rna4678, rna4678 (mRNA) Nannochloropsis gaditana

Overview
Namerna4678
Unique Namerna4678
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2667
Alignment locationCM002464.1:45848..47494 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100499g6.1686.mrna
Orig protein idgnl|cribi|Naga_100499g6.1686
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:45848..47494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100499g6gene4516Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26003.1cds4666Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4678rna4678-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4678 ID=rna4678|Name=rna4678|organism=Nannochloropsis gaditana|type=mRNA|length=2667bp
ATGGAGAGAGGAAGGGAGGGAGGGGGTGAGGGAGAGAAGGTCTGGATGGT
CGATTTTCCCAAGGGGTGGGTCGTGTGGGAAGGCGGACAAGAGGGGGGGA
GGGCAGGCCCGTTGCTTTCCTATATGCGGAGATTGCTGACGTTTCCTTAC
AGGCTGCATTATCGGGCCCGGTCCCCCGCCCCTCTCCCCGCCCTCTTGGC
TCACGGTCGGGCTGTGGTCAAGGACGCGCGTCCTCGGGAGCTCGTCAGGA
GCTTGCAGGCTCTCGCATTGCTGGACCGGGGGAGGCGGGCGGAGGGGCAG
GACGCCTTTGTCAAGAGCTGCATGACCGTCGCTCTCTCCACACGGTTCTC
GAAGTTTCAGGCCGGAGACATCGCGTCCCTCTTGGAGAGTCTCCTTCGGC
TGGCCGCTTGGCAAGGATACGAGCCGGAGACGGTCGACACCTTTTTGAGA
GTGGCCCTGGCGCGATACATGCTGGTAATGGAGGCAAGCAGCACGCAGGA
GATCGTCCTCGTCCTCCATATCCTCTCGTGCACTCCACGGGCAGGGGCAG
GGGGACGGCGGCTGGAAGACTTGGCGCTTAGCCTCCTGCAGAGACTCTTA
GAGACCCCCAGCCTCAACGAGGCCCTCAAGCCGCAGACCGCAGCCACCCT
TGTGAGCGCAGCGGGCCGCTTGTTTTCCTCTCCCTCTTCTGCCGAGTCTT
CTCACCGGGTAAAGCACCTCTATCGGCCCCTGATGCTCCGTGCCTGCGAA
TTGTTGGGGGAAATGGATAACCAGGTGGGAGGGAGGGAGGGGGGAGGAAA
GGAGGGGGGAAGGGCCCGAGGAAGGGAAGGAGGAAGGGAAGGAGGCGAGA
CGCGAGATAGCCACAATACGCTTTCTGGCCAGCTTCGGCGTCTGTGTACA
TTGTTAGGAGGGAAAGTGAGTACGGGGGCGTTGAGACAAGGTAAAAATCA
TGCGAAGACATGCCGGTCGAGGACGGAAGGCAACAGGAAGGGTAACATGG
GATACCAGGCGCATGGGACAGGGGAGGGAGGAAAAGGTGTCGACAGTGTC
CGAGAAGACAAAGAAAGGTATCCGTCTCTTCCGTGTCCGTTCTCAAACAC
GATCCATCCCCCCCAGGCCCTGGCGCGGACGGTAGAGGGGCTCGGGCAGC
TCTCGCACGGCCGGGGGGGTACACGGGAGCCAATTGCCGGTCGCTTTCAG
ACGATCGCCTCCCCTTCTCTCTCCTCCTTCACCTCTGAGGAGCTTGCTGC
TTCCCTGCAGGGTTTGAGTCTGCTGGGCCGGTCCTTGTCCGCCGAATTTT
CTGCCAGGGCAGAAGCTGCAATCCTTTCTCACTTGGATGATTGCACCCTC
TTCCAGCTCGTCGTGGCGCTACACAGCATGGCCACGCTGGGACACCGTCC
TGGGGACCATTTCCTCGATGCCGCCCTAGCCGCGGTCCACTCCCGCCTGG
CACGTCCAGCTTCCATAAAGAAGAGGCCTACATCCACATCGCATCCTTCC
TCCCTCAAACCCTTCTTCCCCTCCCTCTCACCCGAAAGCGAACTCCCCAA
GGCCCTTCCCCTCCTCCTTGTCGCCCTGGGCGTCCTCCAGCACCAGCCTC
CCTCTTCGCTCTGGCTCTTGCTGACGGACGCTCTTGTTGCTGGCCCTGAC
CGTATCGTCCCCCCGAAGAGGGAGAAGAAGCTGTGCTCTCCTCCCATCCC
CACTCCCTCCCTCCGGCTTGTGGACCTTGCTCCCTGTCTCTGGGCCCTTG
CCACCCTGGACTTCCCCCTTTCCCTCCCTCCCTCCCTCCTTCCCTCCCTC
CTTGACCGCCTCGATGCCTGCCTCTTCACGACAGAAAACGTCGCGCTGGA
TACCGCAAGACAGCTCAAGCAATTCGCCCTGGCTTTTGACCTCTCCTCCC
CACTCTCCTCCTCCCTCCCGCTTTGGCCCGCTTTGCGCACTCTTATCGAG
AATCATGCATGGGCTCCGCACGCCCAGGAGGAGTATTCACGCATTGATGA
AGAGGGGGAGGACAGGGACAACGTCATCACCTGTCCCATGCAGCTGGAAG
TGGTGGAAATCTTGCGCGAACTTGGCTTCCCCTGCAAGAGCGAAGTCCAC
TGGGGACCTTTCAGCCTGGATATCCTCATTTACCCTCCTTCGCCTCCTCT
TGGCCCCGTTCCCGCTCCTGCTCCCTCCCGTTCCATGGCTCTCAGTCACC
AGACGGAAAGTCAGGGACAAAGCGATCCCTCCTCTTCCACCTCCCTCCCG
AGCCTGTCGAGTCCTGGGTATACTGGCCCTTCCTCCTCCCTTCCTTTCCT
TCCCCCCTCTCACCACCTCTCGCTGCCCCTCGTGCTCGAAGTGGACGGTC
GTTCCCACTTCCTCGACACGGACTCGGTGACGGCACCGCGGGGAGAGACC
GTCTTGAAGAGAAAGATCCTGGCCGGCATGGCGGGGAGGCTCTGGGCGGG
AGTGCTGGTCCTGACGGCTGAGGAGTGGACAGCCTGCGAGGAAGGGAACC
CCGCACTGGGCTATGCACCTCTAGACTACACACATAACCTACAGCGAAGA
GGAGAAGCTGAACGTGCGCGGAAGAAGCAAATGCTGAAGGAAAGAATCAA
GGAGGCTTTTTTGGGGCCTGCGTGCGTGCAGGGATGGACGAGCGGAGAGA
CCTGGAGCCATCCGTGA
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protein sequence of rna4678

>rna4678-protein ID=rna4678-protein|Name=rna4678|organism=Nannochloropsis gaditana|type=polypeptide|length=219bp
MPPLCRARLPFWEGRRPVGTNLGLGLTPPSLPPSLPPSLPSSLPPSLPPS
PLSISHNAPAFVQEREGCCFPTSHLLLFFLLSSFLFKEREDAFPYSLLLS
FLPSSFLVKEREDAFPHPSSCQGGRRGRGGREEEAQREEEGRGGGERGSH
ERVGGQFCGPEEAFQRPDKGWRGGRARAEGSGRRKGRRGRKRGAGGALEW
GPTQEAEQDRSAGEEGGRE
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mRNA from alignment at CM002464.1:45848..47494-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4678 ID=rna4678|Name=rna4678|organism=Nannochloropsis gaditana|type=mRNA|length=1647bp|location=Sequence derived from alignment at CM002464.1:45848..47494- (Nannochloropsis gaditana)
ATAGCACGTTCTCCACAGAATCAGAGGCCGTCGTCATTGGCAGGTTTGCG
CTACAGGAACAGCGGGCACGCGCTGTGTATTTCGGTGGGTAGGGTGGGTG
GGTGTGGGAGTATGTGGTCGGAGGGTGAAGAGGTTTCGAGATCTTCATGG
CCTGGGTTTCCATTACTGTGCGTGTCTCACTTCCCTTGATCGCTTTGTTT
TATCACATTGGTTACCTTCGCGTTCATGGATATGAATTGGGATCGTGTCT
CCCACTTGTGAGTTCTCTCTCTATGCGTGCTCCCTCCCCACTTGGCGTTG
GCTTTTCTCACCAACGGCACTTTTTCCTCAGTCCAATAAAGCGCATGTCT
TACGGTTGCTCTGATGCGAATTCTCTCTCCTGTTATTGGTGAGGAATTAA
ATTCCACGATTCCGATCATATGCTGAGGAACTTTTTAAAACACCAAACGG
TGGCTGAGCAATACATCAAGAAGTCCTTTATTGGCGTTGGGGGAATTCTC
TGACCTAGAAAATCCTAAATTGATAACAATCGTCCCAATTCGTCATAATT
CTAACGGCGATCCCCGCACATTGCTTTCGCCTCCACTCTTACCTCCGTAG
CATGCCGCGAAGTCGACGGGCAATAAAAAAGGGAATGAGAGAGCACAGCC
TCTCCCGCCGGAGCGGCTCCCGCCTCATCAGCGCCTGCATAGGTGAGCCG
TATCGATGTTTACGGGAAGAGTAGATGGGCGTCTTTGGATGGAGCTGGGA
GGGTCCTGGTGGGAAGCGAGGTGGACAGAAACCAATTGACGTTCGTGTGT
ATCCGCCCTGCACTATTGAGAGAAGTCGACGGTAGTGATGCTCCTTCTGC
GATTCTGAACACACGCCTTGTCCTCCTGCTCCCTCAAAATGAGGGCGTGA
GGGTGGTGACGTGATTTTACCATATCAATAAAGTTTACCTTCGCCGGTAG
CTCCTTCTGAACCGTCTCGACCCCCCGTCGCGTTCCCCTATGCCTCCTCT
TTGTCGTGCTCGGCTGCCATTCTGGGAAGGCCGGAGACCTGTTGGCACTA
ACTTGGGATTGGGACTTACACCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCTGTCCAT
CAGCCATAATGCTCCGGCTTTCGTGCAGGAGCGAGAGGGCTGCTGCTTTC
CTACCAGCCACCTCCTCCTTTTCTTCCTCCTCTCTTCCTTCTTGTTCAAG
GAGAGGGAGGACGCGTTTCCTTACTCCCTCCTCCTTTCCTTCCTCCCCTC
TTCCTTCTTGGTCAAGGAGAGGGAGGACGCGTTCCCTCACCCCTCTTCCT
GCCAGGGCGGTCGGAGGGGGAGGGGAGGGAGGGAAGAGGAAGCCCAAAGG
GAAGAAGAAGGGCGAGGAGGAGGAGAAAGAGGATCTCATGAAAGAGTGGG
GGGGCAATTTTGTGGGCCGGAAGAAGCTTTTCAGCGCCCCGACAAAGGGT
GGAGGGGAGGAAGGGCAAGGGCTGAAGGCAGCGGGCGGAGGAAGGGTAGG
AGGGGGAGAAAAAGGGGGGCCGGTGGCGCGCTCGAGTGGGGACCAACTCA
AGAAGCTGAGCAAGACCGGTCGGCAGGTGAGGAGGGAGGGAGGGAGG
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Coding sequence (CDS) from alignment at CM002464.1:45848..47494-

>rna4678 ID=rna4678|Name=rna4678|organism=Nannochloropsis gaditana|type=CDS|length=658bp|location=Sequence derived from alignment at CM002464.1:45848..47494- (Nannochloropsis gaditana)
ATGCCTCCTCTTTGTCGTGCTCGGCTGCCATTCTGGGAAGGCCGGAGACC
TGTTGGCACTAACTTGGGATTGGGACTTACACCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CCCCTGTCCATCAGCCATAATGCTCCGGCTTTCGTGCAGGAGCGAGAGGG
CTGCTGCTTTCCTACCAGCCACCTCCTCCTTTTCTTCCTCCTCTCTTCCT
TCTTGTTCAAGGAGAGGGAGGACGCGTTTCCTTACTCCCTCCTCCTTTCC
TTCCTCCCCTCTTCCTTCTTGGTCAAGGAGAGGGAGGACGCGTTCCCTCA
CCCCTCTTCCTGCCAGGGCGGTCGGAGGGGGAGGGGAGGGAGGGAAGAGG
AAGCCCAAAGGGAAGAAGAAGGGCGAGGAGGAGGAGAAAGAGGATCTCAT
GAAAGAGTGGGGGGGCAATTTTGTGGGCCGGAAGAAGCTTTTCAGCGCCC
CGACAAAGGGTGGAGGGGAGGAAGGGCAAGGGCTGAAGGCAGCGGGCGGA
GGAAGGGTAGGAGGGGGAGAAAAAGGGGGGCCGGTGGCGCGCTCGAGTGG
GGACCAACTCAAGAAGCTGAGCAAGACCGGTCGGCAGGTGAGGAGGGAGG
GAGGGAGG
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Synonyms
Publications