rna4680, rna4680 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4680
Unique Name	rna4680
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1842
Alignment location	CM002464.1:49877..51774 +

Link to JBrowse

Properties


Property Name	Value
Product	set domain protein
Orig transcript id	gnl\|cribi\|Naga_100499g4.1688.mrna
Orig protein id	gnl\|cribi\|Naga_100499g4.1688
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:49877..51774 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100499g4	gene4518	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4680	rna4680-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26005.1	cds4668	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:49877..51774+
coding sequence from alignment at CM002464.1:49877..51774+

mRNA sequence

>rna4680 ID=rna4680|Name=rna4680|organism=Nannochloropsis gaditana|type=mRNA|length=1842bp
GACGTCTGTTTAAGAGCTAAAATTGCACGGACATGGTGTACTGCCTCTAA
TACTGGCTTCGTAACATTGTGTGCAGCAGTTTATCTACGCAGGAGGGTAG
AGGTATATCGTCCTGCTGGTTTATTTCTTTCGATCGGCTCCTGCGCATAC
GTAGCGCTAACATCCCACCTCCCCACTCTCCTCCTCGTGCCCTACTTGGC
GTGAACTTCAGTCGCACCAACGGGCATGAGAGAGCGACCAGCAGATCATG
TAAGCAGGAAGCGGCAGCGAAATGCAACAACACTTGATTCTTTCGCGGTT
TCTGATGCCTTGACGACCAAGTCTGCGCCGTATTCCAAGTCTCCTCCAGC
ACCGCCATATCAGCCCGCGAATAAAACCACGCTCTTGCCCATTGGGCTTC
GATTGCGACGGGAGAAACAACGTGCACGAAAGGTTAAATGTAATCAAGTG
GAATCCGAAAAGGGCGATGAGGGAGAAAAGGTAGAAAATGGAGGGAGCAA
GAATGGACAAAGAGTGGACTTGTCGGAAGAAAGTAGCCTGGATATGCTCC
TAGATTCATCGGATGAGGAGATTGCCGACGATGAGGATGGTAGGTTTCCT
TCCTGCAGTATGGTTCCCAAACCTTTTTCTTGCTCGTAGGTGTATAATAT
GCAGTGCTTGATACACAGCCTCACTATTACTCTCATTTTCTTGCTTACGT
GCGGCCGCAGGGGGTTCTGCTCGACAGAAAATCCGACTGAATGACTTGGA
TGCCCGGCTTGCCGCGCTGGAAAAAGAACTATCCTCTTCTTCCTCTTCAT
CCTCCTCCTCCTCCTCGTCGTCGTCTTCCTCCTCGCCTTTTCCCTCAAAT
GAGGAGGGAATACCTGATTTTGAGAAAGCGGAGGAATCTGAAGGCCTGAT
CATCGAGAAAGGAGGGGCTGTCTTGAAAAGTCGCCTCGCCAAGGAGGCAG
CCATCCCTCCTCTCCCTCCTCACCTCCTCCCACTCCCTGAATGTAAGGGA
AAAGGGGGCGGTCGCGTCCCTTTGCCGGATTCGGACGGACGTTCCGGGGG
AAGGAAACGCCTGACCCGCAAGGAGAAGATAGCCAGCGACAGGATGCAAC
AAGGAAACGGTGGTGCGCAAAGCCCCGGGGATCCAGCAGGTCCCCTCCCT
CCTTTACAGCCGTCCTCTTCTGCTTCATCGGCCGGTGCAGGGCTAGCGCA
AACCGTGGCTGAGCTTCTTTCCAATTATCAGCCGGCGTCAAGTGAGCGTC
GGCCGTTCTACTGTCGGATTTGCCGATTTCAGGGTCAATCCCTCGAGGAT
CTAGCGCATCACAAGAAAGGGGAATTACACCGCTTGGCCCAAGAGAGCGA
ACGAAAACTCACCTTTTGCCGACTGTGTCGCAAGCAATTTACCAGCATGG
AGCAAATGAAAAGTCATTTGAAAGGGAAGCCCCATCAAGAGCTTCTCATG
AAAAGGAGGGGGGGAGGAAGAGGGGGGGAAGGAGACAAGTGGAACAAAGG
TGCTAAGCTGTGATCAAGAATCATTTTCCTAGCACTTTTCATCGTTGAAT
TGGAAAAAAGTTTTTACAAATATATTCTATCGTTTTCGACTTCCGCAACG
CATCGCACATAATGATCTTATTGCCCCCCTCCCCCCCTTCACCATTGACC
AGCAATAAAAATAAAGACGACGCTGTTAAGGAGTGGAAGAGTCTTGCCAA
GCGTACATCTGACACTTCAAAGCAGAATTCACAGTGATGTTACAAATATA
GCCCTGGAGACGATACTATCACTGTTGAACAAAACTGGTAAAAACACATA
CACGGACAGCTAAGAGACTGCGAAAGAGCTCAATCACTTGCG

protein sequence of rna4680

>rna4680-protein ID=rna4680-protein|Name=rna4680|organism=Nannochloropsis gaditana|type=polypeptide|length=299bp
MRNLCPRERGRRRTRGIVLVVVSAIVASTSSVLQAQALRHDHITSSATQN
KKFLSCSFVSSLMLPFEPGRALGKSCTFLVKAHPGGGQRTSKEKGRRRGR
NGDLSTTSSLSFPSPTRAAREVFPPYGEEHIQVEERLKKKPAHWPSEVLF
SQKLKWAASSAGQDVKEVFRRRLLPGIEVRRITEPSHVLHGQYGVYATRA
FAPFDVVGEYVGRVVPPAVCGDYVASIDQDDGRLPHGSSPWGVDSALYGN
EVRMINHFHQIGPVPNVKFVTAYIAELPHILVVVLRPIAEGAEILIDYG

mRNA from alignment at CM002464.1:49877..51774+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4680 ID=rna4680|Name=rna4680|organism=Nannochloropsis gaditana|type=mRNA|length=1898bp|location=Sequence derived from alignment at CM002464.1:49877..51774+ (Nannochloropsis gaditana)
agcaccaccatAATGTCCGAATTAGGCACGTGTACTGAATTTACCCTTTT
TTCGCAGAGTGCCAAGATAGGGGGCAATTTTAGATGAGGAATCTCTGCCC
TCGGGaacgaggacggagaagaacGCGCGGAATTGTACTGGTGGTGGTAT
CCGCCATCGTCGCCTCAACGTCAAGCGTGCTACAAGCCCAAGCACTACGA
CATGATCACATCACCAGCTCGGCCACCCAGAATAAAAAATTTCTCAGCTG
TAGCTTTGTTAGCTCTCTCATGCTGCCTTTTGAGCCCGGACGTGCCCTCG
GAAAGAGTTGTAAGTGCGCGCTCCTCAACGATCAAGTTGGTTAGTATGTC
ACAACTCCTCGACTCATTTGTTTACAACTCCCCATCTGTCAACAGGCACT
TTCTTGGTAAAGGCCCACCCCGGGGGTGGTCAAAGAACTAGCAAAGAGAA
AGGTCGAAGACGAGGTCGTAATGGGGACCTGTCCACAACGTCGTCGCTGT
CGTTTCCGTCTCCCACTAGGGCTGCTCGTGAGGTTTTCCCACCCTACGGT
GAAGAGCACATTCAAGTGGAGGAGCGTTTAAAGAAGAAACCAGCACACTG
GCCAAGTGAGGTATGCTTTACGCCAGCACAAAGTCCATTCCCTGCATCCC
CCATGGCCCTTTCGTGACTAATTAGACTTCTTTTAGCCTTGCACAAAGCT
CCCGGGCGCCCTGATTGGTGGACGCTGCATGTCTCCTGCCCCACCACAtg
gccctttttcccttacATCACAGGTACTCTTCTCACAAAAGTTGAAGTGG
GCCGCTTCCTCAGCCGGCCAGGACGTGAAGGAAGTCTTCCGTCGCCGTCT
ACTTCCGGGTATCGAGGTCCGGCGCATCACCGAGCCGTCCCACGTCCTGC
ACGGGCAGTATGGTACGTGACACAGGgtccgagggaggaaagccacCATT
CGACCGCTGCTCTCGATGCCATCCATGTCCTTCCCTGACACCGGCCCGCT
TTTCCCGCAGGAGTGTACGCCACGCGGGCCTTCGCGCCTTTCGACGTGGT
TGGCGAGTACGTCGGCCGCGTCGTCCCCCCGGCGGTGTGCGGGGACTACG
TGGCAAGCATCGACCAGGACGACGGGCGCTTGCCCCACGGGTCTTCTCCC
TGGGGTGTCGATTCGGCCTTGTACGGGAGTGAGTGGCGCCATGGCAGGGT
GCAAGGGATGCCCTCCACGTTTCCTTGTCAGGGACTCGCTCCCGCACCGG
CCCATATCCCTCTTGACCACCCTTGATCTTGCCTTCTCCCACATTTTCCA
CAGACGAAGTCCGGATGATCAACCATTTTCACCAGATCGGTCCCGTGCCC
AACGTCAAGTTTGTCACCGCCTACATCGCAGAGCTCCCGCACATCCTGGT
TGTGGTGCTGCGACCCATCGCCGAGGGGGCAGAGATCCTCATCGACTACG
GGTGAGTCCCTGAGACTGGCCTAACCTTTTGGGGACGATTGCATCCGTGC
CAATGGGATgcgtttctcttccctttcctacTTCCAGGGCGGACTACTGG
TGTGGGCGGgaccatccccccccccccgagccccGTGGGATCGACGACGG
TCTCGACGCGGACGTCCTGGTGGATGGCTGATATCGCGTTGAAGGGGCGC
TGGTGAATGGGTGGGAGTGATTCGATGGATGGTCGATCGGTGAATGTGTG
GCCGGTCTTTTTCGGCTTTCGGAGTTCGCGGACGCGCATCCTCTAGGGGA
CTGTTTGCGTTCTTAAGGGACGAGCACATGAGGGTGCTCCGTCTCTGCTG
GGCTCTCTCACGAGTTCGTCTAGGGATGAACGTTGGTCGAATATATACCC
GTTCTGGGACGGCAAAGAACACAACCACAAGGCCTCGCTCGACCTTTT

Coding sequence (CDS) from alignment at CM002464.1:49877..51774+

>rna4680 ID=rna4680|Name=rna4680|organism=Nannochloropsis gaditana|type=CDS|length=4500bp|location=Sequence derived from alignment at CM002464.1:49877..51774+ (Nannochloropsis gaditana)
ATGAGGAATCTCTGCCCTCGGGaacgaggacggagaagaacGCGCGGAAT
TGTACTGGTGGTGGTATCCGCCATCGTCGCCTCAACGTCAAGCGTGCTAC
AAGCCCAAGCACTACGACATGATCACATCACCAGCTCGGCCACCCAGAAT
AAAAAATTTCTCAGCTGTAGCTTTGTTAGCTCTCTCATGCTGCCTTTTGA
GCCCGGACGTGCCCTCGGAAAGAGTTGCACTTTCTTGGTAAAGGCCCACC
CCGGGGGTGGTCAAAGAACTAGCAAAGAGAAAGGTCGAAGACGAGGTCGT
AATGGGGACCTGTCCACAACGTCGTCGCTGTCGTTTCCGTCTCCCACTAG
GGCTGCTCGTGAGGTTTTCCCACCCTACGGTGAAGAGCACATTCAAGTGG
AGGAGCGTTTAAAGAAGAAACCAGCACACTGGCCAAGTGAGGTACTCTTC
TCACAAAAGTTGAAGTGGGCCGCTTCCTCAGCCGGCCAGGACGTGAAGGA
AGTCTTCCGTCGCCGTCTACTTCCGGGTATCGAGGTCCGGCGCATCACCG
AGCCGTCCCACGTCCTGCACGGGCAGTATGGAGTGTACGCCACGCGGGCC
TTCGCGCCTTTCGACGTGGTTGGCGAGTACGTCGGCCGCGTCGTCCCCCC
GGCGGTGTGCGGGGACTACGTGGCAAGCATCGACCAGGACGACGGGCGCT
TGCCCCACGGGTCTTCTCCCTGGGGTGTCGATTCGGCCTTGTACGGGAAC
GAAGTCCGGATGATCAACCATTTTCACCAGATCGGTCCCGTGCCCAACGT
CAAGTTTGTCACCGCCTACATCGCAGAGCTCCCGCACATCCTGGTTGTGG
TGCTGCGACCCATCGCCGAGGGGGCAGAGATCCTCATCGACTACGGGTGA
ATGAGGAATCTCTGCCCTCGGGaacgaggacggagaagaacGCGCGGAAT
TGTACTGGTGGTGGTATCCGCCATCGTCGCCTCAACGTCAAGCGTGCTAC
AAGCCCAAGCACTACGACATGATCACATCACCAGCTCGGCCACCCAGAAT
AAAAAATTTCTCAGCTGTAGCTTTGTTAGCTCTCTCATGCTGCCTTTTGA
GCCCGGACGTGCCCTCGGAAAGAGTTGCACTTTCTTGGTAAAGGCCCACC
CCGGGGGTGGTCAAAGAACTAGCAAAGAGAAAGGTCGAAGACGAGGTCGT
AATGGGGACCTGTCCACAACGTCGTCGCTGTCGTTTCCGTCTCCCACTAG
GGCTGCTCGTGAGGTTTTCCCACCCTACGGTGAAGAGCACATTCAAGTGG
AGGAGCGTTTAAAGAAGAAACCAGCACACTGGCCAAGTGAGGTACTCTTC
TCACAAAAGTTGAAGTGGGCCGCTTCCTCAGCCGGCCAGGACGTGAAGGA
AGTCTTCCGTCGCCGTCTACTTCCGGGTATCGAGGTCCGGCGCATCACCG
AGCCGTCCCACGTCCTGCACGGGCAGTATGGAGTGTACGCCACGCGGGCC
TTCGCGCCTTTCGACGTGGTTGGCGAGTACGTCGGCCGCGTCGTCCCCCC
GGCGGTGTGCGGGGACTACGTGGCAAGCATCGACCAGGACGACGGGCGCT
TGCCCCACGGGTCTTCTCCCTGGGGTGTCGATTCGGCCTTGTACGGGAAC
GAAGTCCGGATGATCAACCATTTTCACCAGATCGGTCCCGTGCCCAACGT
CAAGTTTGTCACCGCCTACATCGCAGAGCTCCCGCACATCCTGGTTGTGG
TGCTGCGACCCATCGCCGAGGGGGCAGAGATCCTCATCGACTACGGGTGA
ATGAGGAATCTCTGCCCTCGGGaacgaggacggagaagaacGCGCGGAAT
TGTACTGGTGGTGGTATCCGCCATCGTCGCCTCAACGTCAAGCGTGCTAC
AAGCCCAAGCACTACGACATGATCACATCACCAGCTCGGCCACCCAGAAT
AAAAAATTTCTCAGCTGTAGCTTTGTTAGCTCTCTCATGCTGCCTTTTGA
GCCCGGACGTGCCCTCGGAAAGAGTTGCACTTTCTTGGTAAAGGCCCACC
CCGGGGGTGGTCAAAGAACTAGCAAAGAGAAAGGTCGAAGACGAGGTCGT
AATGGGGACCTGTCCACAACGTCGTCGCTGTCGTTTCCGTCTCCCACTAG
GGCTGCTCGTGAGGTTTTCCCACCCTACGGTGAAGAGCACATTCAAGTGG
AGGAGCGTTTAAAGAAGAAACCAGCACACTGGCCAAGTGAGGTACTCTTC
TCACAAAAGTTGAAGTGGGCCGCTTCCTCAGCCGGCCAGGACGTGAAGGA
AGTCTTCCGTCGCCGTCTACTTCCGGGTATCGAGGTCCGGCGCATCACCG
AGCCGTCCCACGTCCTGCACGGGCAGTATGGAGTGTACGCCACGCGGGCC
TTCGCGCCTTTCGACGTGGTTGGCGAGTACGTCGGCCGCGTCGTCCCCCC
GGCGGTGTGCGGGGACTACGTGGCAAGCATCGACCAGGACGACGGGCGCT
TGCCCCACGGGTCTTCTCCCTGGGGTGTCGATTCGGCCTTGTACGGGAAC
GAAGTCCGGATGATCAACCATTTTCACCAGATCGGTCCCGTGCCCAACGT
CAAGTTTGTCACCGCCTACATCGCAGAGCTCCCGCACATCCTGGTTGTGG
TGCTGCGACCCATCGCCGAGGGGGCAGAGATCCTCATCGACTACGGGTGA
ATGAGGAATCTCTGCCCTCGGGaacgaggacggagaagaacGCGCGGAAT
TGTACTGGTGGTGGTATCCGCCATCGTCGCCTCAACGTCAAGCGTGCTAC
AAGCCCAAGCACTACGACATGATCACATCACCAGCTCGGCCACCCAGAAT
AAAAAATTTCTCAGCTGTAGCTTTGTTAGCTCTCTCATGCTGCCTTTTGA
GCCCGGACGTGCCCTCGGAAAGAGTTGCACTTTCTTGGTAAAGGCCCACC
CCGGGGGTGGTCAAAGAACTAGCAAAGAGAAAGGTCGAAGACGAGGTCGT
AATGGGGACCTGTCCACAACGTCGTCGCTGTCGTTTCCGTCTCCCACTAG
GGCTGCTCGTGAGGTTTTCCCACCCTACGGTGAAGAGCACATTCAAGTGG
AGGAGCGTTTAAAGAAGAAACCAGCACACTGGCCAAGTGAGGTACTCTTC
TCACAAAAGTTGAAGTGGGCCGCTTCCTCAGCCGGCCAGGACGTGAAGGA
AGTCTTCCGTCGCCGTCTACTTCCGGGTATCGAGGTCCGGCGCATCACCG
AGCCGTCCCACGTCCTGCACGGGCAGTATGGAGTGTACGCCACGCGGGCC
TTCGCGCCTTTCGACGTGGTTGGCGAGTACGTCGGCCGCGTCGTCCCCCC
GGCGGTGTGCGGGGACTACGTGGCAAGCATCGACCAGGACGACGGGCGCT
TGCCCCACGGGTCTTCTCCCTGGGGTGTCGATTCGGCCTTGTACGGGAAC
GAAGTCCGGATGATCAACCATTTTCACCAGATCGGTCCCGTGCCCAACGT
CAAGTTTGTCACCGCCTACATCGCAGAGCTCCCGCACATCCTGGTTGTGG
TGCTGCGACCCATCGCCGAGGGGGCAGAGATCCTCATCGACTACGGGTGA
ATGAGGAATCTCTGCCCTCGGGaacgaggacggagaagaacGCGCGGAAT
TGTACTGGTGGTGGTATCCGCCATCGTCGCCTCAACGTCAAGCGTGCTAC
AAGCCCAAGCACTACGACATGATCACATCACCAGCTCGGCCACCCAGAAT
AAAAAATTTCTCAGCTGTAGCTTTGTTAGCTCTCTCATGCTGCCTTTTGA
GCCCGGACGTGCCCTCGGAAAGAGTTGCACTTTCTTGGTAAAGGCCCACC
CCGGGGGTGGTCAAAGAACTAGCAAAGAGAAAGGTCGAAGACGAGGTCGT
AATGGGGACCTGTCCACAACGTCGTCGCTGTCGTTTCCGTCTCCCACTAG
GGCTGCTCGTGAGGTTTTCCCACCCTACGGTGAAGAGCACATTCAAGTGG
AGGAGCGTTTAAAGAAGAAACCAGCACACTGGCCAAGTGAGGTACTCTTC
TCACAAAAGTTGAAGTGGGCCGCTTCCTCAGCCGGCCAGGACGTGAAGGA
AGTCTTCCGTCGCCGTCTACTTCCGGGTATCGAGGTCCGGCGCATCACCG
AGCCGTCCCACGTCCTGCACGGGCAGTATGGAGTGTACGCCACGCGGGCC
TTCGCGCCTTTCGACGTGGTTGGCGAGTACGTCGGCCGCGTCGTCCCCCC
GGCGGTGTGCGGGGACTACGTGGCAAGCATCGACCAGGACGACGGGCGCT
TGCCCCACGGGTCTTCTCCCTGGGGTGTCGATTCGGCCTTGTACGGGAAC
GAAGTCCGGATGATCAACCATTTTCACCAGATCGGTCCCGTGCCCAACGT
CAAGTTTGTCACCGCCTACATCGCAGAGCTCCCGCACATCCTGGTTGTGG
TGCTGCGACCCATCGCCGAGGGGGCAGAGATCCTCATCGACTACGGGTGA

Synonyms

Publications