EWM26032.1, cds4642 (CDS) Nannochloropsis gaditana

Overview
NameEWM26032.1
Unique Namecds4642
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:1155421..1155744 +
Alignment locationCM002463.1:1156049..1156252 +

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Properties
Property NameValue
Protein idEWM26032.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101534g1.10612.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1155421..1155744 +
CM002463.1supercontigCM002463.1:1156049..1156252 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM26032.1 vs. NCBI_GenBank
Match: gi|585107951|gb|EWM26032.1| (hypothetical protein Naga_101534g1 [Nannochloropsis gaditana])

HSP 1 Score: 355.91 bits (912), Expect = 2.982e-124
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
Query:    1 MNAPLHDHSALTLAGRAAHSAVIVTGSRNEPPFSPLTGSSSATSQPPPLPRPSPQKKSTPTDKRKIVTSVDSVEPLRKKTIATAGVKRGRHPYGVRPLGNYWTEGMPDDIERRQKGLGLRAFATLADDVLVHSVLFVLDAVTLSRLSRCSRAWYVYSHAYTDVWKALVLGKLAEG 175
            MNAPLHDHSALTLAGRAAHSAVIVTGSRNEPPFSPLTGSSSATSQPPPLPRPSPQKKSTPTDKRKIVTSVDSVEPLRKKTIATAGVKRGRHPYGVRPLGNYWTEGMPDDIERRQKGLGLRAFATLADDVLVHSVLFVLDAVTLSRLSRCSRAWYVYSHAYTDVWKALVLGKLAEG
Sbjct:    1 MNAPLHDHSALTLAGRAAHSAVIVTGSRNEPPFSPLTGSSSATSQPPPLPRPSPQKKSTPTDKRKIVTSVDSVEPLRKKTIATAGVKRGRHPYGVRPLGNYWTEGMPDDIERRQKGLGLRAFATLADDVLVHSVLFVLDAVTLSRLSRCSRAWYVYSHAYTDVWKALVLGKLAEG 175          
BLAST of EWM26032.1 vs. NCBI_GenBank
Match: gi|553183153|ref|XP_005853849.1| (histone arginine, partial [Nannochloropsis gaditana CCMP526] >gi|422295212|gb|EKU22511.1| histone arginine, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 202.601 bits (514), Expect = 1.233e-64
Identity = 101/107 (94.39%), Postives = 101/107 (94.39%), Query Frame = 0
Query:   69 SVDSVEPLRKKTIATAGVKRGRHPYGVRPLGNYWTEGMPDDIERRQKGLGLRAFATLADDVLVHSVLFVLDAVTLSRLSRCSRAWYVYSHAYTDVWKALVLGKLAEG 175
            SVDSVEPLRKKTIATAGVKRGRHPYGVRPLGNYWTEGMPD      KGLGLRAFATLADDVLVHSVLFVLDAVTLSRLSRCSRAWYVYSHAYTDVWKALVLGKLAEG
Sbjct:    1 SVDSVEPLRKKTIATAGVKRGRHPYGVRPLGNYWTEGMPD------KGLGLRAFATLADDVLVHSVLFVLDAVTLSRLSRCSRAWYVYSHAYTDVWKALVLGKLAEG 101          
BLAST of EWM26032.1 vs. NCBI_GenBank
Match: gi|1214710976|gb|OWZ22020.1| (Histone arginine demethylase [Phytophthora megakarya])

HSP 1 Score: 58.9214 bits (141), Expect = 4.261e-7
Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = 0
Query:   87 KRGRHPYGVRPLGNYWTEGMPDDIERRQKGLGLRAFATLADDVLVHSVLFVLDAVTLSRLSRCSRAWYVYSHAYTDVWKALVLGKL 172
            +R  HP GV+P+GNY+ + +    E R  GLGL   A + D  L+ S+L    A  L+ L+ CSRA YVY   + ++W+ LVL ++
Sbjct:   41 RRLEHPLGVKPIGNYFEDAVKGVTECRASGLGL--LARMQDSQLL-SLLNYCSATDLANLASCSRAAYVYG-THDELWRVLVLEEM 122          
The following BLAST results are available for this feature:
BLAST of EWM26032.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585107951|gb|EWM26032.1|2.982e-124100.00hypothetical protein Naga_101534g1 [Nannochloropsi... [more]
gi|553183153|ref|XP_005853849.1|1.233e-6494.39histone arginine, partial [Nannochloropsis gaditan... [more]
gi|1214710976|gb|OWZ22020.1|4.261e-739.53Histone arginine demethylase [Phytophthora megakar... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4654rna4654Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications