rna4655, rna4655 (mRNA) Nannochloropsis gaditana

Overview
Namerna4655
Unique Namerna4655
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length600
Alignment locationCM002463.1:1156390..1157086 +

Link to JBrowse

Properties
Property NameValue
Producttranscription factor jmjc domain-containing protein
Orig transcript idgnl|cribi|Naga_102508g1.7359.mrna
Orig protein idgnl|cribi|Naga_102508g1.7359
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1156390..1157086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102508g1gene4492Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4655rna4655-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26030.1cds4643Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4655 ID=rna4655|Name=rna4655|organism=Nannochloropsis gaditana|type=mRNA|length=600bp
CGAGGGAGCAATCGTTCGTTCTCAGGATGTACACATTCCTCTCTCATTCC
ATTACCTAGAGCACACACAGCCATGAATGCACCTCTTCATGACCACAGCG
CTCTAACCCTGGCGGGAAGGGCAGCACACTCAGCAGTCATTGTCACAGGG
TCCAGGAACGAGCCCCCTTTCTCGCCTCTCACGGGCAGTAGCAGTGCAAC
TTCGCAACCTCCCCCCCTCCCCCGCCCAAGTCCTCAAAAAAAAAGCACTC
CCACCGACAAACGAAAAATTGTGACGAGTGTGGATAGCGTAGAGCCTCTT
AGGAAAAAGACAATCGCTACAGCTGGCGTCAAACGGGGCAGACACCCCTA
CGGTGTGCGGCCTCTGGGAAATTATTGGACGGAGGGGATGCCCGATGACA
TAGAGCGTCGGCAGAAGGGCTTGGGTCTCCGTGCCTTTGCCACCCTGGCC
GACGATGTTTTGGTCCACTCCGTCCTCTTCGTCCTCGACGCCGTCACCTT
AAGTCGTCTCTCCCGGTGTTCCCGCGCCTGGTACGTCTACAGCCACGCGT
ACACTGACGTGTGGAAGGCCCTGGTGCTTGGCAAGCTGGCGGAAGGGTGA
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protein sequence of rna4655

>rna4655-protein ID=rna4655-protein|Name=rna4655|organism=Nannochloropsis gaditana|type=polypeptide|length=131bp
PSLPPLKSRRKPPSWTNPRDSLLPSPSCPQVPKGNEMKSNQIKSNLLLFS
SSFFSFNFTRSRTLFPSSHQDPNSTAAWNAVVKGRKKWILFPPHLVPPGV
HPSADGRKGGRERGREGGRERGREGGKRGER
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mRNA from alignment at CM002463.1:1156390..1157086+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4655 ID=rna4655|Name=rna4655|organism=Nannochloropsis gaditana|type=mRNA|length=697bp|location=Sequence derived from alignment at CM002463.1:1156390..1157086+ (Nannochloropsis gaditana)
ccctccctccctcccttgaaGTCCCGAAGGAAGCCCCCTTCATGGACGAA
TCCTCGAgattctcttcttccctccccttcctgtcctcaaGTCCCCAAAG
GAAATGAAATGAAATCAAATCAAATCAAATCAaatcttcttctcttctcc
tcctccttcttctccttcaatTTCACCCGGAGCCgaaccctcttcccctc
ctcccaccaggATCCCAACTCGACGGCCGCCTGGAATGCAGTCGTAAAGG
GGCGGAAGAAGTGgattcttttccccccccatctgGTTCCTCCCGGGGTC
CACCCGTCTGCGGacggtaggaagggagggagggagagagggagggaggg
agggagggagagagggagagagggagggaaaaggggggaaaggtagcgtg
cggaggaagaaaagacgaTTTGCAGTGTTGACGGCGAGTATACGGTTGGG
GGGGAGCATCAGGACGCCTGAGGCGCAGAGCGGCTCCTTTGTGATGAAAA
ATGGATAGTTGTTGGCTGATGTCCCCCGATTTTTCTGCTCTGGTTCAATT
GCCTCACCCAGGTCTGGATCTGGCCACGCCAGTGACTCTCACGGAGTGGG
TGGAGGGCTTCTACAAGCAGGCcgtgaagggagaggggtggagggagggc
gtggtggaggcagtgTGTGACGCGGGAGAGATCGTCTTCGTACCTCG
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Coding sequence (CDS) from alignment at CM002463.1:1156390..1157086+

>rna4655 ID=rna4655|Name=rna4655|organism=Nannochloropsis gaditana|type=CDS|length=396bp|location=Sequence derived from alignment at CM002463.1:1156390..1157086+ (Nannochloropsis gaditana)
ccctccctccctcccttgaaGTCCCGAAGGAAGCCCCCTTCATGGACGAA
TCCTCGAgattctcttcttccctccccttcctgtcctcaaGTCCCCAAAG
GAAATGAAATGAAATCAAATCAAATCAAATCAaatcttcttctcttctcc
tcctccttcttctccttcaatTTCACCCGGAGCCgaaccctcttcccctc
ctcccaccaggATCCCAACTCGACGGCCGCCTGGAATGCAGTCGTAAAGG
GGCGGAAGAAGTGgattcttttccccccccatctgGTTCCTCCCGGGGTC
CACCCGTCTGCGGacggtaggaagggagggagggagagagggagggaggg
agggagggagagagggagagagggagggaaaaggggggaaaggtag
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Synonyms
Publications