENCKDIIEAHKVCLRSEGF 62
The following BLAST results are available for this feature:
BLAST of EWM25988.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107889|gb|EWM25988.1|1.554e-130100.00cytochrome c oxidase copper chaperone [Nannochloro... [more]
gi|698779783|ref|XP_009822935.1|1.088e-2075.93hypothetical protein H257_01436 [Aphanomyces astac... [more]
gi|1173948971|gb|OQR97049.1|1.255e-2078.43hypothetical protein ACHHYP_20633 [Achlya hypogyna... [more]
gi|813164756|ref|XP_012203438.1|3.745e-1974.51hypothetical protein SPRG_08819 [Saprolegnia paras... [more]
gi|669164912|ref|XP_008618018.1|7.029e-1974.51cytochrome c oxidase assembly protein subunit 17 [... [more]
gi|1173952701|gb|OQS00316.1|9.964e-1974.51hypothetical protein THRCLA_21702 [Thraustotheca c... [more]
gi|695415932|ref|XP_009526708.1|2.013e-1866.13hypothetical protein PHYSODRAFT_285957 [Phytophtho... [more]
gi|570983963|gb|ETP43686.1|6.524e-1873.08hypothetical protein F442_09638 [Phytophthora para... [more]
gi|675167719|ref|XP_008892744.1|6.739e-1873.08hypothetical protein PPTG_01259 [Phytophthora para... [more]
gi|566022888|gb|ETI45799.1|7.753e-1874.51hypothetical protein F443_09737 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4705rna4705Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications