rna4666, rna4666 (mRNA) Nannochloropsis gaditana

Overview
Namerna4666
Unique Namerna4666
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1104
Alignment locationCM002464.1:11761..12805 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100150g3.10685.mrna
Orig protein idgnl|cribi|Naga_100150g3.10685
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:11761..12805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100150g3gene4504Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4666rna4666-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26009.1cds4654Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4666 ID=rna4666|Name=rna4666|organism=Nannochloropsis gaditana|type=mRNA|length=1104bp
CCCCCCAGTCCTGAACTTCTGCCTGACGCCCTCCCCTCCCGCTCGGTCCA
CATGGCCGACCCCCTCCTCCCCCTCGGCCTCTTCACCGCCGTGGCCGATG
CCTACCTGCCCTCCCTCACGACGGACCCCTCCCGGGACCCGCTCATTTCC
CCCTACTTCGCCCACGATAAGCTCCTCAGTCGCTTTCCCCCCACTTTTAT
CGGTGTGGGCGGATTCGACCCCCTTCTGGATGACACGGTGGACTTCGACT
GCCGTCTTCGCCACGTGGGCGTTCCCTCCACGCTCCGGCTTGGGCGGGAC
TTGCCCCACGGCTTCCTCGGTCTCTACGGGCTCGACAGGGCTGCTACTGC
CATCATGGAGGAGGCAGGCCGCTTCCTTGCCAGAGAGGGAGGGGGGGATG
AGGGGGTCAAGGGGGGCGCCGGGGGGATGGACGGGATGATTGTAGAGACC
GGGCTGATGCAGGGCGAAACTGGGGAGGAGGTGGCGTGCGATGTGGGGGC
TGCTGTTGGTGGAGAAGGACTCCTAGGGATTGCCACGGAGGAAGAATAAT
GCACGTGAAGAAAAATGCGGACTTTCATGTCCGTCAAAAGTATATGAAGA
TTGAGAATTACTGAAGGGGAAGATTCTCCGCGCCTGTGGTACACAAAGGG
GAAATAGTCTGGGCGGGAGCTCTATGTATGCATATTGGGGGGGGATTTGT
GCGATGAGGAGATGCACTTTTGAGGCAGTGGATTGCGGAAGCGATCACGG
TGGACTGCGTCCATATTGAAACCTTTGTTGGGCTTCTCTTGAAAGGTATT
CGAAAAAATAAATGCATGTTAAATTTAAAAGCACCGGGTCTTGACTTTGC
TGTGAAAAAATTGTTGCACTCACGAAGAATCAGACGGAAGTCCGTTACCG
AGCTTTTGAAATTGATGTCTTGGTATAAAATCTTCCATGAAAAGATGAAA
AGTGCATGCGCACATGACCTTGCTTTTCTGCGAGGAGCCGTCAGCACAAC
CTGGTACCCTACATCACTTATCGCTCAAGACATCAAATGTTTCAAGTTCG
GCGTCACAAGCTGACTTGCTTTTAACACGTGCTGTGTAACCTACCCCGTG
GGAC
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protein sequence of rna4666

>rna4666-protein ID=rna4666-protein|Name=rna4666|organism=Nannochloropsis gaditana|type=polypeptide|length=129bp
MSGGGPVLKPSTLRAWKVATGVICLVTGFQLVFLTDYGDKEHVFTPIQRW
YMGQLDSLLGVESEVARRLRTPTFSLNSSKEAEESARAATAAPQPDVNLS
HSPSMPAKAGEGVREGRESGGWRRWISWW
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mRNA from alignment at CM002464.1:11761..12805+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4666 ID=rna4666|Name=rna4666|organism=Nannochloropsis gaditana|type=mRNA|length=1045bp|location=Sequence derived from alignment at CM002464.1:11761..12805+ (Nannochloropsis gaditana)
GGCCTCACCATAGTGGAGCCGAGGGCTAGTATTACGATGTTTGGCCGCAT
TCTATTCGTCAGACATCTGTCTTTATTTCTTTGCACATGGTTGAGCTTCG
TTCTCAAGTCCTGCTTCGAGACGTCGTCATACGCATACACAGGGCAGCTG
AGGGGCCTTGCATGTCCTTTGTGACCTTTTAACAGTACTCCTAAAACAAT
GCCAAAAAGCATGCAGTGACTTTGTTAATGATCTTTTTGGAGCAGTGGTG
CTTCTCTATGGCGTGATAACGACATCCTCTTGTCGCCATCGTTTCTCACG
caaacctccttcctcagctCTTGGGACAGGCCTTGACACTTGAAAGTATG
TCAGGAGGGGGCCCAGTCTTGAAGCCTTCGACACTGCGAGCGTGGTATGT
ATGTGGATTGTATGACGTTGTAAACTGATAGGATGCTCATAATTTTTTTT
TCTACCTCGCTTTCGTGAACAACTCGCCTCAGGAAAGTGGCAACGGGCGT
TATTTGTCTTGTCACGGGCTTCCAACTAGTCTTTCTGACAGACTATGGGG
ACAAAGAGCATGTCTTTACACCGGTATGTGCGTTGCAGGTGTGACGGAGG
TGACAAATGTTTGAGTGCCCGAGGTTTACTTCTTCCTCACTGCCTCGCCA
ATACGACAACCTTTGTTCACATCGTCCAATGATCTTTTCCAGTGCCATTC
CACAATTCAAACCCTCAGTGCTAACATTTTTTCTCCGTTCTCATGTTGTA
TAATCAGATTCAGCGGTGGTACATGGGTCAATTGGATAGCTTGCTCGGTG
TCGAGAGTGAAGTAGCCCGCCGGCTCAGGACCCCCACGTTCAGCCTCAAT
TCTTCCAAAGAGGCAGAAGAGAGTGCACGCGCTGCCACTGCGGCTCCACA
ACCAGACGTCAATTTGTCACACTCCCCCTCTATGCCcgcgaaggcggggg
agggagttagggaaggaagggaatcgggtggatggagaagatggaTATCC
TGGTGGTAAAAATAAGCGAGGCATACATACATACGTGCATTTTCC
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Coding sequence (CDS) from alignment at CM002464.1:11761..12805+

>rna4666 ID=rna4666|Name=rna4666|organism=Nannochloropsis gaditana|type=CDS|length=1170bp|location=Sequence derived from alignment at CM002464.1:11761..12805+ (Nannochloropsis gaditana)
ATGTCAGGAGGGGGCCCAGTCTTGAAGCCTTCGACACTGCGAGCGTGGAA
AGTGGCAACGGGCGTTATTTGTCTTGTCACGGGCTTCCAACTAGTCTTTC
TGACAGACTATGGGGACAAAGAGCATGTCTTTACACCGATTCAGCGGTGG
TACATGGGTCAATTGGATAGCTTGCTCGGTGTCGAGAGTGAAGTAGCCCG
CCGGCTCAGGACCCCCACGTTCAGCCTCAATTCTTCCAAAGAGGCAGAAG
AGAGTGCACGCGCTGCCACTGCGGCTCCACAACCAGACGTCAATTTGTCA
CACTCCCCCTCTATGCCcgcgaaggcgggggagggagttagggaaggaag
ggaatcgggtggatggagaagatggaTATCCTGGTGGTAAATGTCAGGAG
GGGGCCCAGTCTTGAAGCCTTCGACACTGCGAGCGTGGAAAGTGGCAACG
GGCGTTATTTGTCTTGTCACGGGCTTCCAACTAGTCTTTCTGACAGACTA
TGGGGACAAAGAGCATGTCTTTACACCGATTCAGCGGTGGTACATGGGTC
AATTGGATAGCTTGCTCGGTGTCGAGAGTGAAGTAGCCCGCCGGCTCAGG
ACCCCCACGTTCAGCCTCAATTCTTCCAAAGAGGCAGAAGAGAGTGCACG
CGCTGCCACTGCGGCTCCACAACCAGACGTCAATTTGTCACACTCCCCCT
CTATGCCcgcgaaggcgggggagggagttagggaaggaagggaatcgggt
ggatggagaagatggaTATCCTGGTGGTAAATGTCAGGAGGGGGCCCAGT
CTTGAAGCCTTCGACACTGCGAGCGTGGAAAGTGGCAACGGGCGTTATTT
GTCTTGTCACGGGCTTCCAACTAGTCTTTCTGACAGACTATGGGGACAAA
GAGCATGTCTTTACACCGATTCAGCGGTGGTACATGGGTCAATTGGATAG
CTTGCTCGGTGTCGAGAGTGAAGTAGCCCGCCGGCTCAGGACCCCCACGT
TCAGCCTCAATTCTTCCAAAGAGGCAGAAGAGAGTGCACGCGCTGCCACT
GCGGCTCCACAACCAGACGTCAATTTGTCACACTCCCCCTCTATGCCcgc
gaaggcgggggagggagttagggaaggaagggaatcgggtggatggagaa
gatggaTATCCTGGTGGTAA
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Synonyms
Publications