rna4684, rna4684 (mRNA) Nannochloropsis gaditana

Overview
Namerna4684
Unique Namerna4684
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length687
Alignment locationCM002464.1:57541..58998 +

Link to JBrowse

Properties
Property NameValue
Productmolybdopterin biosynthesis protein cnx1
Orig transcript idgnl|cribi|Naga_101094g2.10503.mrna
Orig protein idgnl|cribi|Naga_101094g2.10503
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:57541..58998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101094g2gene4522Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4684rna4684-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26002.1cds4672Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4684 ID=rna4684|Name=rna4684|organism=Nannochloropsis gaditana|type=mRNA|length=687bp
ATGTCGGAGCCACCATCTGCAGACACGAGTGCTGCGAGTCAGGAGGCTGG
TGCTGCTACTGCCACCAGTAATGGTACGCCGGCTCCCAACCCTGCGCCTG
CCAGTGCTCCCGCCCCCCCCGGGCATTACCAGAGCGTCGGTCCGGGATGG
GGATTCATCGTGCCGGAAGGGGGAGGAGGCGAGGCTAATGCGAGCTCTGC
CACGCCTGGCAATGACACTGACGCCTCCAAGGGATGGGGAGAACACGGGC
CATCCCAAGCACCGCAGCAGGCGACCGTTTCGGCAGCGGGGGCGGGAGGG
AAGGCAGGGGGGAGCACGTACAGTGGGGAGGGGACCACGGATCGGACAAA
TTTGATCGTCAATTACCTACCGAATGAGATCGATGACATGGGGTTGCGGG
AGCTGTTCCAGGACTTTGGTCAGGTGGAGTCGGCGCGGGTCATTAGGGAG
AAAGGGTCCGGTCGCTCTCTTGGCTACGGCTTCGTGAAGTACAAGGACCC
GCAGTCGGCGGATTCGGCGATTCTTACCCGGAACGGACACCAGGTCTACG
GGAAACGCATCAAGGTGTCGGTAGCGCGCCCGGCCTCTGAGGAACACAAA
CACACCAAGCTCTATGTTGCCAACCTCCCACATGTACGTCCCTCCCTCCC
TCCCTCCCTCCCTACTTCCCTCCCAGCTTCCCCCTGA
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protein sequence of rna4684

>rna4684-protein ID=rna4684-protein|Name=rna4684|organism=Nannochloropsis gaditana|type=polypeptide|length=163bp
MASTKTTSKSPAHAEAASRLKERRSPWPMVSVDDALTMVLQQTPTSAPMQ
VSLQEALGCVLADDITAPEPLPPFPAAIMDGYAVCSCDGPGVFPVMGRLT
AGVDPDAHGLILAPGYTCYITTGTKLPQGADAVVKIEDTAPPEGGTREGG
REKRKRRRLPSAF
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mRNA from alignment at CM002464.1:57541..58998+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4684 ID=rna4684|Name=rna4684|organism=Nannochloropsis gaditana|type=mRNA|length=1458bp|location=Sequence derived from alignment at CM002464.1:57541..58998+ (Nannochloropsis gaditana)
CGCTCAAACCCGCGTCGAATCATTTTACAGGCCGGAGAGTTCACAGATCG
ATAGCTTACTGAGGTGCATACGATATGGCATCCACGAAGACGACTTCGAA
AAGTCCGGCGCACGCGGAAGCTGCCTCTCGACTGAAAGAGAGACGCAGTC
CTTGGCCCATGGTTAGCGGTGAGTGTCAACAGCGTCCTGAAAAGGATCGA
GAGCATGACAGCGTAAGCCTGGTTACGAATTGTTATGCATGAATGGGATA
TCAGGGAGTGGTTTCCACCTTCGAGCGTGGAACCGAAGAGGGGGTGAGAA
ATATTTGCAACCTAGTCGGAAGATACTTTTCCCAAAATGAGGTCTTGGTT
AAGAAAGCTGTAGTAAGGGCAATAGGCAGGATCCGCCCTGATAGTTACGC
CGACAGTTGAAGTCCTTCAATCGCACAATttattctttctccctttcatt
CGCACAGTGGATGACGCGCTGACAATGGTGCTGCAACAGACTCCCACTTC
AGCCCCCATGCAAGTGTCGTTGCAGGAAGCTTTAGGCTGTGTACTGGCCG
ATGATATCACGGTACTCGAATACACGTCTGTGCTTCGATCCTATTTGCCT
GTACACCCGCTCAttaccctctcttcctcctccaacctcctggaCCTTGC
TCGTGGGCACAGGCTCCcgagcccctgcccccttttcccgccgCCATTAT
GGATGGCTATGCGGTTTGTTCCTGCGACGGCCCCGGTGTCTTTCCAGTCA
TGGGTCGTTTGACTGCAGGCGTCGATCCGGATGCTCATGGTACCcatgtc
cctccctccctccctccctccctccctccctccctccctcccacgactcc
tcccttctcatccaCGTGGGACGCCGGCCTGATCCTCCACCGTGCATATC
gatccgccctccctctcgctctctcAACAGGCCTCATTCTAGCCCCTGGC
TACACCTGCTACATCACTACTGGGACCAAGCTCCCTCAGGGGGCGGACGC
CGTGGTGAAGATCGAAGACACGGCGCCCCCCgaaggggggacgagggagg
gagggagggagaagaggaagaggaggagactgcCGGTAAGCCCTGCTCCT
GCGAAGCGGCTCGTAGGCGCTCTACGACATCTTacttttcctgcctcctg
tcATACCTtaccttcttcccttcctccctccttccctccctccctttctc
cctcgctccttctttcccttctccagtCCGCATTCTAGTCTCGTCCGCAC
CTGGTCAATGGGTCCGTGCACGTGGCAGCGATGTGAAGCAGGTGCGtatg
cctctctccctcctttcccccctccttctctcccccccctctttccctcc
ctccctccgtccctccttccctcccactcacCACCACTTGCACTTCATTC
TTGCAGGGAGAGATCATACTTCGGCGTCTCACGCTCCTCGGTCCCGCGGA
GATCGGTA
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Coding sequence (CDS) from alignment at CM002464.1:57541..58998+

>rna4684 ID=rna4684|Name=rna4684|organism=Nannochloropsis gaditana|type=CDS|length=2460bp|location=Sequence derived from alignment at CM002464.1:57541..58998+ (Nannochloropsis gaditana)
ATGGCATCCACGAAGACGACTTCGAAAAGTCCGGCGCACGCGGAAGCTGC
CTCTCGACTGAAAGAGAGACGCAGTCCTTGGCCCATGGTTAGCGTGGATG
ACGCGCTGACAATGGTGCTGCAACAGACTCCCACTTCAGCCCCCATGCAA
GTGTCGTTGCAGGAAGCTTTAGGCTGTGTACTGGCCGATGATATCACGGC
TCCcgagcccctgcccccttttcccgccgCCATTATGGATGGCTATGCGG
TTTGTTCCTGCGACGGCCCCGGTGTCTTTCCAGTCATGGGTCGTTTGACT
GCAGGCGTCGATCCGGATGCTCATGGCCTCATTCTAGCCCCTGGCTACAC
CTGCTACATCACTACTGGGACCAAGCTCCCTCAGGGGGCGGACGCCGTGG
TGAAGATCGAAGACACGGCGCCCCCCgaaggggggacgagggagggaggg
agggagaagaggaagaggaggagactgcCGtCCGCATTCTAGATGGCATC
CACGAAGACGACTTCGAAAAGTCCGGCGCACGCGGAAGCTGCCTCTCGAC
TGAAAGAGAGACGCAGTCCTTGGCCCATGGTTAGCGTGGATGACGCGCTG
ACAATGGTGCTGCAACAGACTCCCACTTCAGCCCCCATGCAAGTGTCGTT
GCAGGAAGCTTTAGGCTGTGTACTGGCCGATGATATCACGGCTCCcgagc
ccctgcccccttttcccgccgCCATTATGGATGGCTATGCGGTTTGTTCC
TGCGACGGCCCCGGTGTCTTTCCAGTCATGGGTCGTTTGACTGCAGGCGT
CGATCCGGATGCTCATGGCCTCATTCTAGCCCCTGGCTACACCTGCTACA
TCACTACTGGGACCAAGCTCCCTCAGGGGGCGGACGCCGTGGTGAAGATC
GAAGACACGGCGCCCCCCgaaggggggacgagggagggagggagggagaa
gaggaagaggaggagactgcCGtCCGCATTCTAGATGGCATCCACGAAGA
CGACTTCGAAAAGTCCGGCGCACGCGGAAGCTGCCTCTCGACTGAAAGAG
AGACGCAGTCCTTGGCCCATGGTTAGCGTGGATGACGCGCTGACAATGGT
GCTGCAACAGACTCCCACTTCAGCCCCCATGCAAGTGTCGTTGCAGGAAG
CTTTAGGCTGTGTACTGGCCGATGATATCACGGCTCCcgagcccctgccc
ccttttcccgccgCCATTATGGATGGCTATGCGGTTTGTTCCTGCGACGG
CCCCGGTGTCTTTCCAGTCATGGGTCGTTTGACTGCAGGCGTCGATCCGG
ATGCTCATGGCCTCATTCTAGCCCCTGGCTACACCTGCTACATCACTACT
GGGACCAAGCTCCCTCAGGGGGCGGACGCCGTGGTGAAGATCGAAGACAC
GGCGCCCCCCgaaggggggacgagggagggagggagggagaagaggaaga
ggaggagactgcCGtCCGCATTCTAGATGGCATCCACGAAGACGACTTCG
AAAAGTCCGGCGCACGCGGAAGCTGCCTCTCGACTGAAAGAGAGACGCAG
TCCTTGGCCCATGGTTAGCGTGGATGACGCGCTGACAATGGTGCTGCAAC
AGACTCCCACTTCAGCCCCCATGCAAGTGTCGTTGCAGGAAGCTTTAGGC
TGTGTACTGGCCGATGATATCACGGCTCCcgagcccctgcccccttttcc
cgccgCCATTATGGATGGCTATGCGGTTTGTTCCTGCGACGGCCCCGGTG
TCTTTCCAGTCATGGGTCGTTTGACTGCAGGCGTCGATCCGGATGCTCAT
GGCCTCATTCTAGCCCCTGGCTACACCTGCTACATCACTACTGGGACCAA
GCTCCCTCAGGGGGCGGACGCCGTGGTGAAGATCGAAGACACGGCGCCCC
CCgaaggggggacgagggagggagggagggagaagaggaagaggaggaga
ctgcCGtCCGCATTCTAGATGGCATCCACGAAGACGACTTCGAAAAGTCC
GGCGCACGCGGAAGCTGCCTCTCGACTGAAAGAGAGACGCAGTCCTTGGC
CCATGGTTAGCGTGGATGACGCGCTGACAATGGTGCTGCAACAGACTCCC
ACTTCAGCCCCCATGCAAGTGTCGTTGCAGGAAGCTTTAGGCTGTGTACT
GGCCGATGATATCACGGCTCCcgagcccctgcccccttttcccgccgCCA
TTATGGATGGCTATGCGGTTTGTTCCTGCGACGGCCCCGGTGTCTTTCCA
GTCATGGGTCGTTTGACTGCAGGCGTCGATCCGGATGCTCATGGCCTCAT
TCTAGCCCCTGGCTACACCTGCTACATCACTACTGGGACCAAGCTCCCTC
AGGGGGCGGACGCCGTGGTGAAGATCGAAGACACGGCGCCCCCCgaaggg
gggacgagggagggagggagggagaagaggaagaggaggagactgcCGtC
CGCATTCTAG
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Synonyms
Publications