EWM25998.1, cds4674 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25998.1 vs. NCBI_GenBank
Match: gi|585107907|gb|EWM25998.1| (molybdenum cofactor biosynthesis protein [Nannochloropsis gaditana]) HSP 1 Score: 206.453 bits (524), Expect = 1.828e-67 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
Query: 1 MPAVDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATCDHKA 103
MPAVDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATCDHKA
Sbjct: 1 MPAVDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATCDHKA 103
BLAST of EWM25998.1 vs. NCBI_GenBank
Match: gi|935659156|ref|WP_054492777.1| (molybdenum cofactor biosynthesis protein [Ardenticatena maritima] >gi|913354594|dbj|GAP62892.1| hypothetical protein ARMA_1315 [Ardenticatena maritima] >gi|934116572|gb|KPL89206.1| cytoplasmic protein [Ardenticatena maritima]) HSP 1 Score: 115.546 bits (288), Expect = 1.434e-30 Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = 0
Query: 4 VDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTA 97
+D I T+GGT FAPRD TPEA RPL+D+EAPG+V ++ + TP A+LSRP AG+RG T I+ LPGSPKAV+ENL T+LP LP LL+ A
Sbjct: 69 LDLILTTGGTGFAPRDRTPEATRPLLDREAPGLVVAMLVASLQVTPHAMLSRPAAGMRGQTLIINLPGSPKAVRENLQTILPALPHGLELLREA 162
BLAST of EWM25998.1 vs. NCBI_GenBank
Match: gi|1084555183|gb|OGO13061.1| (molybdenum cofactor biosynthesis protein [Chloroflexi bacterium RBG_13_68_17]) HSP 1 Score: 114.39 bits (285), Expect = 3.156e-30 Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 0
Query: 4 VDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLL 94
VD I T+GGT FAPRD TPEA R +I++EAPG+ + G++HTP A+LSR VAG+RG T IV LPGSPK ++ LDTLLP+LP LL
Sbjct: 62 VDLILTTGGTGFAPRDCTPEATRAVIEREAPGLAEAMRLAGSRHTPHAMLSRAVAGIRGRTLIVNLPGSPKGARQGLDTLLPVLPHAIALL 152
BLAST of EWM25998.1 vs. NCBI_GenBank
Match: gi|299469862|emb|CBN76716.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 122.094 bits (305), Expect = 4.214e-30 Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 0
Query: 3 AVDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATC 99
++D + TSGGT F RDLTPEA+RPL+ +EAPG+V I + G K TP AVLSRPVAG R T +VTLPGS KAVKENL +++PLLP++ LLK C
Sbjct: 592 SIDLVLTSGGTGFGRRDLTPEAIRPLLHREAPGVVHAIYQGGLKFTPLAVLSRPVAGTRNNTLVVTLPGSVKAVKENLGSMVPLLPRIVNLLKGNPC 688
BLAST of EWM25998.1 vs. NCBI_GenBank
Match: gi|470527185|ref|XP_004356987.1| (Gephyrin, putative [Acanthamoeba castellanii str. Neff] >gi|440804088|gb|ELR24968.1| Gephyrin, putative [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 112.849 bits (281), Expect = 1.692e-29 Identity = 53/89 (59.55%), Postives = 67/89 (75.28%), Query Frame = 0
Query: 7 IFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLK 95
I T+GGT FAPRD+TPEA + ++D+EAPGMV ++ + TP A+LSRP AG+R T IV LPGS KAVKEN+D LLP+LP GLL+
Sbjct: 76 ILTTGGTGFAPRDITPEATKAILDREAPGMVVAMVSASLQVTPHAMLSRPAAGMRKQTLIVNLPGSSKAVKENIDVLLPVLPHAIGLLR 164
BLAST of EWM25998.1 vs. NCBI_GenBank
Match: gi|1173948845|gb|OQR96929.1| (gephyrin-like protein [Achlya hypogyna]) HSP 1 Score: 119.013 bits (297), Expect = 4.157e-29 Identity = 54/99 (54.55%), Postives = 73/99 (73.74%), Query Frame = 0
Query: 4 VDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATCDHK 102
V+ +FTSGGT F+PRD TPEA++PL+++EAPG+V +IM + TP A+LSRPVAG+RG T +VTLPG P AV EN++ + P+LP LL + DH
Sbjct: 538 VNLVFTSGGTGFSPRDQTPEAIKPLLEREAPGLVHQIMTASLQVTPMAILSRPVAGIRGQTLVVTLPGKPNAVIENIEAISPVLPHALHLLADVSHDHH 636
BLAST of EWM25998.1 vs. NCBI_GenBank
Match: gi|813119017|ref|XP_012196133.1| (hypothetical protein SPRG_02192 [Saprolegnia parasitica CBS 223.65] >gi|641539576|gb|KDO33385.1| hypothetical protein SPRG_02192 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 116.701 bits (291), Expect = 2.852e-28 Identity = 53/99 (53.54%), Postives = 73/99 (73.74%), Query Frame = 0
Query: 4 VDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATCDHK 102
V+ +FTSGGT F+PRD TPEA++PL+++EAPG+V++IM+ TP A+LSRP+AG+RG T IVTLPG P AV EN++ + +LP LL + DH
Sbjct: 511 VNLVFTSGGTGFSPRDRTPEAIQPLLEREAPGLVFKIMQASLLVTPMAILSRPIAGLRGQTLIVTLPGKPNAVAENIEAIATVLPHALHLLADLSHDHH 609
BLAST of EWM25998.1 vs. NCBI_GenBank
Match: gi|1176776315|gb|OQY94191.1| (hypothetical protein B6D41_07180 [Chloroflexi bacterium UTCFX4]) HSP 1 Score: 109.768 bits (273), Expect = 3.112e-28 Identity = 51/92 (55.43%), Postives = 67/92 (72.83%), Query Frame = 0
Query: 4 VDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLK 95
+D I T+GGT FAPRD+TPEA R +++EAPG+V+ ++ + TP A+LSR VAG+RG T IV LPGSPKA +ENL +LP LP LL+
Sbjct: 63 MDLILTTGGTGFAPRDVTPEATRATLEREAPGIVYAMLAASLQKTPHAMLSRAVAGIRGQTLIVNLPGSPKAARENLLAILPALPHALELLR 154
BLAST of EWM25998.1 vs. NCBI_GenBank
Match: gi|919592934|ref|WP_052890687.1| (molybdenum cofactor biosynthesis protein [Thermogemmatispora carboxidivorans]) HSP 1 Score: 108.997 bits (271), Expect = 3.236e-28 Identity = 51/98 (52.04%), Postives = 68/98 (69.39%), Query Frame = 0
Query: 4 VDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLKTATCDH 101
++ I T+GGT APRD+TPEA + +I++EAPG+ + +HTPF +LSR +AG RG T IV LPGSPKAVKE L+T+LP+LP LL +H
Sbjct: 64 LNLILTTGGTGLAPRDVTPEATKAVIEREAPGLAEAMRAASLQHTPFGMLSRGIAGTRGQTLIVNLPGSPKAVKECLETILPVLPHAINLLTGGPSEH 161
BLAST of EWM25998.1 vs. NCBI_GenBank
Match: gi|1176769219|gb|OQY87124.1| (hypothetical protein B6D41_12370 [Chloroflexi bacterium UTCFX4]) HSP 1 Score: 109.383 bits (272), Expect = 5.072e-28 Identity = 50/92 (54.35%), Postives = 67/92 (72.83%), Query Frame = 0
Query: 4 VDAIFTSGGTSFAPRDLTPEAVRPLIDKEAPGMVWRIMEVGTKHTPFAVLSRPVAGVRGGTFIVTLPGSPKAVKENLDTLLPLLPKVFGLLK 95
+D I T+GGT FAPRD+TPEA R +++EAPG+++ ++ + TP A+LSR VAG+RG T IV LPGSPKA +ENL +LP LP LL+
Sbjct: 63 MDLILTTGGTGFAPRDVTPEATRATLEREAPGIIYAMLAASLQKTPHAMLSRAVAGIRGQTLIVNLPGSPKAARENLLAILPALPHALELLR 154 The following BLAST results are available for this feature:
BLAST of EWM25998.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|