EWM26009.1, cds4654 (CDS) Nannochloropsis gaditana

Overview
NameEWM26009.1
Unique Namecds4654
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:12108..12154 +
Alignment locationCM002464.1:12243..12333 +
Alignment locationCM002464.1:12518..12769 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26009.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100150g3.10685.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:12108..12154 +
CM002464.1supercontigCM002464.1:12243..12333 +
CM002464.1supercontigCM002464.1:12518..12769 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM26009.1 vs. NCBI_GenBank
Match: gi|553185819|ref|XP_005854314.1| (hypothetical protein NGA_0190800 [Nannochloropsis gaditana CCMP526] >gi|422294753|gb|EKU22053.1| hypothetical protein NGA_0190800 [Nannochloropsis gaditana CCMP526] >gi|585107924|gb|EWM26009.1| hypothetical protein Naga_100150g3 [Nannochloropsis gaditana])

HSP 1 Score: 264.618 bits (675), Expect = 1.420e-89
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 
Query:    1 MSGGGPVLKPSTLRAWKVATGVICLVTGFQLVFLTDYGDKEHVFTPIQRWYMGQLDSLLGVESEVARRLRTPTFSLNSSKEAEESARAATAAPQPDVNLSHSPSMPAKAGEGVREGRESGGWRRWISWW 129
            MSGGGPVLKPSTLRAWKVATGVICLVTGFQLVFLTDYGDKEHVFTPIQRWYMGQLDSLLGVESEVARRLRTPTFSLNSSKEAEESARAATAAPQPDVNLSHSPSMPAKAGEGVREGRESGGWRRWISWW
Sbjct:    1 MSGGGPVLKPSTLRAWKVATGVICLVTGFQLVFLTDYGDKEHVFTPIQRWYMGQLDSLLGVESEVARRLRTPTFSLNSSKEAEESARAATAAPQPDVNLSHSPSMPAKAGEGVREGRESGGWRRWISWW 129
The following BLAST results are available for this feature:
BLAST of EWM26009.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|553185819|ref|XP_005854314.1|1.420e-89100.00hypothetical protein NGA_0190800 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4666rna4666Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications