rna4654, rna4654 (mRNA) Nannochloropsis gaditana

Overview
Namerna4654
Unique Namerna4654
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length566
Alignment locationCM002463.1:1155349..1156252 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101534g1.10612.mrna
Orig protein idgnl|cribi|Naga_101534g1.10612
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1155349..1156252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101534g1gene4491Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4654rna4654-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26032.1cds4642Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4654 ID=rna4654|Name=rna4654|organism=Nannochloropsis gaditana|type=mRNA|length=566bp
AGGTCGCCCGTTTACTTCACCATTTCTTTTTCTACATCAGAGACAAACTC
AGCTAGCATGCACGATGCGAAGGGGTAAACAAGGACGTGGCCAGACGCAG
TAGCGGCATAGGTGGAATGAAGGACAGGGTTTCGACACTCAGAGCTTGGA
AAGCCGCCATAGGTTTCCTGGTGGTTTCGACCGCCATGCTCCCCATAGGG
GCAGGCGCTCACCCTCCCATAGAGAGGCATCTTTCCGACTCCTCCATCCG
CCCCCCTGCAACCTTCCTCCGCGCAAGTCACCATAAATATACTCCCACTG
CTGTGTTGTCGACACCGTGGCAGCGGTTACTGCTTGAAGACGCCAACTGT
AGTACTCTCGCTTCCACATGCACGAGCTGTCTCTCTCTGCCCCCCCTTCG
AGAGGGGGAGGCTTGTGTATGGTGCCCTGGGGAGGGGGGATGTGTGGCGA
GCGCCGCCTGCACGGACGCCCGCGATTCATGTAGGGAGGGAGGGAGGGGG
GGAGGAAGGGAGGAAGGGAGGGAGGGCGGGAGGGTGGCAAAGAGGCGGAG
TATGGGGAGGGAATAG
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protein sequence of rna4654

>rna4654-protein ID=rna4654-protein|Name=rna4654|organism=Nannochloropsis gaditana|type=polypeptide|length=175bp
MNAPLHDHSALTLAGRAAHSAVIVTGSRNEPPFSPLTGSSSATSQPPPLP
RPSPQKKSTPTDKRKIVTSVDSVEPLRKKTIATAGVKRGRHPYGVRPLGN
YWTEGMPDDIERRQKGLGLRAFATLADDVLVHSVLFVLDAVTLSRLSRCS
RAWYVYSHAYTDVWKALVLGKLAEG
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mRNA from alignment at CM002463.1:1155349..1156252+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4654 ID=rna4654|Name=rna4654|organism=Nannochloropsis gaditana|type=mRNA|length=904bp|location=Sequence derived from alignment at CM002463.1:1155349..1156252+ (Nannochloropsis gaditana)
cgagggagcaATCGTTCGTTCTCAGGATGTACACATTCCTCTCTCATTCC
ATTACCTAGAGCACACACAGCCATGAATGCACCTCTTCATGACCACAGCG
CTCTAACCCTGGCGGGAAGGGCAGCACACTCAGCAGTCATTGTCACAGGG
TCCAGGAACGAGCCCCCTTTCTCGCCTCTCACGGGCAGTAGCAGTGCAAC
TTcgcaacctccccccctcccccgcccaagTCCTCAAAAAAAAAGCACTC
CCACCGACAAACGAAAAATTGTGACGAGTGTGGATAGCGTAGAGCCTCTT
AGGAAAAAGACAATCGCTACAGCTGGCGTCAAACGGGGCAGACACCCCTA
CGGTGTGCGGCCTCTGGGAAATTATTGGACGGAGGGGATGCCCGATGTAA
GATGGGGGGTATCTTGACTGGTATATATCATTATTATTACTATTGTTATA
TTTTATGATTTTATGACACTGGCATATACGTAGGACATGAAGCCATGTGC
GTGAGGACCTAATTTTCGTGCGTGACGGGGATCCTTTGTAAAAATCTGGG
AACCAAGCTGTCTTTGACCAGGCTTGTTGTGGATTCCCGTGCGTGTGGTT
CCGTACCGAGCAGGGTCCTCCGATTTTCCCGGCGCGTCGATCCCCTATCT
TGACCGTTTGTAGGCTGAACACATTCCCACCGCAATGCAACATCCTCTAG
GACATAGAGCGTCGGCAGAAGGGCTTGGGTCTCCGTGCCTTTGCCACCCT
GGCCGACGATGTTTTGGTCCActccgtcctcttcgtcctcgacgcCGTCA
CCTTAAGTCGTCTCTCCCGGTGTTCCCGCGCCTGGTACGTCTACAGCCAC
GCGTACACTGACGTGTGGAAGGCCCTGGTGCTTGGCAAGCTGGCGGaagg
gtga
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Coding sequence (CDS) from alignment at CM002463.1:1155349..1156252+

>rna4654 ID=rna4654|Name=rna4654|organism=Nannochloropsis gaditana|type=CDS|length=1056bp|location=Sequence derived from alignment at CM002463.1:1155349..1156252+ (Nannochloropsis gaditana)
ATGAATGCACCTCTTCATGACCACAGCGCTCTAACCCTGGCGGGAAGGGC
AGCACACTCAGCAGTCATTGTCACAGGGTCCAGGAACGAGCCCCCTTTCT
CGCCTCTCACGGGCAGTAGCAGTGCAACTTcgcaacctccccccctcccc
cgcccaagTCCTCAAAAAAAAAGCACTCCCACCGACAAACGAAAAATTGT
GACGAGTGTGGATAGCGTAGAGCCTCTTAGGAAAAAGACAATCGCTACAG
CTGGCGTCAAACGGGGCAGACACCCCTACGGTGTGCGGCCTCTGGGAAAT
TATTGGACGGAGGGGATGCCCGATGACATAGAGCGTCGGCAGAAGGGCTT
GGGTCTCCGTGCCTTTGCCACCCTGGCCGACGATGTTTTGGTCCActccg
tcctcttcgtcctcgacgcCGTCACCTTAAGTCGTCTCTCCCGGTGTTCC
CGCGCCTGGTACGTCTACAGCCACGCGTACACTGACGTGTGGAAGGCCCT
GGTGCTTGGCAAGCTGGCGGaagggtgaATGAATGCACCTCTTCATGACC
ACAGCGCTCTAACCCTGGCGGGAAGGGCAGCACACTCAGCAGTCATTGTC
ACAGGGTCCAGGAACGAGCCCCCTTTCTCGCCTCTCACGGGCAGTAGCAG
TGCAACTTcgcaacctccccccctcccccgcccaagTCCTCAAAAAAAAA
GCACTCCCACCGACAAACGAAAAATTGTGACGAGTGTGGATAGCGTAGAG
CCTCTTAGGAAAAAGACAATCGCTACAGCTGGCGTCAAACGGGGCAGACA
CCCCTACGGTGTGCGGCCTCTGGGAAATTATTGGACGGAGGGGATGCCCG
ATGACATAGAGCGTCGGCAGAAGGGCTTGGGTCTCCGTGCCTTTGCCACC
CTGGCCGACGATGTTTTGGTCCActccgtcctcttcgtcctcgacgcCGT
CACCTTAAGTCGTCTCTCCCGGTGTTCCCGCGCCTGGTACGTCTACAGCC
ACGCGTACACTGACGTGTGGAAGGCCCTGGTGCTTGGCAAGCTGGCGGaa
gggtga
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Synonyms
Publications