rna468, rna468 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna468
Unique Name	rna468
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	948
Alignment location	CM002455.1:1168767..1169378 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100003g7.1795.mrna
Orig protein id	gnl\|cribi\|Naga_100003g7.1795
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1168767..1169378 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g7	gene451	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30278.1	cds468	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna468	rna468-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1168767..1169378-
coding sequence from alignment at CM002455.1:1168767..1169378-

mRNA sequence

>rna468 ID=rna468|Name=rna468|organism=Nannochloropsis gaditana|type=mRNA|length=948bp
ATGAAGAGCCATCATTCCCTCCCGCTTCCTTATTATATCATGGCTGGCTA
TCTAGCTGATTATCAGAAGACTTGTGCAGAGCTCACGGACGCCATTTTCA
AATGGGCAGATCCCGCGGGCACAATGCTTAAATCACCGACCCGCACTTGG
CCCCTGGCGGGTTTGGATGTGGCGCTTGCCATTGCAGCTGCCTACCTCGT
TTTCGTTTTCGTGGGCTCGATTGTAATGAAGGACGCGCAGCCAGTAAAGC
TTTACGGCTTGCAATTTTTCTACAACATCTCACAAGTCGCCCTGTGCTCC
TACATGTGTATCGAAGCCGTGATTCAAGCGTATCGAAATAACTATACTTT
GCTGCCTTGTGAGCCCTTTAATACGACCAACCCCCCCCTTGGCCCCCTTC
TCTGGCTCTTCTACATCTCCAAGATCTTTGACTTCGCAGACACCGTTTTC
ATCATCCTCGGAAAGAAATGGAGTCAACTTTCTTTCCTTCATGTGTACCA
CCATGTGACCATCTTCTTGGTGTACTGGCTAAATTTGAATGCCGGCTACG
ATGGGGACATTTTCCTGACTGTGATCTTAAACGGCGCCATTCATACGGTT
ATGTACGCCTATTACTTCCTTTCTATGCACACGAAAGACATTTGGTGGAA
GAAATATCTCACTCTCTTCCAGATTATCCAATTTTTGACGATGAACGCGC
AAGCCATCTATATTCTGGGCGTTGGCTGTAAGAGTTTTCCCACCCAAATT
ACTAAGCTGTACCTGGGTTACATTCTCTCGCTTCTCGTCCTCTTCCTCAA
CTTCTACTTCAAGACTTATTCAAGCCCGAAGCCTAATGGGAAGAAACCTA
AAAAGGCAAATTACCTCATTGAAATTGACATATTGAGAAGTACACCGGTG
ATAACGACAATTCTTCAGAGGCATACACATGAAGGGGTTCACATATAA

protein sequence of rna468

>rna468-protein ID=rna468-protein|Name=rna468|organism=Nannochloropsis gaditana|type=polypeptide|length=203bp
MPPEPPSARARLPWWWSLADTQGENVLAFLGAASFLTYVLHMPTVVRAVE
EGKWGKVERFAGMVSGVLGVVSENDSLRMLADVAGMTEQLDGMWRDAQRV
QGVLRDTTPEDIVAVLPASHIAGLVRRKRKRASRALKGQMRDILIWMRSN
ELPARVVYPLLTPLCVYATDALMGFEEDEHAGDEEEEEEQEVAGHLGLYE
IGL

mRNA from alignment at CM002455.1:1168767..1169378-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna468 ID=rna468|Name=rna468|organism=Nannochloropsis gaditana|type=mRNA|length=612bp|location=Sequence derived from alignment at CM002455.1:1168767..1169378- (Nannochloropsis gaditana)
ATGCCGCCGGAGCCACCCAGTGCCCGTGCGCGCCTGCCCTGGTGGTGGAG
CCTGGCGGATACCCAGGGCGAGAACGTGTTGGCGTTCCTGGGGGCCGCCT
CGTTCCTGACGTACGTTTTGCACATGCCCACGGTGGTGCGTGCCGTCGAG
GAAGGGAAGTGGGGGAAAGTGGAGCGGTTTGCGGGCATGGTGTCGGGCGT
CCTGGGCGTGGTGTCGGAAAACGACTCCCTGCGCATGCTCGCTGACGTGG
CCGGCATGACCGAGCAACTGGACGGGATGTGGCGCGATGCTCAGAGGGTA
CAAGGGGTTCTGCGAGATACCACCCCGGAGGACATTGTGGCCGTTCTCCC
GGCGTCTCACATAGCGGGGCTGGTTCGGCGGAAGCGAAAGAGGGCCTCGC
GGGCGCTTAAAGGGCAAATGCGCGATATCTTGATTTGGATGCGGTCGAAT
GAGTTGCCAGCACGAGTGGTATATCCACTTTTGACTCCATTGTGTGTGTA
CGCAACTGACGCATTGATGGGCTTTGAAGAGGATGAACATGCCGGGGATG
AAGAGGAAGAGGAGGAGCAGGAGGTTGCTGGGCATTTGGGGTTGTATGAA
ATTGGCTTGTAG

Coding sequence (CDS) from alignment at CM002455.1:1168767..1169378-

>rna468 ID=rna468|Name=rna468|organism=Nannochloropsis gaditana|type=CDS|length=612bp|location=Sequence derived from alignment at CM002455.1:1168767..1169378- (Nannochloropsis gaditana)
ATGCCGCCGGAGCCACCCAGTGCCCGTGCGCGCCTGCCCTGGTGGTGGAG
CCTGGCGGATACCCAGGGCGAGAACGTGTTGGCGTTCCTGGGGGCCGCCT
CGTTCCTGACGTACGTTTTGCACATGCCCACGGTGGTGCGTGCCGTCGAG
GAAGGGAAGTGGGGGAAAGTGGAGCGGTTTGCGGGCATGGTGTCGGGCGT
CCTGGGCGTGGTGTCGGAAAACGACTCCCTGCGCATGCTCGCTGACGTGG
CCGGCATGACCGAGCAACTGGACGGGATGTGGCGCGATGCTCAGAGGGTA
CAAGGGGTTCTGCGAGATACCACCCCGGAGGACATTGTGGCCGTTCTCCC
GGCGTCTCACATAGCGGGGCTGGTTCGGCGGAAGCGAAAGAGGGCCTCGC
GGGCGCTTAAAGGGCAAATGCGCGATATCTTGATTTGGATGCGGTCGAAT
GAGTTGCCAGCACGAGTGGTATATCCACTTTTGACTCCATTGTGTGTGTA
CGCAACTGACGCATTGATGGGCTTTGAAGAGGATGAACATGCCGGGGATG
AAGAGGAAGAGGAGGAGCAGGAGGTTGCTGGGCATTTGGGGTTGTATGAA
ATTGGCTTGTAG

Synonyms

Publications