rna4651, rna4651 (mRNA) Nannochloropsis gaditana

Overview
Namerna4651
Unique Namerna4651
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1680
Alignment locationCM002463.1:1149868..1150567 -

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Properties
Property NameValue
Producthect e3 ubiquitin
Orig transcript idgnl|cribi|Naga_102168g1.5678.mrna
Orig protein idgnl|cribi|Naga_102168g1.5678
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1149868..1150567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102168g1gene4488Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4651rna4651-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26034.1cds4639Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4651 ID=rna4651|Name=rna4651|organism=Nannochloropsis gaditana|type=mRNA|length=1680bp
TGAGCGCTTTTGGCAGAGCGCTATCTGCACTTTATACCTAGCTCCCCACT
CACGCCTCCCTCCCTCATCCTCTTCTACCTCCCCCCTTGATCGTGTGGCC
CCCGCTCGACCTACCCTTCTGCCCTGTAGGTGTGGCATCTTTTGCGTGGA
TTTTACGAGGTCGTGCCCGAGTCCCTGCTCTCCGTCTTCGACTACCAAGA
GCTCCAACTCCTCATGTCGGGGATGCCAGTCATCGACGTCCAGGACTGGA
AGCGGCACACGGAGTATTTAGGACGTTACCAGCGGCTGGGCGAGCGGCAC
AGGGTCATCAGATGGTTTTGGGAGGTGGTGGAGCACCGCCTCAACGAGGA
AAGTCGGGTCCGGCTCCTTCAGTTCATCACCGGGGGGTGCAGTGTCCCGG
CGCAGGGCTTCAAGGCACTCCAGTCCAATGACGGGAATTTCCGGCGCTTC
AACATCCAGAGTGTCTCGACTCAAGACTGCGTGTTCCCACGGGCGCATAC
ATGCTTCAACAAATTGGATCTTCCCCTATATAACTCGCTGGAGGAGCTGG
AGGGCTATCTGACGCTGGTAATCAACATAGAGATCACCGGATTTACCATC
GATTGAGACCTTGTAATATCTGAGATGGGTATGGTAACTTCCCTTCGCAA
TATTCGGCGGAGATGGGATGCATACAAAGAGGCACCAGAGAGAAAGAAAG
CAAGGAGTGCGGTCCTGCAATGTGCCAGCTCTTTTAGGTGCTGCGTCTCC
CTGCCTGAACACAACAAGGTAGCTTCTACGGCATGGACGCCTTTGCTTAC
ACGAGTGGCGGACACGAAAGAAATAAGCCCAAATTGGGGCCCGAAGGTTT
GGCAAAGTAAGACGCGAACGACTGAAAATGAGGAATCACAAAGAAGGAAG
AATGACTATTTAACGTCACGTCCCAAACTACCAAGGGCCTGAACCTTTTT
TGAAAAAGTCGCTGGTGTATCCTCAGAGATTTTTCCTGGCATGCCACGTC
AGAGATCATATTTCCTTCATTCTAGGCTCAAGGAAAGTTGACCTGTCCCT
CATGGTGTGTGTTGCCTTCCAAGAACAGCTCCACGTGTTCGGTCAACTCA
ATTAGCCTCCGGGGACTCGACCTGCGAAAGAGGAAAGAATAGACGCTGGC
AAGTCATGCCATGCAGTCATGTGACAAGCAGGAGGGTCTAGAGGTACTAG
GAGCACGGGGCCAAAAGCGGATTGGGATCAGGTCTTCCGCCAATGTCTCC
GCTCTTATATCATTATAAGGAAAGACGCATACTTGATAAGATGAGGCATT
GTGCAATTGCCTGAATGTCACTTTGAGAGCCCAGAAATGCACCAGGTATG
TATCCTCCTTGTCTGGAAGGTCGTAGATCTTCTGGCAAACCAATGCAAAA
GCAGACCAGATTCTTTACGTTGATATGCAAACCTTTTCAAAAGAAGCCCA
CAATACGATTGCTTCTCGACTCAATGTCCTTTGTTTAGTTTGTCTTCAAA
TGACATTTAAGTTATTGCTAGGATTTTGGCACGCATAGCTGGAGAGGTGA
GTGGGGCGCCACTTTTGAAGCCCACAAGGACATGAACGCCATTCACCGGT
AAAGAATAGCATTTAACGATATCTAGGCCCATACAGCATCACATAAGGCC
CTATTCGATACCTTTGTCCTATCCCAATCC
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protein sequence of rna4651

>rna4651-protein ID=rna4651-protein|Name=rna4651|organism=Nannochloropsis gaditana|type=polypeptide|length=109bp
MLWKRAVEEALSSFATLPSFLSSSLPHLFPPLPSPQAVLEHQTLPLALSL
PLLKHILGTPLTFSDLELLDPDLYRSLAYIQRCSPEEVEALHLDFTVTFE
AVGRQEVGP
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mRNA from alignment at CM002463.1:1149868..1150567-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4651 ID=rna4651|Name=rna4651|organism=Nannochloropsis gaditana|type=mRNA|length=700bp|location=Sequence derived from alignment at CM002463.1:1149868..1150567- (Nannochloropsis gaditana)
ATGCTCTGGAAGAGAGCAGTCGAGGAAGCCCTCTCTTCATTCGCTACCCT
CCCTTCCTTCCTTTCCTCCTCCCTCCCCCACCTCTTCCCCCCTTTGCCCT
CTCCACAGGCTGTCCTCGAGCATCAAACGCTTCCCCTCGCCCTCTCCCTC
CCCCTCCTTAAGCACATTCTCGGCACTCCCCTCACCTTCTCGGACCTGGA
GCTGCTCGACCCCGACCTCTACCGGTGCGTTTTGGTGAACCGGTCTGGCC
GTTACTCTGCCGGGGGTTACACTGATGGAGACGGCCTTCGATCCCAACGT
CTGTATCTTGTCTTCTGTCTTTTCCCTTGGACTTATAATATGAGGGCCAT
GTTCTAGATCCTTCCATGGCTGTACAGTCCGAGGGATGATTCTCAGCCGC
CGCGTCTCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGGCAG
TTCCCTTGCCTACATCCAGCGTTGCTCGCCCGAGGAGGTGGAGGCTCTCC
ACCTCGACTTTACCGTCACCTTCGAGGCTGTGGGCCGTCAAGAGGTAGGT
GGGACCTGTCGGCATCCTCCCTCCCTCACACTGACGCGTGTACATGCATC
GTGACACACGATGCAGTGGCACACCCTCCTTTTCTCCCTCCTTTTCTTTC
TTCCTCTCATCCCTCAACTCTTTCCTCGTACAACCTCCCCAGGTCCGTGA
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Coding sequence (CDS) from alignment at CM002463.1:1149868..1150567-

>rna4651 ID=rna4651|Name=rna4651|organism=Nannochloropsis gaditana|type=CDS|length=990bp|location=Sequence derived from alignment at CM002463.1:1149868..1150567- (Nannochloropsis gaditana)
GTCCGTGATTCCCTTGCCTACATCCAGCGTTGCTCGCCCGAGGAGGTGGA
GGCTCTCCACCTCGACTTTACCGTCACCTTCGAGGCTGTGGGCCGTCAAG
AGGTAGATGCTCTGGAAGAGAGCAGTCGAGGAAGCCCTCTCTTCATTCGC
TACCCTCCCTTCCTTCCTTTCCTCCTCCCTCCCCCACCTCTTCCCCCCTT
TGCCCTCTCCACAGGCTGTCCTCGAGCATCAAACGCTTCCCCTCGCCCTC
TCCCTCCCCCTCCTTAAGCACATTCTCGGCACTCCCCTCACCTTCTCGGA
CCTGGAGCTGCTCGACCCCGACCTCTACCGGTCCGTGATTCCCTTGCCTA
CATCCAGCGTTGCTCGCCCGAGGAGGTGGAGGCTCTCCACCTCGACTTTA
CCGTCACCTTCGAGGCTGTGGGCCGTCAAGAGGTAGATGCTCTGGAAGAG
AGCAGTCGAGGAAGCCCTCTCTTCATTCGCTACCCTCCCTTCCTTCCTTT
CCTCCTCCCTCCCCCACCTCTTCCCCCCTTTGCCCTCTCCACAGGCTGTC
CTCGAGCATCAAACGCTTCCCCTCGCCCTCTCCCTCCCCCTCCTTAAGCA
CATTCTCGGCACTCCCCTCACCTTCTCGGACCTGGAGCTGCTCGACCCCG
ACCTCTACCGGTCCGTGATTCCCTTGCCTACATCCAGCGTTGCTCGCCCG
AGGAGGTGGAGGCTCTCCACCTCGACTTTACCGTCACCTTCGAGGCTGTG
GGCCGTCAAGAGGTAGATGCTCTGGAAGAGAGCAGTCGAGGAAGCCCTCT
CTTCATTCGCTACCCTCCCTTCCTTCCTTTCCTCCTCCCTCCCCCACCTC
TTCCCCCCTTTGCCCTCTCCACAGGCTGTCCTCGAGCATCAAACGCTTCC
CCTCGCCCTCTCCCTCCCCCTCCTTAAGCACATTCTCGGCACTCCCCTCA
CCTTCTCGGACCTGGAGCTGCTCGACCCCGACCTCTACCG
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Synonyms
Publications