EWM25998.1, cds4674 (CDS) Nannochloropsis gaditana

Overview
NameEWM25998.1
Unique Namecds4674
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:60847..60855 +
Alignment locationCM002464.1:60921..61037 +
Alignment locationCM002464.1:61319..61414 +
Alignment locationCM002464.1:61635..61724 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25998.1
Productmolybdenum cofactor biosynthesis protein
Orig transcript idgnl|cribi|Naga_101167g3.3645.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:60847..60855 +
CM002464.1supercontigCM002464.1:60921..61037 +
CM002464.1supercontigCM002464.1:61319..61414 +
CM002464.1supercontigCM002464.1:61635..61724 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0019538protein metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR001453MoaB/Mog_dom
Homology
BLAST of EWM25998.1 vs. NCBI_GenBank
Match: gi|585107907|gb|EWM25998.1| (molybdenum cofactor biosynthesis protein [Nannochloropsis gaditana])

HSP 1 Score: 206.453 bits (524), Expect = 1.828e-67
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
Query:    1 MPAVDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATCDHKA 103
            MPAVDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATCDHKA
Sbjct:    1 MPAVDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATCDHKA 103          
BLAST of EWM25998.1 vs. NCBI_GenBank
Match: gi|935659156|ref|WP_054492777.1| (molybdenum cofactor biosynthesis protein [Ardenticatena maritima] >gi|913354594|dbj|GAP62892.1| hypothetical protein ARMA_1315 [Ardenticatena maritima] >gi|934116572|gb|KPL89206.1| cytoplasmic protein [Ardenticatena maritima])

HSP 1 Score: 115.546 bits (288), Expect = 1.434e-30
Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = 0
Query:    4 VDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTA 97
            +D I T+GGT FAPRD TPEA RPL+D+EAPG+V  ++    + TP A+LSRP AG+RG T I+ LPGSPKAV+ENL T+LP LP    LL+ A
Sbjct:   69 LDLILTTGGTGFAPRDRTPEATRPLLDREAPGLVVAMLVASLQVTPHAMLSRPAAGMRGQTLIINLPGSPKAVRENLQTILPALPHGLELLREA 162          
BLAST of EWM25998.1 vs. NCBI_GenBank
Match: gi|1084555183|gb|OGO13061.1| (molybdenum cofactor biosynthesis protein [Chloroflexi bacterium RBG_13_68_17])

HSP 1 Score: 114.39 bits (285), Expect = 3.156e-30
Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 0
Query:    4 VDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLL 94
            VD I T+GGT FAPRD TPEA R +I++EAPG+   +   G++HTP A+LSR VAG+RG T IV LPGSPK  ++ LDTLLP+LP    LL
Sbjct:   62 VDLILTTGGTGFAPRDCTPEATRAVIEREAPGLAEAMRLAGSRHTPHAMLSRAVAGIRGRTLIVNLPGSPKGARQGLDTLLPVLPHAIALL 152          
BLAST of EWM25998.1 vs. NCBI_GenBank
Match: gi|299469862|emb|CBN76716.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 122.094 bits (305), Expect = 4.214e-30
Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 0
Query:    3 AVDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATC 99
            ++D + TSGGT F  RDLTPEA+RPL+ +EAPG+V  I + G K TP AVLSRPVAG R  T +VTLPGS KAVKENL +++PLLP++  LLK   C
Sbjct:  592 SIDLVLTSGGTGFGRRDLTPEAIRPLLHREAPGVVHAIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSMVPLLPRIVNLLKGNPC 688          
BLAST of EWM25998.1 vs. NCBI_GenBank
Match: gi|470527185|ref|XP_004356987.1| (Gephyrin, putative [Acanthamoeba castellanii str. Neff] >gi|440804088|gb|ELR24968.1| Gephyrin, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 112.849 bits (281), Expect = 1.692e-29
Identity = 53/89 (59.55%), Postives = 67/89 (75.28%), Query Frame = 0
Query:    7 IFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLK 95
            I T+GGT FAPRD+TPEA + ++D+EAPGMV  ++    + TP A+LSRP AG+R  T IV LPGS KAVKEN+D LLP+LP   GLL+
Sbjct:   76 ILTTGGTGFAPRDITPEATKAILDREAPGMVVAMVSASLQVTPHAMLSRPAAGMRKQTLIVNLPGSSKAVKENIDVLLPVLPHAIGLLR 164          
BLAST of EWM25998.1 vs. NCBI_GenBank
Match: gi|1173948845|gb|OQR96929.1| (gephyrin-like protein [Achlya hypogyna])

HSP 1 Score: 119.013 bits (297), Expect = 4.157e-29
Identity = 54/99 (54.55%), Postives = 73/99 (73.74%), Query Frame = 0
Query:    4 VDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATCDHK 102
            V+ +FTSGGT F+PRD TPEA++PL+++EAPG+V +IM    + TP A+LSRPVAG+RG T +VTLPG P AV EN++ + P+LP    LL   + DH 
Sbjct:  538 VNLVFTSGGTGFSPRDQTPEAIKPLLEREAPGLVHQIMTASLQVTPMAILSRPVAGIRGQTLVVTLPGKPNAVIENIEAISPVLPHALHLLADVSHDHH 636          
BLAST of EWM25998.1 vs. NCBI_GenBank
Match: gi|813119017|ref|XP_012196133.1| (hypothetical protein SPRG_02192 [Saprolegnia parasitica CBS 223.65] >gi|641539576|gb|KDO33385.1| hypothetical protein SPRG_02192 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 116.701 bits (291), Expect = 2.852e-28
Identity = 53/99 (53.54%), Postives = 73/99 (73.74%), Query Frame = 0
Query:    4 VDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATCDHK 102
            V+ +FTSGGT F+PRD TPEA++PL+++EAPG+V++IM+     TP A+LSRP+AG+RG T IVTLPG P AV EN++ +  +LP    LL   + DH 
Sbjct:  511 VNLVFTSGGTGFSPRDRTPEAIQPLLEREAPGLVFKIMQASLLVTPMAILSRPIAGLRGQTLIVTLPGKPNAVAENIEAIATVLPHALHLLADLSHDHH 609          
BLAST of EWM25998.1 vs. NCBI_GenBank
Match: gi|1176776315|gb|OQY94191.1| (hypothetical protein B6D41_07180 [Chloroflexi bacterium UTCFX4])

HSP 1 Score: 109.768 bits (273), Expect = 3.112e-28
Identity = 51/92 (55.43%), Postives = 67/92 (72.83%), Query Frame = 0
Query:    4 VDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLK 95
            +D I T+GGT FAPRD+TPEA R  +++EAPG+V+ ++    + TP A+LSR VAG+RG T IV LPGSPKA +ENL  +LP LP    LL+
Sbjct:   63 MDLILTTGGTGFAPRDVTPEATRATLEREAPGIVYAMLAASLQKTPHAMLSRAVAGIRGQTLIVNLPGSPKAARENLLAILPALPHALELLR 154          
BLAST of EWM25998.1 vs. NCBI_GenBank
Match: gi|919592934|ref|WP_052890687.1| (molybdenum cofactor biosynthesis protein [Thermogemmatispora carboxidivorans])

HSP 1 Score: 108.997 bits (271), Expect = 3.236e-28
Identity = 51/98 (52.04%), Postives = 68/98 (69.39%), Query Frame = 0
Query:    4 VDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATCDH 101
            ++ I T+GGT  APRD+TPEA + +I++EAPG+   +     +HTPF +LSR +AG RG T IV LPGSPKAVKE L+T+LP+LP    LL     +H
Sbjct:   64 LNLILTTGGTGLAPRDVTPEATKAVIEREAPGLAEAMRAASLQHTPFGMLSRGIAGTRGQTLIVNLPGSPKAVKECLETILPVLPHAINLLTGGPSEH 161          
BLAST of EWM25998.1 vs. NCBI_GenBank
Match: gi|1176769219|gb|OQY87124.1| (hypothetical protein B6D41_12370 [Chloroflexi bacterium UTCFX4])

HSP 1 Score: 109.383 bits (272), Expect = 5.072e-28
Identity = 50/92 (54.35%), Postives = 67/92 (72.83%), Query Frame = 0
Query:    4 VDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLK 95
            +D I T+GGT FAPRD+TPEA R  +++EAPG+++ ++    + TP A+LSR VAG+RG T IV LPGSPKA +ENL  +LP LP    LL+
Sbjct:   63 MDLILTTGGTGFAPRDVTPEATRATLEREAPGIIYAMLAASLQKTPHAMLSRAVAGIRGQTLIVNLPGSPKAARENLLAILPALPHALELLR 154          
The following BLAST results are available for this feature:
BLAST of EWM25998.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107907|gb|EWM25998.1|1.828e-67100.00molybdenum cofactor biosynthesis protein [Nannochl... [more]
gi|935659156|ref|WP_054492777.1|1.434e-3059.57molybdenum cofactor biosynthesis protein [Ardentic... [more]
gi|1084555183|gb|OGO13061.1|3.156e-3059.34molybdenum cofactor biosynthesis protein [Chlorofl... [more]
gi|299469862|emb|CBN76716.1|4.214e-3060.82conserved unknown protein [Ectocarpus siliculosus][more]
gi|470527185|ref|XP_004356987.1|1.692e-2959.55Gephyrin, putative [Acanthamoeba castellanii str. ... [more]
gi|1173948845|gb|OQR96929.1|4.157e-2954.55gephyrin-like protein [Achlya hypogyna][more]
gi|813119017|ref|XP_012196133.1|2.852e-2853.54hypothetical protein SPRG_02192 [Saprolegnia paras... [more]
gi|1176776315|gb|OQY94191.1|3.112e-2855.43hypothetical protein B6D41_07180 [Chloroflexi bact... [more]
gi|919592934|ref|WP_052890687.1|3.236e-2852.04molybdenum cofactor biosynthesis protein [Thermoge... [more]
gi|1176769219|gb|OQY87124.1|5.072e-2854.35hypothetical protein B6D41_12370 [Chloroflexi bact... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4686rna4686Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications