rna4693, rna4693 (mRNA) Nannochloropsis gaditana

Overview
Namerna4693
Unique Namerna4693
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2425
Alignment locationCM002464.1:86758..87570 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100151g13.9614.mrna
Orig protein idgnl|cribi|Naga_100151g13.9614
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:86758..87570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100151g13gene4532Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4693rna4693-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25980.1cds4681Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4693 ID=rna4693|Name=rna4693|organism=Nannochloropsis gaditana|type=mRNA|length=2425bp
ACTAAAGGCACCACCGTCCTTCCTTCCCATCCGGCAAAGGCGCAGGAGAT
ATTTATTCGCATCTTCAAAGAAAGGGGTATTGACGTACACACCCAAGCAG
AGGCCGTAACCGTGAAAGAGGATCCCTCCCCTCCTTCTTCTCAACCTTCC
TCGACCCCGGCCGCGTTTGCCCGGCTCAACGTACTGCACACCAAGGATGG
GCGCTCTTTCCCTTACCATGAATGTGTCTGGTGTACCGAGGGGCAAGCTG
CCCCCTGGCTGATGAAGACAGGCTTGACTTTGGACGAAAAGGGCTTCCTT
GCAGTCAATCGCCACCTGCAGTCTGTTTCTGATCCCTACGTTTTTGCCGC
CGGCGATGTCTCCTCCATGCTGGAAAACCCTCGGCCGAAGGCTGGTGTTT
TCGCCGTGCGGGCTGGACCTCCTCTGCTCAGAAACTTGCAGAATGCATTG
CGAGGCGCCACGCTTGCGACGTATACGCCGCAGTCGACTTTCCTCTCCCT
CATCTCCACGGGAGATAAATATGCTATCGCCTCGAAAGGGTCGGTCTTCG
TATTGGAAGGAGCATGGTTATGGAAGATGAAGGACCACATCGATCGGAAA
TTCATGCGGATGTATCAGGACCTACCGTCCATGGACCCGTCCACCTCCTC
GTCCTCCCCTCCCTTTTCCCTGTCCGCTCTCTCCTCCTTCTTTACTCCTT
CCCACCCTCCCAATCCCTCCGACCCCGGGTCTTCTCCTGGGGAAGCAGCG
ACCTCTGTTCATTCCCATACCATGCGCTGCGGAGGCTGCGGGTCCAAGGT
GGGAGCCTCTATCCTCTCTCGGGTATTGTCTCGCATCGAACAGTCCCACT
CGTGCAACGAGGACATCCTCCTCGGCATGGGGGATGACGCGGCTGTCTTC
CGTCCGCCTCCTCCTCCCCTTCTGCAAATTCAGACTCTCGACTTCTTCCG
CATCTTCTTCCCGCGCTTCGACCCCTACGTCTTTGGTCAAATTGCCGCCA
ACCACGCCCTCTCTGATTGCCATGCTATGAACGCACGACCTCGGACGGCA
TTGGCCCAGGCGGTCGTCCCCCTCGCTGCCAGTGAGAAGCTCACGGAGGG
TCTCCTGCTCCAGCTATTGGCGGGAGCAGTGCAGGTGCTGAACGCTGCCG
GTTGTACCCTCGTCGGCGGCCACACATCGGAAGGCACTGAGCTTACCCTG
GGCTTTGCTATCACGGGCGAAGCTCACCCCTCGCAGCTCCTTTACAAAAA
GGGGATCTTACGCAACTCTTCACACCTCAAGAACGATGAGGAAGAATCCG
AGGACGTAAAGAGAAGGAGGCTTGATGGGATGACAAGGATGAGCCCTGGT
CGATCACTTTCTCGCGCGTCCTCCCCCTCGACGTCCTTTGCTCCTGTCCC
CACTTTCTCCTTGCTTTTGACGAAAGCCTTGGGTACAGGGACGATTATGG
CAGCGGCAGGCCAGGGGCAAGGGAGCGCCAAGTGGGAAGCAGGAGCCGTA
GCTTCGATGCTTCAGTCCAACGCAAAAGCCGCCGATATTTTATGGAGGGA
AGGAGGAGCCATCGCTGCGACGGATGTGACAGGCTTTGGGGTACTGGGTC
ATTTGACGGAGATGATAAGAGGGGATAACGGAATGGTGGGTGAAGATAAC
CTTTTAACAACTGCTGGAACAGGACAGGAGGGCGGGGTGCGAGCTCGCTT
AATCCTTTCTTCCCTCCCAGCTTTGCCCGGCGCTGAGGACTGTCTTGCCA
AGGGTATCACTTCCTCTCTCGCCCCTGCCAACCAGCACCATGCCCGTCAT
CTCCTTCGGAATGTCTCCACTGTCGCACATAGCAACACGAGCAGCTTAAG
ACAGCATTCAAAGTACCCACTGCTTTTTGATCCGCAGACGGCAGGAGGGC
TACTGGCGTGCGTGCCAGTGGACAAAGTGGGAATAACGCTTCATGCCCTT
CAGGCTGCAGGTTATGAGGCAGCCTGTGTTATTGGTGAAGTTTGGAATGA
CGAAAAGACTGATGTCCATATAGAGCTAGTGATAGATTAAATGTACGCCT
ATAGAAAGGCGAACTTTACATATAACGGCTAGTATGCCTAGGTAGGTTCC
GGACGGAAGGTTTCCGCTCGAAATTTCATTTGTTCCCAAGCTTGGATGAC
GCGCACGCGATGTTCGTTTAACGTAAAGAATACTATAATAATATTTTCAA
CTCAAAAATAGCAGTAGATATTGACTGTTACAGATATCGATACTTCAAAC
TGCAAGTGGAGATGCACTCATAACAACTTTTCCAAATCGCGAAGTGTTTC
AAAATATGCAGTGTCTACCAAGCCTGAGAGTAGCTGTGTGTCATCTAACG
CTGCATTTCACAATTCTACATATTTTAGTTGATTCAAGAAGTTGTGCTTC
ACGTAAGAAAAAGATATGGTGGGTG
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protein sequence of rna4693

>rna4693-protein ID=rna4693-protein|Name=rna4693|organism=Nannochloropsis gaditana|type=polypeptide|length=104bp
RKIPGFLRKQAQAFLRHQWEGGGRERRGEEAEGRTVSGGGGLGPTSVGKG
DFGGKGRGWEGLGEGGGIMYMTVLIGPCGMNGNGKEGGWRRRGKRLYRQR
RKTV
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mRNA from alignment at CM002464.1:86758..87570+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4693 ID=rna4693|Name=rna4693|organism=Nannochloropsis gaditana|type=mRNA|length=813bp|location=Sequence derived from alignment at CM002464.1:86758..87570+ (Nannochloropsis gaditana)
AGGAAAATTCCCGGCTTCCTCCGAAAACAAGCACAGGCCTTCCTACGGCA
CCaatgggaagggggagggagggaaagaagaggggaggaagcagagggtc
GTACAGTcagtggaggcgggggactTGGCCCTACAAGTGTAGGGAAAGGC
GATttcggagggaaggggagggggtgggagggcttgggggaggggggggg
gattaTGTATATGACCGTACTCATCGGACCATGTGGGATGAATGGaaacg
ggaaggaaggagggtggaggaggagagggaagcggcTGTATAGACAACGA
AGGAAGACGGTGTGAAGGCGACGGCTGGGGGCTGGGGGTCGAACGGGAGA
GGGGataagagggagggatccaTTTGATCGAAAGGAGGTGTATCTCATAT
GAGGAGGTCCGAGACCCGCTAGTTTGGATTCGTCGCCAGGATGCAGCCAC
CTTGGTGTGCATGCGGGCTTCTGTCGGACGCGTGCATCTCCGTCGTCTTG
CTGGCCGTCTGTGACCGCTTAGGCCAGGCTCTATCTCGAGGGATGAAgaa
tctttccttttcttaACATACGACCCAAAGCGAACGACCTGGGGCACGAG
AAAATTCAGCGGCGGTGCCCCGTTGAGGAGGGTGCCACAGCAATCGTCCT
CCTGGCGTGCGGCAGCCGCGTGGCATGGGGTGTACGGGATCGAAACGCCG
ATACACAGGCTGGCATGTTCCTTTGGGCGGGCGTCCTTTTGTCGATAGGC
GTCCGGAGCCCCTTAGCGTGGGGAAGCAATAGAATTTAAAGATAAAGAAA
AGACCGCACGTGC
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Coding sequence (CDS) from alignment at CM002464.1:86758..87570+

>rna4693 ID=rna4693|Name=rna4693|organism=Nannochloropsis gaditana|type=CDS|length=315bp|location=Sequence derived from alignment at CM002464.1:86758..87570+ (Nannochloropsis gaditana)
AGGAAAATTCCCGGCTTCCTCCGAAAACAAGCACAGGCCTTCCTACGGCA
CCaatgggaagggggagggagggaaagaagaggggaggaagcagagggtc
GTACAGTcagtggaggcgggggactTGGCCCTACAAGTGTAGGGAAAGGC
GATttcggagggaaggggagggggtgggagggcttgggggaggggggggg
gattaTGTATATGACCGTACTCATCGGACCATGTGGGATGAATGGaaacg
ggaaggaaggagggtggaggaggagagggaagcggcTGTATAGACAACGA
AGGAAGACGGTGTGA
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Synonyms
Publications