rna4670, rna4670 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4670
Unique Name	rna4670
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1406
Alignment location	CM002464.1:16635..18364 +

Link to JBrowse

Properties


Property Name	Value
Product	fatty acid hydroxylase-like protein
Orig transcript id	gnl\|cribi\|Naga_100150g7.10688.mrna
Orig protein id	gnl\|cribi\|Naga_100150g7.10688
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:16635..18364 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100150g7	gene4508	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4670	rna4670-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26012.1	cds4658	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:16635..18364+
coding sequence from alignment at CM002464.1:16635..18364+

mRNA sequence

>rna4670 ID=rna4670|Name=rna4670|organism=Nannochloropsis gaditana|type=mRNA|length=1406bp
TGCACTTGCCTTCCTCGGGTGTCCAACCCCGTTCAACCCCGTCGCGCTTA
CGTATGTCACAGTAAACCAATTACATGGAATGCACCTATGCTTGCTTACC
ATAGTATGCATAATCAGGAGCTGATGTCACCAACATAAGAAGTAATTTCT
CACACAAGCAGTGCGACTTCCTCAGTCTTCCACGCATACAGTAGGTCGAT
GCGTGCAACGCCTGCGAGTCAGTCATCCTTCCTATTCTTCGTCTTCTTCT
GGAGCCTGATATCCTCTCCTGTTTCGGGATTTCTCTTGCAACATCCTTTT
TCAAGAAAACACCAATCTTGTAGCAGATGTCTCTCTTCACCCGAACTCGG
TCCCCTCCCCGGCCCTGCTCCCGGGCCTCCTCCCGAGCCCTCTCCTCCCC
TGCCCAGTAAAGGCATTGTCACCGTTCTAGGGCCGGATGGCGCGCAGCTC
AGAGTGATTGAAGCGAAGCCCGGATCCAACCTGAGAAAGACCCTACAAGC
CAGCAAGATCGACGTGTACGACCTGATGGGCAAGATGACCAATTGCAATG
GAGCGGGTCAATGCGGCACTTGCGTCGTAAAAGTCACTAGCCCGTCCTGG
GGTCTCCGCAGTGAGTATGAGGCAGACAAGATTCTCAAAGGGAGAAAATT
CGGGGAAAGCGAGGAGTATCGATTAGCCTGTCAAACGACAGTAGAAAGAG
GGGAGGCGACTGTGGTGGTTCGACCGCCCAAGAAAGGAAAATGACCATTG
GAGATGACGCAAGCAAAAGCAACTGGAAAGAAAGAGGACGTTTTGCCAAT
GCACGTGCGCCTTTTTCAAATCTGTAGTCTTTCTTTCTCCTGTCGTCCTG
CACATTTGTTGTTATGATGAGGAATTACTATTCCCACGCCCCTTGGATTT
GCAGCATGCTCCAGCCTTCTAGGATCAGAGCCTCGGCCACGGCATTACAA
GGTGGACCCGCATCTCCGATAACGCTCCCTAGATTAATGCCCGTGCTATT
CATATAGCGAGACAATGTCTTTCGATCCTGTCTGTTATTCGCCAGCGAGG
AGAGAGCGCGAAACGAACAAGCGCAATCATCTGCAAGACAGGAAGGGGGA
AGACAGTAAGGAGAGATGAGAAGTCATTGAGAGGAGGGAGAAAGCCATGC
GTGGATACACAAACTTACATGCACATGCGTCACTTATGTGGCTAGAATTT
TTACTATTAAATCCGAACAGCCCTGTTTGGAGAAAAAAAAAGTTACATCT
CTTTCCCGTACAAATTATGTCCTTTCATAGTAATTGCCCTCACCTCGATT
CACACTTCCATCCGCCAAAATGTTCTTTGCATAACACCGGAGTTCTGAGG
CAGCTTTGGCAAATGTTAAAGCCTGGTTGCACTGAGGCAAAAAACCACCG
TTCTCA

protein sequence of rna4670

>rna4670-protein ID=rna4670-protein|Name=rna4670|organism=Nannochloropsis gaditana|type=polypeptide|length=380bp
MIYDLMPLQPLRHIQTSMWSSTVRTGPETPVASFILPTRPSLPFLLQHTV
DPTSNFPRRPTTSTSWQVSTIASSQPVGNTYWTQQHLNSLSLVNTPGQTR
KLIVPAGKKPAVDSHSISTLPVSAPRGSLPSQTSLLPSPKRLVDARQLPP
SVVHQNLATDFSVPRTLSAALWMFFTHPSILLILCGLAGLVAGRFSFSGP
SSSLLQIFLECSLVLLTIVGWILQEWFLHRFLLHSSFDWFGREIHAQHHA
LPFYHVSIDPPLLVGVWGAIACILGWVFVPRPLVWTVLGTYWIMGLFYEW
AHFSVHTRVRPRTALGKAIKAHHTKHHLLDERFWFAFSWPMIDASLGTVP
AKELEGKEARAKKAKERRGSKGFPSKKGPM

mRNA from alignment at CM002464.1:16635..18364+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4670 ID=rna4670|Name=rna4670|organism=Nannochloropsis gaditana|type=mRNA|length=1730bp|location=Sequence derived from alignment at CM002464.1:16635..18364+ (Nannochloropsis gaditana)
TCAAGACCTGAGGGCTGAGTTATCAGGGATTACATCATAGCCTGTTGTCG
CTCCTTATTCAAAGTCTTCCTGACAACGGACGGCAGCTCCCGGCCGGCAT
GATATACGATCTCATGCCTTTACAACCTCTACGACACATCCAGACCTCCA
TGTGGAGCTCTACTGTTAGAACAGGGCCTGAAACACCTGTGGCATCTTTT
ATTTTGCCGACGAGACCGTCATTGCCGTTCCTGCTACAGCACACAGTAGA
CCCTACCTCAAACTTCCCGAGGCGCCCTACGACTTCTACATCATGGCAAG
TGTCGACGATTGCATCCAGTCAGCCCGTCGGGAACACCTATTGGACTCAA
CAACACCTCAATTCGCTATCTCTTGTAAACACGCCGGGACAGACGAGGAA
GCTGATCGTACCGGTAAGAGTTGTGACTCTTAActccgccccttcttccc
tccctccccccccccctcccaccttttcTTATTATAAACATGTTCTCAAA
GCGTAAACTCTTCCCTATCTTTCTCCCCAACACTCTGTTTCACCTCAAGG
CCGGCAAAAAACCCGCAGTAGATAGTCATTCAATCTCGACTCTGCCTGTT
TCCGCACCTCGTGGATCCCTACCTTCCCAGACTAGTCTCCTTCCGTCACC
CAAAAGATTAGTAGACGCCCGGCAGCTACCGCCTTCGGTTGTTCATCAAA
ATCTAGCAACCGATTTCTCCGTTCCCAGGACCCTTTCTGCCGCACTGTGG
ATGTTTTTCACCCATCCATCCATCCTTCTTATACTATGTGGCCTCGCAGG
GCTTGTGGCGGGCCGATTTTCTTTCAGcggtccttcctcctcccttttgc
aGATTTTTCTCGAGTGCTCTCTGGTCCTGCTCACAATTGTAGGCTGGATT
CTGCAGGAGTGGTTCCTCCACcgttttctcctccacagtTCCTTTGACTG
GTTTGGTAGGGAGATCCACGCACAGCATCATGCATTGCCCTTCTACCATG
TCTCCATCGACCCTCCCCTGTTAGTAGGCGTCTGGGGCGCTATAGCTTGC
ATCCTTGGGTGGGTGTTTGTTCCGCGGCCGCTAGTGTGGACGGTGTTGGG
GGTGAGTGCGACACTGAGAGGATCGCAGTAACATGACTACTTTTTAGCCT
CACGCGATTTCCTGTCCTCacttccctccattccttcccttcacccCTCA
GACCTATTGGATCATGGGCTTATTCTACGAATGGGCCCATTTTAGCGTGC
ACACCCGCGTGAGGCCTCGCACTGCGCTTGGGAAAGCCATCAAAGCCCAC
CACACCAAGCATCATCTCCTGGACGAGCGCTTTTGGTTCGCGTTTTCCTG
GCCAATGATCGACGCCTCGCTCGGTACAGTGCCAGCAAAAGaattggaag
gaaaggaagcacgagcaaagaaagccaaggagagaagaggaagtaaGGGC
TTTCCGAGCAAGAAGGGTCCTATGTGAAGAAATGAGAGCGTTGGGTCTTG
TGCAGTGCTCCGGCTGGATGGGAAGGCACTGTAGGGGGCGTCACCCACGT
GGAGTGTAACAGTAACATTTGTGCATGTGTGtgtgaaaggaggaggagga
ggtaacgATTGTCGGCACAAAAAGCAGGACCGGGGCATCAAATGCGTATG
ACTACTTTTTCATTTTCAGTTTAGCTTGGTCCCGACACTCCCTCATCGTT
TACATCACATCCCGAAGGCGCAAACCCAGG

Coding sequence (CDS) from alignment at CM002464.1:16635..18364+

>rna4670 ID=rna4670|Name=rna4670|organism=Nannochloropsis gaditana|type=CDS|length=3429bp|location=Sequence derived from alignment at CM002464.1:16635..18364+ (Nannochloropsis gaditana)
ATGATATACGATCTCATGCCTTTACAACCTCTACGACACATCCAGACCTC
CATGTGGAGCTCTACTGTTAGAACAGGGCCTGAAACACCTGTGGCATCTT
TTATTTTGCCGACGAGACCGTCATTGCCGTTCCTGCTACAGCACACAGTA
GACCCTACCTCAAACTTCCCGAGGCGCCCTACGACTTCTACATCATGGCA
AGTGTCGACGATTGCATCCAGTCAGCCCGTCGGGAACACCTATTGGACTC
AACAACACCTCAATTCGCTATCTCTTGTAAACACGCCGGGACAGACGAGG
AAGCTGATCGTACCGGCCGGCAAAAAACCCGCAGTAGATAGTCATTCAAT
CTCGACTCTGCCTGTTTCCGCACCTCGTGGATCCCTACCTTCCCAGACTA
GTCTCCTTCCGTCACCCAAAAGATTAGTAGACGCCCGGCAGCTACCGCCT
TCGGTTGTTCATCAAAATCTAGCAACCGATTTCTCCGTTCCCAGGACCCT
TTCTGCCGCACTGTGGATGTTTTTCACCCATCCATCCATCCTTCTTATAC
TATGTGGCCTCGCAGGGCTTGTGGCGGGCCGATTTTCTTTCAGcggtcct
tcctcctcccttttgcaGATTTTTCTCGAGTGCTCTCTGGTCCTGCTCAC
AATTGTAGGCTGGATTCTGCAGGAGTGGTTCCTCCACcgttttctcctcc
acagtTCCTTTGACTGGTTTGGTAGGGAGATCCACGCACAGCATCATGCA
TTGCCCTTCTACCATGTCTCCATCGACCCTCCCCTGTTAGTAGGCGTCTG
GGGCGCTATAGCTTGCATCCTTGGGTGGGTGTTTGTTCCGCGGCCGCTAG
TGTGGACGGTGTTGGGGACCTATTGGATCATGGGCTTATTCTACGAATGG
GCCCATTTTAGCGTGCACACCCGCGTGAGGCCTCGCACTGCGCTTGGGAA
AGCCATCAAAGCCCACCACACCAAGCATCATCTCCTGGACGAGCGCTTTT
GGTTCGCGTTTTCCTGGCCAATGATCGACGCCTCGCTCGGTACAGTGCCA
GCAAAAGaattggaaggaaaggaagcacgagcaaagaaagccaaggagag
aagaggaagtaaGGGCTTTCCGAGCAAGAAGGGTCCTATGTGAATGATAT
ACGATCTCATGCCTTTACAACCTCTACGACACATCCAGACCTCCATGTGG
AGCTCTACTGTTAGAACAGGGCCTGAAACACCTGTGGCATCTTTTATTTT
GCCGACGAGACCGTCATTGCCGTTCCTGCTACAGCACACAGTAGACCCTA
CCTCAAACTTCCCGAGGCGCCCTACGACTTCTACATCATGGCAAGTGTCG
ACGATTGCATCCAGTCAGCCCGTCGGGAACACCTATTGGACTCAACAACA
CCTCAATTCGCTATCTCTTGTAAACACGCCGGGACAGACGAGGAAGCTGA
TCGTACCGGCCGGCAAAAAACCCGCAGTAGATAGTCATTCAATCTCGACT
CTGCCTGTTTCCGCACCTCGTGGATCCCTACCTTCCCAGACTAGTCTCCT
TCCGTCACCCAAAAGATTAGTAGACGCCCGGCAGCTACCGCCTTCGGTTG
TTCATCAAAATCTAGCAACCGATTTCTCCGTTCCCAGGACCCTTTCTGCC
GCACTGTGGATGTTTTTCACCCATCCATCCATCCTTCTTATACTATGTGG
CCTCGCAGGGCTTGTGGCGGGCCGATTTTCTTTCAGcggtccttcctcct
cccttttgcaGATTTTTCTCGAGTGCTCTCTGGTCCTGCTCACAATTGTA
GGCTGGATTCTGCAGGAGTGGTTCCTCCACcgttttctcctccacagtTC
CTTTGACTGGTTTGGTAGGGAGATCCACGCACAGCATCATGCATTGCCCT
TCTACCATGTCTCCATCGACCCTCCCCTGTTAGTAGGCGTCTGGGGCGCT
ATAGCTTGCATCCTTGGGTGGGTGTTTGTTCCGCGGCCGCTAGTGTGGAC
GGTGTTGGGGACCTATTGGATCATGGGCTTATTCTACGAATGGGCCCATT
TTAGCGTGCACACCCGCGTGAGGCCTCGCACTGCGCTTGGGAAAGCCATC
AAAGCCCACCACACCAAGCATCATCTCCTGGACGAGCGCTTTTGGTTCGC
GTTTTCCTGGCCAATGATCGACGCCTCGCTCGGTACAGTGCCAGCAAAAG
aattggaaggaaaggaagcacgagcaaagaaagccaaggagagaagagga
agtaaGGGCTTTCCGAGCAAGAAGGGTCCTATGTGAATGATATACGATCT
CATGCCTTTACAACCTCTACGACACATCCAGACCTCCATGTGGAGCTCTA
CTGTTAGAACAGGGCCTGAAACACCTGTGGCATCTTTTATTTTGCCGACG
AGACCGTCATTGCCGTTCCTGCTACAGCACACAGTAGACCCTACCTCAAA
CTTCCCGAGGCGCCCTACGACTTCTACATCATGGCAAGTGTCGACGATTG
CATCCAGTCAGCCCGTCGGGAACACCTATTGGACTCAACAACACCTCAAT
TCGCTATCTCTTGTAAACACGCCGGGACAGACGAGGAAGCTGATCGTACC
GGCCGGCAAAAAACCCGCAGTAGATAGTCATTCAATCTCGACTCTGCCTG
TTTCCGCACCTCGTGGATCCCTACCTTCCCAGACTAGTCTCCTTCCGTCA
CCCAAAAGATTAGTAGACGCCCGGCAGCTACCGCCTTCGGTTGTTCATCA
AAATCTAGCAACCGATTTCTCCGTTCCCAGGACCCTTTCTGCCGCACTGT
GGATGTTTTTCACCCATCCATCCATCCTTCTTATACTATGTGGCCTCGCA
GGGCTTGTGGCGGGCCGATTTTCTTTCAGcggtccttcctcctccctttt
gcaGATTTTTCTCGAGTGCTCTCTGGTCCTGCTCACAATTGTAGGCTGGA
TTCTGCAGGAGTGGTTCCTCCACcgttttctcctccacagtTCCTTTGAC
TGGTTTGGTAGGGAGATCCACGCACAGCATCATGCATTGCCCTTCTACCA
TGTCTCCATCGACCCTCCCCTGTTAGTAGGCGTCTGGGGCGCTATAGCTT
GCATCCTTGGGTGGGTGTTTGTTCCGCGGCCGCTAGTGTGGACGGTGTTG
GGGACCTATTGGATCATGGGCTTATTCTACGAATGGGCCCATTTTAGCGT
GCACACCCGCGTGAGGCCTCGCACTGCGCTTGGGAAAGCCATCAAAGCCC
ACCACACCAAGCATCATCTCCTGGACGAGCGCTTTTGGTTCGCGTTTTCC
TGGCCAATGATCGACGCCTCGCTCGGTACAGTGCCAGCAAAAGaattgga
aggaaaggaagcacgagcaaagaaagccaaggagagaagaggaagtaaGG
GCTTTCCGAGCAAGAAGGGTCCTATGTGA

Synonyms

Publications