EWM26030.1, cds4643 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26030.1 vs. NCBI_GenBank
Match: gi|585107948|gb|EWM26030.1| (transcription factor jmjc domain-containing protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 260.381 bits (664), Expect = 6.105e-88 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
Query: 1 PSLPPLKSRRKPPSWTNPRDSLLPSPSCPQVPKGNEMKSNQIKSNLLLFSSSFFSFNFTRSRTLFPSSHQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADGRKGGRERGREGGRERGREGGKRGER 131
PSLPPLKSRRKPPSWTNPRDSLLPSPSCPQVPKGNEMKSNQIKSNLLLFSSSFFSFNFTRSRTLFPSSHQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADGRKGGRERGREGGRERGREGGKRGER
Sbjct: 1 PSLPPLKSRRKPPSWTNPRDSLLPSPSCPQVPKGNEMKSNQIKSNLLLFSSSFFSFNFTRSRTLFPSSHQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADGRKGGRERGREGGRERGREGGKRGER 131
BLAST of EWM26030.1 vs. NCBI_GenBank
Match: gi|308801959|ref|XP_003078293.1| (putative protein (ISS) [Ostreococcus tauri]) HSP 1 Score: 80.1073 bits (196), Expect = 3.284e-15 Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0
Query: 69 HQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADG 106
HQDPN+T+AWNAVV GRKKWILFPPH+ PPGVHPSADG
Sbjct: 196 HQDPNATSAWNAVVNGRKKWILFPPHVTPPGVHPSADG 233
BLAST of EWM26030.1 vs. NCBI_GenBank
Match: gi|1199288849|gb|OUS43985.1| (hypothetical protein BE221DRAFT_79032 [Ostreococcus tauri]) HSP 1 Score: 80.1073 bits (196), Expect = 5.509e-15 Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0
Query: 69 HQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADG 106
HQDPN+T+AWNAVV GRKKWILFPPH+ PPGVHPSADG
Sbjct: 293 HQDPNATSAWNAVVNGRKKWILFPPHVTPPGVHPSADG 330
BLAST of EWM26030.1 vs. NCBI_GenBank
Match: gi|693500852|emb|CEF97225.1| (JmjC domain [Ostreococcus tauri]) HSP 1 Score: 80.1073 bits (196), Expect = 5.751e-15 Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0
Query: 69 HQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADG 106
HQDPN+T+AWNAVV GRKKWILFPPH+ PPGVHPSADG
Sbjct: 296 HQDPNATSAWNAVVNGRKKWILFPPHVTPPGVHPSADG 333
BLAST of EWM26030.1 vs. NCBI_GenBank
Match: gi|330805928|ref|XP_003290928.1| (hypothetical protein DICPUDRAFT_17195 [Dictyostelium purpureum] >gi|325078926|gb|EGC32552.1| hypothetical protein DICPUDRAFT_17195, partial [Dictyostelium purpureum]) HSP 1 Score: 77.0258 bits (188), Expect = 6.738e-14 Identity = 29/40 (72.50%), Postives = 36/40 (90.00%), Query Frame = 0
Query: 67 SSHQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADG 106
S H+DPN T+AWNAV+ GRKKW+++PPH+VPPGVHPS DG
Sbjct: 282 SFHKDPNHTSAWNAVITGRKKWVMYPPHVVPPGVHPSDDG 321
BLAST of EWM26030.1 vs. NCBI_GenBank
Match: gi|545369210|ref|XP_005649358.1| (Clavaminate synthase-like protein, partial [Coccomyxa subellipsoidea C-169] >gi|384251336|gb|EIE24814.1| Clavaminate synthase-like protein, partial [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 75.485 bits (184), Expect = 1.554e-13 Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 0
Query: 67 SSHQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADG 106
S H+DPN+T+AWNAV+KG KKWILFPPH+ PPGVH SADG
Sbjct: 221 SFHKDPNATSAWNAVIKGSKKWILFPPHVTPPGVHASADG 260
BLAST of EWM26030.1 vs. NCBI_GenBank
Match: gi|1002871892|ref|XP_015697698.1| (PREDICTED: F-box protein At5g06550 [Oryza brachyantha]) HSP 1 Score: 75.0998 bits (183), Expect = 2.987e-13 Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 0
Query: 67 SSHQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADGRK 108
S H DPNST+AWNAV+KG KKW++FPP +VPPGVHPSADG +
Sbjct: 366 SFHVDPNSTSAWNAVIKGAKKWVMFPPEVVPPGVHPSADGAE 407
BLAST of EWM26030.1 vs. NCBI_GenBank
Match: gi|641806694|gb|KDO36180.1| (hypothetical protein CISIN_1g042108mg, partial [Citrus sinensis]) HSP 1 Score: 74.7146 bits (182), Expect = 3.341e-13 Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 0
Query: 67 SSHQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADGRK 108
S H DPNST+AWNA++KG KKWILFPP +VPPGVHPS+DG +
Sbjct: 304 SFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAE 345
BLAST of EWM26030.1 vs. NCBI_GenBank
Match: gi|125577573|gb|EAZ18795.1| (hypothetical protein OsJ_34322 [Oryza sativa Japonica Group]) HSP 1 Score: 74.7146 bits (182), Expect = 3.885e-13 Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 0
Query: 67 SSHQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADG 106
S H DPNST+AWNAV+KG KKW++FPP +VPPGVHPSADG
Sbjct: 266 SFHVDPNSTSAWNAVIKGAKKWVMFPPEVVPPGVHPSADG 305
BLAST of EWM26030.1 vs. NCBI_GenBank
Match: gi|125534831|gb|EAY81379.1| (hypothetical protein OsI_36550 [Oryza sativa Indica Group]) HSP 1 Score: 74.7146 bits (182), Expect = 4.493e-13 Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 0
Query: 67 SSHQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADG 106
S H DPNST+AWNAV+KG KKW++FPP +VPPGVHPSADG
Sbjct: 343 SFHVDPNSTSAWNAVIKGAKKWVMFPPEVVPPGVHPSADG 382 The following BLAST results are available for this feature:
BLAST of EWM26030.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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