EWM26005.1, cds4668 (CDS) Nannochloropsis gaditana

Overview
NameEWM26005.1
Unique Namecds4668
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:49960..50185 +
Alignment locationCM002464.1:50272..50486 +
Alignment locationCM002464.1:50650..50788 +
Alignment locationCM002464.1:50887..51054 +
Alignment locationCM002464.1:51180..51331 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26005.1
Productset domain protein
Orig transcript idgnl|cribi|Naga_100499g4.1688.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:49960..50185 +
CM002464.1supercontigCM002464.1:50272..50486 +
CM002464.1supercontigCM002464.1:50650..50788 +
CM002464.1supercontigCM002464.1:50887..51054 +
CM002464.1supercontigCM002464.1:51180..51331 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
Homology
BLAST of EWM26005.1 vs. NCBI_GenBank
Match: gi|585107918|gb|EWM26005.1| (set domain protein [Nannochloropsis gaditana])

HSP 1 Score: 612.068 bits (1577), Expect = 0.000e+0
Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 0
Query:    1 MRNLCPRERGRRRTRGIVLVVVSAIVASTSSVLQAQALRHDHITSSATQNKKFLSCSFVSSLMLPFEPGRALGKSCTFLVKAHPGGGQRTSKEKGRRRGRNGDLSTTSSLSFPSPTRAAREVFPPYGEEHIQVEERLKKKPAHWPSEVLFSQKLKWAASSAGQDVKEVFRRRLLPGIEVRRITEPSHVLHGQYGVYATRAFAPFDVVGEYVGRVVPPAVCGDYVASIDQDDGRLPHGSSPWGVDSALYGNEVRMINHFHQIGPVPNVKFVTAYIAELPHILVVVLRPIAEGAEILIDYG 299
            MRNLCPRERGRRRTRGIVLVVVSAIVASTSSVLQAQALRHDHITSSATQNKKFLSCSFVSSLMLPFEPGRALGKSCTFLVKAHPGGGQRTSKEKGRRRGRNGDLSTTSSLSFPSPTRAAREVFPPYGEEHIQVEERLKKKPAHWPSEVLFSQKLKWAASSAGQDVKEVFRRRLLPGIEVRRITEPSHVLHGQYGVYATRAFAPFDVVGEYVGRVVPPAVCGDYVASIDQDDGRLPHGSSPWGVDSALYGNEVRMINHFHQIGPVPNVKFVTAYIAELPHILVVVLRPIAEGAEILIDYG
Sbjct:    1 MRNLCPRERGRRRTRGIVLVVVSAIVASTSSVLQAQALRHDHITSSATQNKKFLSCSFVSSLMLPFEPGRALGKSCTFLVKAHPGGGQRTSKEKGRRRGRNGDLSTTSSLSFPSPTRAAREVFPPYGEEHIQVEERLKKKPAHWPSEVLFSQKLKWAASSAGQDVKEVFRRRLLPGIEVRRITEPSHVLHGQYGVYATRAFAPFDVVGEYVGRVVPPAVCGDYVASIDQDDGRLPHGSSPWGVDSALYGNEVRMINHFHQIGPVPNVKFVTAYIAELPHILVVVLRPIAEGAEILIDYG 299          
BLAST of EWM26005.1 vs. NCBI_GenBank
Match: gi|1072228881|gb|OEU13616.1| (SET domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 93.5893 bits (231), Expect = 3.216e-19
Identity = 51/143 (35.66%), Postives = 76/143 (53.15%), Query Frame = 0
Query:  156 WAASSAGQDVKEVFRRRLLPGIEVRRITEPSHVLHGQYGVYATRAFAPFDVVGEYVGRVVPPAVCGDYVASIDQDDGRLPHGSSPWGVDSALYGNEVRMINHFHQIGPVPNVKFVTAYIAELPHILVVVLRPIAEGAEILIDY 298
            W  SS G+ +K+   R  + G+E+R I E +H L GQ G++A + F  F+++GEY G V       +Y   ++  + +        GVD+   GNE+R  NHF  I   PN+    AY+ ELP ++VV  + IA G E L  Y
Sbjct:   64 WPRSSQGRKIKKRSARPFIHGVEIR-ILEDTHPLSGQCGLFAIQPFEQFEILGEYCGEVYEGDDGSEYATYLEDRNKKYA-----LGVDATREGNEMRFANHFTGIADEPNIIMKIAYVEELPRVMVVCKKDIAIGEEFLFKY 200          
BLAST of EWM26005.1 vs. NCBI_GenBank
Match: gi|551636771|ref|XP_005821208.1| (hypothetical protein GUITHDRAFT_166263 [Guillardia theta CCMP2712] >gi|428165228|gb|EKX34228.1| hypothetical protein GUITHDRAFT_166263 [Guillardia theta CCMP2712])

HSP 1 Score: 93.5893 bits (231), Expect = 7.795e-19
Identity = 53/158 (33.54%), Postives = 85/158 (53.80%), Query Frame = 0
Query:  144 WPSEVLFSQKLKWAASSAGQDVKEVFRRRLLPGIEVRRITEPSHVLHGQYGVYATRAFAPFDVVGEYVGRVVPPAVCGDYVASIDQDDGRLPHGSSPWGVDSALYGNEVRMINHFHQI--GPVPNVKFVTAYIAELPHILVVVLRPIAEGAEILIDYG 299
            WP+ + ++     A  S G   + + R   LPG+ +++I + +H  +GQ G++A+  F   DV+GEY G++VP    G+YV  +  + G       P GVD+ + GNE+RMIN +  +     PN KF    +      L+V +R +A G E L+DYG
Sbjct:   48 WPAGLQYTHTPDLAGLSPGD--RRLIRMDYLPGVTIKKIDDRAHPAYGQNGLFASMEFTVGDVLGEYTGKIVPGHCGGNYVTRL-WNSGHDSDYFRP-GVDAEVMGNELRMINDYRSVPGATGPNCKFSRTTLRGYRAALIVAIRNVAPGEEFLLDYG 201          
BLAST of EWM26005.1 vs. NCBI_GenBank
Match: gi|873240782|emb|CEL93070.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 86.6557 bits (213), Expect = 1.992e-17
Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 0
Query:  197 ATRAFAPFDVVGEYVGRVVPPAVCGDYVASIDQDDGRLPHGSSPWGVDSALYGNEVRMINHFHQIGPVPNVKFVTAYIAELPHILVVVLRPIAEGAEILIDYG 299
            A R + PF+V+GEY G +VPP+  G YV  + QD+      S    VD++  GNE+R +N +  I   PNV F + +I  LP  L+VV RP+A G E L DYG
Sbjct:   15 AARRWEPFEVLGEYTGYLVPPSRDGPYVCKLVQDEADWEAVS----VDASKAGNELRFVNDYRGISEQPNVSFSSCFIDGLPRTLLVVTRPVAFGEEFLADYG 113          
BLAST of EWM26005.1 vs. NCBI_GenBank
Match: gi|873233086|emb|CEM04161.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 86.2705 bits (212), Expect = 2.352e-17
Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 0
Query:  197 ATRAFAPFDVVGEYVGRVVPPAVCGDYVASIDQDDGRLPHGSSPWGVDSALYGNEVRMINHFHQIGPVPNVKFVTAYIAELPHILVVVLRPIAEGAEILIDYG 299
            A R + PF+V+GEY G +VPP+  G YV  + QD+      S    VD++  GNE+R +N +  I   PNV F + +I  LP  L+VV RP+A G E L DYG
Sbjct:   15 AARRWEPFEVLGEYTGYLVPPSRDGPYVCKLVQDEADWEAVS----VDASKAGNELRFVNDYRGIAEQPNVTFSSCFIDGLPRTLLVVTRPVAFGEEFLADYG 113          
BLAST of EWM26005.1 vs. NCBI_GenBank
Match: gi|551673010|ref|XP_005839261.1| (hypothetical protein GUITHDRAFT_102184 [Guillardia theta CCMP2712] >gi|428183423|gb|EKX52281.1| hypothetical protein GUITHDRAFT_102184 [Guillardia theta CCMP2712])

HSP 1 Score: 85.8853 bits (211), Expect = 2.093e-16
Identity = 57/177 (32.20%), Postives = 84/177 (47.46%), Query Frame = 0
Query:  144 WPSEVLFSQKLKWAASSAGQDVKEVFRRRLLPGIEVRRITEPSHVLHGQYGVYATRAFAPFDVVGEYVGRVVPPAVCGDYVA-SIDQDDGRLPHGSSPWG--VDSALYGNEVRMINHFHQIGPVPNVKF------------------VTAYIAELPHILVVVLRPIAEGAEILIDYG 299
            WP+ V + ++  W   S  +  +E F    L G++VR I    H   GQ G++A R + PF+V+GEY G V  P    D  A   D D     + S+ W   +D++  GNE R IN F  +   PN KF                  + +++   P ILVV+ R + E  E+L+DYG
Sbjct:   32 WPTSVKYLKENDWDEISGSE--REWFCVTRLQGVQVRFIHHDGHPCKGQRGLFAIRVWEPFEVLGEYCGVVKVP---NDQEARQCDSDYAVAVYKSATWTPFIDASRAGNETRFINDFRGVAGSPNCKFSQVPSLQSVCHLLYELAALQSHVGGRPAILVVITRQVKEEEELLVDYG 203          
BLAST of EWM26005.1 vs. NCBI_GenBank
Match: gi|514684386|ref|XP_004989773.1| (hypothetical protein PTSG_12820 [Salpingoeca rosetta] >gi|326432527|gb|EGD78097.1| hypothetical protein PTSG_12820 [Salpingoeca rosetta])

HSP 1 Score: 85.8853 bits (211), Expect = 5.162e-15
Identity = 54/168 (32.14%), Postives = 84/168 (50.00%), Query Frame = 0
Query:  139 KKPAHWPSEVLFSQKLKWAASSAGQDVKEVFRRRLLPGIEVRRITEPSHVLHGQYGVYATRAFAPFDVVGEYVGRVVPPAVCGDYVASIDQDDGRLP---HGSSPW-GVDSALYGNEVRMINHFHQIG--PVPNVKFVTAYI-AELPHILVVVLRPIAEGAEILIDYG 299
            K P +WP++V ++  L W   +    +  V ++R+ P IEVR I +  H   GQ GV+A +   P + +G Y G V  PA   +Y      +D +     H    W  +D+A +GNE+R IN F  I      NV F   Y    + ++ +  +R I+ G E+L+DYG
Sbjct: 1048 KIPRYWPADVHYTPVLLWGVPNVNDTLLSVTQQRVHPSIEVRPIRDRGHPCFGQLGVFAAKEIGPDEHIGFYTGMVREPAGASEY------NDSKYITELHMEGLWLDIDAAQFGNEMRFINDFRGIDEKKKANVAFKINYCGCGMKNMGITTMRSISVGEELLLDYG 1209          
BLAST of EWM26005.1 vs. NCBI_GenBank
Match: gi|1091996870|ref|XP_018735522.1| (hypothetical protein AWJ20_1323 [Sugiyamaella lignohabitans] >gi|1026311171|gb|ANB13045.1| hypothetical protein AWJ20_1323 [Sugiyamaella lignohabitans])

HSP 1 Score: 75.485 bits (184), Expect = 7.059e-13
Identity = 57/174 (32.76%), Postives = 86/174 (49.43%), Query Frame = 0
Query:  140 KPAHWPSEVLF------SQKLKWAASSA-GQDVK-EVFRRRLLPG--IEVRRITEPSHVLHGQYGVYATRAFAPFDVVGEYVGRV---VPPAVCGDYVASIDQDDGRLPHGSSPWGVDSALYGNEVRMINHFHQIGPVPNVKFVTAYIAELPHILVVVL-RPIAEGAEILIDYG 299
            KP +WP  ++F      S+KL     +A G DVK +   R   P   +++++I +P H  +GQ G++A R  AP   V +Y+G V          DY   +D+  G          +D+  +G E RMIN +  I   PNVKF   Y+     + V VL +PI+ G E+ I+YG
Sbjct:    5 KPKNWPEGLIFVTRNVYSKKLAADELAAIGHDVKKQATVRAQNPSNLVKIKKILDPKHPAYGQNGLFAARKLAPGSHVIDYLGYVHNSQDTDPTSDYDIQLDKQSGI--------AIDAQKWGTEARMINDYRGIQSKPNVKFDDHYVDGQLRVAVFVLNQPISAGDELCINYG 170          
BLAST of EWM26005.1 vs. NCBI_GenBank
Match: gi|1023280040|gb|KZT74883.1| (hypothetical protein DAEQUDRAFT_720067 [Daedalea quercina L-15889])

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-11
Identity = 54/164 (32.93%), Postives = 81/164 (49.39%), Query Frame = 0
Query:  139 KKPAHWPSEVLFSQKLKWAASSAGQDVKEVFRRRLLPGIEVRRITEPSHVLHGQYGVYATRAFAPFDVVGEYVGRVVPPAVCGDYVAS-IDQDDGRLPHGSSPWGVDSALYGNEVRMINHFHQIGPVPNVKFVTAYI--AELPHILVVVLRPIAEGAEILIDYG 299
            K P HWP+++L+  + ++ +S     V   +R +L+    +R ITE SH  HGQ+G++A +   P   + +Y+G V     C D + S  D    R P G S  G+D+   GNE R +N +  I   PN  F        EL   +     PI +G EIL+ YG
Sbjct:    2 KAPPHWPADILYITEQQYHSS-----VPAEYRLQLV----IRPITESSHPAHGQFGLFAVKRIPPRTHIVDYIGEV----HCDDRLGSDYDLSLYRTPAGFSV-GIDAQRMGNEARFVNDYRAIKSKPNAFFDERRTEGGELRMSVWSGSDPIKKGDEILVSYG 151          
BLAST of EWM26005.1 vs. NCBI_GenBank
Match: gi|1063240763|gb|ODQ63619.1| (hypothetical protein NADFUDRAFT_53282 [Nadsonia fulvescens var. elongata DSM 6958])

HSP 1 Score: 70.0922 bits (170), Expect = 6.554e-11
Identity = 50/172 (29.07%), Postives = 85/172 (49.42%), Query Frame = 0
Query:  141 PAHWPSEVLFSQKLKWAASSAGQDVKEVFRRRLL-------PG--IEVRRITEPSHVLHGQYGVYATRAFAPFDVVGEYVGR---VVPPAVCGDYVASIDQDDGRLPHGSSPWGVDSALYGNEVRMINHFHQIGPVPNVKFVTAYI-AELPHILVVVLRPIAEGAEILIDYG 299
            P +WPS V+++Q   ++ S +   ++ + R  L        P   ++++ IT+PSH   GQ+G++AT+   P   + +Y+G    V    V  DY  ++D D G          +D+A +G E RMIN +  +   PNV F    +  EL   + V  + I +G E+ + YG
Sbjct:    6 PTNWPSSVIYTQTNIYSKSFSPDQLQSLGRANLQKPLKPQPPAKLVKIKPITDPSHPACGQFGLFATQKLPPKSHIIDYLGYVHLVSESDVTSDYDITLDGDLGV--------AIDAAKWGCEARMINDYRGVKERPNVIFENRIVGGELRMAVWVGGKEIKKGEEVCVSYG 169          
The following BLAST results are available for this feature:
BLAST of EWM26005.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107918|gb|EWM26005.1|0.000e+0100.00set domain protein [Nannochloropsis gaditana][more]
gi|1072228881|gb|OEU13616.1|3.216e-1935.66SET domain-containing protein [Fragilariopsis cyli... [more]
gi|551636771|ref|XP_005821208.1|7.795e-1933.54hypothetical protein GUITHDRAFT_166263 [Guillardia... [more]
gi|873240782|emb|CEL93070.1|1.992e-1743.69unnamed protein product [Vitrella brassicaformis C... [more]
gi|873233086|emb|CEM04161.1|2.352e-1743.69unnamed protein product [Vitrella brassicaformis C... [more]
gi|551673010|ref|XP_005839261.1|2.093e-1632.20hypothetical protein GUITHDRAFT_102184 [Guillardia... [more]
gi|514684386|ref|XP_004989773.1|5.162e-1532.14hypothetical protein PTSG_12820 [Salpingoeca roset... [more]
gi|1091996870|ref|XP_018735522.1|7.059e-1332.76hypothetical protein AWJ20_1323 [Sugiyamaella lign... [more]
gi|1023280040|gb|KZT74883.1|1.033e-1132.93hypothetical protein DAEQUDRAFT_720067 [Daedalea q... [more]
gi|1063240763|gb|ODQ63619.1|6.554e-1129.07hypothetical protein NADFUDRAFT_53282 [Nadsonia fu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4680rna4680Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications