EWM26030.1, cds4643 (CDS) Nannochloropsis gaditana

Overview
NameEWM26030.1
Unique Namecds4643
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:1156390..1156785 +

Link to JBrowse

Properties
Property NameValue
Start range1156390
Start range.
Protein idEWM26030.1
Producttranscription factor jmjc domain-containing protein
Partialtrue
Orig transcript idgnl|cribi|Naga_102508g1.7359.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1156390..1156785 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0016043cellular component organization
GO:0009791post-embryonic development
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of EWM26030.1 vs. NCBI_GenBank
Match: gi|585107948|gb|EWM26030.1| (transcription factor jmjc domain-containing protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 260.381 bits (664), Expect = 6.105e-88
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
Query:    1 PSLPPLKSRRKPPSWTNPRDSLLPSPSCPQVPKGNEMKSNQIKSNLLLFSSSFFSFNFTRSRTLFPSSHQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADGRKGGRERGREGGRERGREGGKRGER 131
            PSLPPLKSRRKPPSWTNPRDSLLPSPSCPQVPKGNEMKSNQIKSNLLLFSSSFFSFNFTRSRTLFPSSHQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADGRKGGRERGREGGRERGREGGKRGER
Sbjct:    1 PSLPPLKSRRKPPSWTNPRDSLLPSPSCPQVPKGNEMKSNQIKSNLLLFSSSFFSFNFTRSRTLFPSSHQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADGRKGGRERGREGGRERGREGGKRGER 131          
BLAST of EWM26030.1 vs. NCBI_GenBank
Match: gi|308801959|ref|XP_003078293.1| (putative protein (ISS) [Ostreococcus tauri])

HSP 1 Score: 80.1073 bits (196), Expect = 3.284e-15
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0
Query:   69 HQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADG 106
            HQDPN+T+AWNAVV GRKKWILFPPH+ PPGVHPSADG
Sbjct:  196 HQDPNATSAWNAVVNGRKKWILFPPHVTPPGVHPSADG 233          
BLAST of EWM26030.1 vs. NCBI_GenBank
Match: gi|1199288849|gb|OUS43985.1| (hypothetical protein BE221DRAFT_79032 [Ostreococcus tauri])

HSP 1 Score: 80.1073 bits (196), Expect = 5.509e-15
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0
Query:   69 HQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADG 106
            HQDPN+T+AWNAVV GRKKWILFPPH+ PPGVHPSADG
Sbjct:  293 HQDPNATSAWNAVVNGRKKWILFPPHVTPPGVHPSADG 330          
BLAST of EWM26030.1 vs. NCBI_GenBank
Match: gi|693500852|emb|CEF97225.1| (JmjC domain [Ostreococcus tauri])

HSP 1 Score: 80.1073 bits (196), Expect = 5.751e-15
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0
Query:   69 HQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADG 106
            HQDPN+T+AWNAVV GRKKWILFPPH+ PPGVHPSADG
Sbjct:  296 HQDPNATSAWNAVVNGRKKWILFPPHVTPPGVHPSADG 333          
BLAST of EWM26030.1 vs. NCBI_GenBank
Match: gi|330805928|ref|XP_003290928.1| (hypothetical protein DICPUDRAFT_17195 [Dictyostelium purpureum] >gi|325078926|gb|EGC32552.1| hypothetical protein DICPUDRAFT_17195, partial [Dictyostelium purpureum])

HSP 1 Score: 77.0258 bits (188), Expect = 6.738e-14
Identity = 29/40 (72.50%), Postives = 36/40 (90.00%), Query Frame = 0
Query:   67 SSHQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADG 106
            S H+DPN T+AWNAV+ GRKKW+++PPH+VPPGVHPS DG
Sbjct:  282 SFHKDPNHTSAWNAVITGRKKWVMYPPHVVPPGVHPSDDG 321          
BLAST of EWM26030.1 vs. NCBI_GenBank
Match: gi|545369210|ref|XP_005649358.1| (Clavaminate synthase-like protein, partial [Coccomyxa subellipsoidea C-169] >gi|384251336|gb|EIE24814.1| Clavaminate synthase-like protein, partial [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 75.485 bits (184), Expect = 1.554e-13
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 0
Query:   67 SSHQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADG 106
            S H+DPN+T+AWNAV+KG KKWILFPPH+ PPGVH SADG
Sbjct:  221 SFHKDPNATSAWNAVIKGSKKWILFPPHVTPPGVHASADG 260          
BLAST of EWM26030.1 vs. NCBI_GenBank
Match: gi|1002871892|ref|XP_015697698.1| (PREDICTED: F-box protein At5g06550 [Oryza brachyantha])

HSP 1 Score: 75.0998 bits (183), Expect = 2.987e-13
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 0
Query:   67 SSHQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADGRK 108
            S H DPNST+AWNAV+KG KKW++FPP +VPPGVHPSADG +
Sbjct:  366 SFHVDPNSTSAWNAVIKGAKKWVMFPPEVVPPGVHPSADGAE 407          
BLAST of EWM26030.1 vs. NCBI_GenBank
Match: gi|641806694|gb|KDO36180.1| (hypothetical protein CISIN_1g042108mg, partial [Citrus sinensis])

HSP 1 Score: 74.7146 bits (182), Expect = 3.341e-13
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 0
Query:   67 SSHQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADGRK 108
            S H DPNST+AWNA++KG KKWILFPP +VPPGVHPS+DG +
Sbjct:  304 SFHMDPNSTSAWNAIIKGSKKWILFPPDVVPPGVHPSSDGAE 345          
BLAST of EWM26030.1 vs. NCBI_GenBank
Match: gi|125577573|gb|EAZ18795.1| (hypothetical protein OsJ_34322 [Oryza sativa Japonica Group])

HSP 1 Score: 74.7146 bits (182), Expect = 3.885e-13
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 0
Query:   67 SSHQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADG 106
            S H DPNST+AWNAV+KG KKW++FPP +VPPGVHPSADG
Sbjct:  266 SFHVDPNSTSAWNAVIKGAKKWVMFPPEVVPPGVHPSADG 305          
BLAST of EWM26030.1 vs. NCBI_GenBank
Match: gi|125534831|gb|EAY81379.1| (hypothetical protein OsI_36550 [Oryza sativa Indica Group])

HSP 1 Score: 74.7146 bits (182), Expect = 4.493e-13
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 0
Query:   67 SSHQDPNSTAAWNAVVKGRKKWILFPPHLVPPGVHPSADG 106
            S H DPNST+AWNAV+KG KKW++FPP +VPPGVHPSADG
Sbjct:  343 SFHVDPNSTSAWNAVIKGAKKWVMFPPEVVPPGVHPSADG 382          
The following BLAST results are available for this feature:
BLAST of EWM26030.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107948|gb|EWM26030.1|6.105e-88100.00transcription factor jmjc domain-containing protei... [more]
gi|308801959|ref|XP_003078293.1|3.284e-1586.84putative protein (ISS) [Ostreococcus tauri][more]
gi|1199288849|gb|OUS43985.1|5.509e-1586.84hypothetical protein BE221DRAFT_79032 [Ostreococcu... [more]
gi|693500852|emb|CEF97225.1|5.751e-1586.84JmjC domain [Ostreococcus tauri][more]
gi|330805928|ref|XP_003290928.1|6.738e-1472.50hypothetical protein DICPUDRAFT_17195 [Dictyosteli... [more]
gi|545369210|ref|XP_005649358.1|1.554e-1377.50Clavaminate synthase-like protein, partial [Coccom... [more]
gi|1002871892|ref|XP_015697698.1|2.987e-1373.81PREDICTED: F-box protein At5g06550 [Oryza brachyan... [more]
gi|641806694|gb|KDO36180.1|3.341e-1373.81hypothetical protein CISIN_1g042108mg, partial [Ci... [more]
gi|125577573|gb|EAZ18795.1|3.885e-1377.50hypothetical protein OsJ_34322 [Oryza sativa Japon... [more]
gi|125534831|gb|EAY81379.1|4.493e-1377.50hypothetical protein OsI_36550 [Oryza sativa Indic... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4655rna4655Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications