rna4686, rna4686 (mRNA) Nannochloropsis gaditana

Overview
Namerna4686
Unique Namerna4686
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length493
Alignment locationCM002464.1:60847..61724 +

Link to JBrowse

Properties
Property NameValue
Productmolybdenum cofactor biosynthesis protein
Orig transcript idgnl|cribi|Naga_101167g3.3645.mrna
Orig protein idgnl|cribi|Naga_101167g3.3645
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:60847..61724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101167g3gene4524Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4686rna4686-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25998.1cds4674Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4686 ID=rna4686|Name=rna4686|organism=Nannochloropsis gaditana|type=mRNA|length=493bp
GCCACCCTCCCTGCAGGCGAGCAAGTGCCGGCGCTCCTCTACGGCCCCCT
CCCTCCCCCTTCCCCTTCCTCGCTCTCCCACTTCTCCTGTGCCGCCGGCG
TGGATCATGAAGAGGCAGAGGGCGAGAGGGAGGGCGGGAAGGAGGGCGGG
GGGGAGGGCGACTTCGTCTACGAAGGCTGTCCATGCTGTGCGCCTGCCTC
CTTGGCCCCTCCCTCCTCCGCTTCTTCCCTCATCGCCGTCCCGAACGCCC
GGCTCCCTGGTGACGACGGGGCATTGCGCGGTGAAGAGGAGGGGAAGGAG
GGAGGGAGGGAAAGAGGGCGGCAAGAGGGAAAGGAGGGAAGGCTCGAAAG
AGGGGCGACACTGCCATCAGGTCTTCTGCCGGCGCCCTCCCCTATCGAGA
TCACGGTGGCCCTCCTTACAGTCTCCGATCGCGCGCACTCTGGGGTCTAT
GAGGATAAGAGTGGACCCGCCATGGCCCATGTGTTGACGAGTG
back to top

protein sequence of rna4686

>rna4686-protein ID=rna4686-protein|Name=rna4686|organism=Nannochloropsis gaditana|type=polypeptide|length=103bp
MPAVDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPF
AVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATCD
HKA
back to top

mRNA from alignment at CM002464.1:60847..61724+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4686 ID=rna4686|Name=rna4686|organism=Nannochloropsis gaditana|type=mRNA|length=878bp|location=Sequence derived from alignment at CM002464.1:60847..61724+ (Nannochloropsis gaditana)
ATGCCAGCAGTCATCGTTCGCACAATCCCACCCGCCGTGGTCtcaatcct
tccctcctctctctttctctttagGTGGATGCCATCTTCACGAGCGGGGG
AACCAGCTTCGCCCCTAGAGACCTGACGCCAGAGGCTGTTCGTCCTCTGA
TCGACAAGGAAGCTCCTGGGATGGTGTGGAGGATCATGGaggtagggcgg
gagggagtgggggaagaagggacggCTCACGCGAGCGAGTGGGGAAGAGC
CAGCAACGAATGCAatcgagaagggaggtggcaAAAGACGACGAGGGGAA
TGCTCTGAGTCACACGTCTAGATGGCGTGGGCAGTTTATATCTGTGTATA
CACATGCTCATGTCCACGTGTGAGAGAACGCGTTGCCGGATCCGTGGGAC
CGGCTGGTGCTTCGTATCCGAAGGGTCAGAGACCTGTCTCTGAACCTGAA
TCACGCGCCTCCCCTACCCTAGGTGGGGACGAAGCACACGCCCTTCGCGG
TGCTCTCTCGCCCCGTGGCCGGGGTGCGCGGTGGGACCTTCATTGTCACC
TTGCCGGGGAGTCCGAAGGTGCGTCttgaagcgggagggaaggaaggaag
gagggagggagggagggaggaagagaaggacgggggaaCTCCATGGAGGG
AAATGCATGCACCCGGGGAGAAAAGATGAGAACGCTTCCAGATGACGGGA
TGTGTCGTAAATCCCCTTGGCTGATGCCTCTTACCGCCCTTCTGTCTCAC
AATCCATTGTTGGCCGTCGCGTACCTTCGACTCCACAGGCAGTAAAGGAG
AACCTCGACacgctcctgcccctccttcccaaggTCTTCGGTCTCCTGAA
GACGGCTACGTGTGATCACAAGGCAtag
back to top

Coding sequence (CDS) from alignment at CM002464.1:60847..61724+

>rna4686 ID=rna4686|Name=rna4686|organism=Nannochloropsis gaditana|type=CDS|length=1248bp|location=Sequence derived from alignment at CM002464.1:60847..61724+ (Nannochloropsis gaditana)
ATGCCAGCAGTGGATGCCATCTTCACGAGCGGGGGAACCAGCTTCGCCCC
TAGAGACCTGACGCCAGAGGCTGTTCGTCCTCTGATCGACAAGGAAGCTC
CTGGGATGGTGTGGAGGATCATGGagGTGGGGACGAAGCACACGCCCTTC
GCGGTGCTCTCTCGCCCCGTGGCCGGGGTGCGCGGTGGGACCTTCATTGT
CACCTTGCCGGGGAGTCCGAAGGCAGTAAAGGAGAACCTCGACacgctcc
tgcccctccttcccaaggTCTTCGGTCTCCTGAAGACGGCTACGTGTGAT
CACAAGGCAtagATGCCAGCAGTGGATGCCATCTTCACGAGCGGGGGAAC
CAGCTTCGCCCCTAGAGACCTGACGCCAGAGGCTGTTCGTCCTCTGATCG
ACAAGGAAGCTCCTGGGATGGTGTGGAGGATCATGGagGTGGGGACGAAG
CACACGCCCTTCGCGGTGCTCTCTCGCCCCGTGGCCGGGGTGCGCGGTGG
GACCTTCATTGTCACCTTGCCGGGGAGTCCGAAGGCAGTAAAGGAGAACC
TCGACacgctcctgcccctccttcccaaggTCTTCGGTCTCCTGAAGACG
GCTACGTGTGATCACAAGGCAtagATGCCAGCAGTGGATGCCATCTTCAC
GAGCGGGGGAACCAGCTTCGCCCCTAGAGACCTGACGCCAGAGGCTGTTC
GTCCTCTGATCGACAAGGAAGCTCCTGGGATGGTGTGGAGGATCATGGag
GTGGGGACGAAGCACACGCCCTTCGCGGTGCTCTCTCGCCCCGTGGCCGG
GGTGCGCGGTGGGACCTTCATTGTCACCTTGCCGGGGAGTCCGAAGGCAG
TAAAGGAGAACCTCGACacgctcctgcccctccttcccaaggTCTTCGGT
CTCCTGAAGACGGCTACGTGTGATCACAAGGCAtagATGCCAGCAGTGGA
TGCCATCTTCACGAGCGGGGGAACCAGCTTCGCCCCTAGAGACCTGACGC
CAGAGGCTGTTCGTCCTCTGATCGACAAGGAAGCTCCTGGGATGGTGTGG
AGGATCATGGagGTGGGGACGAAGCACACGCCCTTCGCGGTGCTCTCTCG
CCCCGTGGCCGGGGTGCGCGGTGGGACCTTCATTGTCACCTTGCCGGGGA
GTCCGAAGGCAGTAAAGGAGAACCTCGACacgctcctgcccctccttccc
aaggTCTTCGGTCTCCTGAAGACGGCTACGTGTGATCACAAGGCAtag
back to top
Synonyms
Publications