EWM26034.1, cds4639 (CDS) Nannochloropsis gaditana

Overview
NameEWM26034.1
Unique Namecds4639
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:1150344..1150567 -
Alignment locationCM002463.1:1150020..1150117 -
Alignment locationCM002463.1:1149868..1149875 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26034.1
Producthect e3 ubiquitin
Orig transcript idgnl|cribi|Naga_102168g1.5678.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1150344..1150567 -
CM002463.1supercontigCM002463.1:1150020..1150117 -
CM002463.1supercontigCM002463.1:1149868..1149875 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0016740transferase activity
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR000569HECT
Homology
[Close]
BLAST of EWM26034.1 vs. NCBI_GenBank
Match: gi|585107956|gb|EWM26034.1| (hect e3 ubiquitin [Nannochloropsis gaditana])

HSP 1 Score: 214.157 bits (544), Expect = 3.008e-70
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 
Query:    1 MLWKRAVEEALSSFATLPSFLSSSLPHLFPPLPSPQAVLEHQTLPLALSLPLLKHILGTPLTFSDLELLDPDLYRSLAYIQRCSPEEVEALHLDFTVTFEAVGRQEVGP 109
            MLWKRAVEEALSSFATLPSFLSSSLPHLFPPLPSPQAVLEHQTLPLALSLPLLKHILGTPLTFSDLELLDPDLYRSLAYIQRCSPEEVEALHLDFTVTFEAVGRQEVGP
Sbjct:    1 MLWKRAVEEALSSFATLPSFLSSSLPHLFPPLPSPQAVLEHQTLPLALSLPLLKHILGTPLTFSDLELLDPDLYRSLAYIQRCSPEEVEALHLDFTVTFEAVGRQEVGP 109
[Close]
BLAST of EWM26034.1 vs. NCBI_GenBank
Match: gi|698809778|ref|XP_009837918.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574107176|gb|ETV72690.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 79.7221 bits (195), Expect = 3.031e-15
Identity = 39/64 (60.94%), Postives = 52/64 (81.25%), Query Frame = 0 
Query:   36 QAVLEHQTLPLALSLPLLKHILGTPLTFSDLELLDPDLYRSLAYIQRC-SPEEVEALHLDFTVT 98
            +A+ E Q LP+ L+LPLLKHILG P++FSDL+ LD +LY+SL +++RC S  +VEAL LDFTVT
Sbjct:  353 KALFEEQLLPVHLTLPLLKHILGVPISFSDLQFLDDELYQSLVWLKRCTSAADVEALALDFTVT 416
[Close]
BLAST of EWM26034.1 vs. NCBI_GenBank
Match: gi|698809776|ref|XP_009837917.1| (hypothetical protein H257_12429 [Aphanomyces astaci] >gi|574107175|gb|ETV72689.1| hypothetical protein H257_12429 [Aphanomyces astaci])

HSP 1 Score: 79.7221 bits (195), Expect = 3.480e-15
Identity = 39/64 (60.94%), Postives = 52/64 (81.25%), Query Frame = 0 
Query:   36 QAVLEHQTLPLALSLPLLKHILGTPLTFSDLELLDPDLYRSLAYIQRC-SPEEVEALHLDFTVT 98
            +A+ E Q LP+ L+LPLLKHILG P++FSDL+ LD +LY+SL +++RC S  +VEAL LDFTVT
Sbjct:  353 KALFEEQLLPVHLTLPLLKHILGVPISFSDLQFLDDELYQSLVWLKRCTSAADVEALALDFTVT 416
[Close]
BLAST of EWM26034.1 vs. NCBI_GenBank
Match: gi|673028180|ref|XP_008868051.1| (hypothetical protein, variant 2 [Aphanomyces invadans] >gi|574476824|gb|ETW03822.1| hypothetical protein, variant 2 [Aphanomyces invadans])

HSP 1 Score: 76.6406 bits (187), Expect = 4.059e-14
Identity = 36/75 (48.00%), Postives = 57/75 (76.00%), Query Frame = 0 
Query:   36 QAVLEHQTLPLALSLPLLKHILGTPLTFSDLELLDPDLYRSLAYIQRCS-PEEVEALHLDFTVTFEAVGRQEVGP 109
            +A+ E Q +P+  ++PLLKH+LG P++FSDL+ LD +LY+SL ++++CS P++V+AL LDF+VT     RQ+  P
Sbjct:  339 KALFEEQLVPVHFTVPLLKHVLGVPISFSDLQFLDDELYQSLVWLKQCSNPDDVDALMLDFSVT-RTTQRQDGKP 412
[Close]
BLAST of EWM26034.1 vs. NCBI_GenBank
Match: gi|673028176|ref|XP_008868049.1| (hypothetical protein H310_05184 [Aphanomyces invadans] >gi|574476822|gb|ETW03820.1| hypothetical protein H310_05184 [Aphanomyces invadans])

HSP 1 Score: 76.6406 bits (187), Expect = 4.233e-14
Identity = 36/75 (48.00%), Postives = 57/75 (76.00%), Query Frame = 0 
Query:   36 QAVLEHQTLPLALSLPLLKHILGTPLTFSDLELLDPDLYRSLAYIQRCS-PEEVEALHLDFTVTFEAVGRQEVGP 109
            +A+ E Q +P+  ++PLLKH+LG P++FSDL+ LD +LY+SL ++++CS P++V+AL LDF+VT     RQ+  P
Sbjct:  358 KALFEEQLVPVHFTVPLLKHVLGVPISFSDLQFLDDELYQSLVWLKQCSNPDDVDALMLDFSVT-RTTQRQDGKP 431
[Close]
BLAST of EWM26034.1 vs. NCBI_GenBank
Match: gi|673028178|ref|XP_008868050.1| (hypothetical protein, variant 1 [Aphanomyces invadans] >gi|574476823|gb|ETW03821.1| hypothetical protein, variant 1 [Aphanomyces invadans])

HSP 1 Score: 76.6406 bits (187), Expect = 4.273e-14
Identity = 36/75 (48.00%), Postives = 57/75 (76.00%), Query Frame = 0 
Query:   36 QAVLEHQTLPLALSLPLLKHILGTPLTFSDLELLDPDLYRSLAYIQRCS-PEEVEALHLDFTVTFEAVGRQEVGP 109
            +A+ E Q +P+  ++PLLKH+LG P++FSDL+ LD +LY+SL ++++CS P++V+AL LDF+VT     RQ+  P
Sbjct:  358 KALFEEQLVPVHFTVPLLKHVLGVPISFSDLQFLDDELYQSLVWLKQCSNPDDVDALMLDFSVT-RTTQRQDGKP 431
[Close]
BLAST of EWM26034.1 vs. NCBI_GenBank
Match: gi|673028182|ref|XP_008868052.1| (hypothetical protein, variant 3 [Aphanomyces invadans] >gi|574476825|gb|ETW03823.1| hypothetical protein, variant 3 [Aphanomyces invadans])

HSP 1 Score: 76.6406 bits (187), Expect = 4.560e-14
Identity = 36/75 (48.00%), Postives = 57/75 (76.00%), Query Frame = 0 
Query:   36 QAVLEHQTLPLALSLPLLKHILGTPLTFSDLELLDPDLYRSLAYIQRCS-PEEVEALHLDFTVTFEAVGRQEVGP 109
            +A+ E Q +P+  ++PLLKH+LG P++FSDL+ LD +LY+SL ++++CS P++V+AL LDF+VT     RQ+  P
Sbjct:  339 KALFEEQLVPVHFTVPLLKHVLGVPISFSDLQFLDDELYQSLVWLKQCSNPDDVDALMLDFSVT-RTTQRQDGKP 412
[Close]
BLAST of EWM26034.1 vs. NCBI_GenBank
Match: gi|673028188|ref|XP_008868055.1| (hypothetical protein, variant 6 [Aphanomyces invadans] >gi|673028190|ref|XP_008868056.1| hypothetical protein, variant 7 [Aphanomyces invadans] >gi|574476828|gb|ETW03826.1| hypothetical protein, variant 6 [Aphanomyces invadans] >gi|574476829|gb|ETW03827.1| hypothetical protein, variant 7 [Aphanomyces invadans])

HSP 1 Score: 76.6406 bits (187), Expect = 4.748e-14
Identity = 36/75 (48.00%), Postives = 57/75 (76.00%), Query Frame = 0 
Query:   36 QAVLEHQTLPLALSLPLLKHILGTPLTFSDLELLDPDLYRSLAYIQRCS-PEEVEALHLDFTVTFEAVGRQEVGP 109
            +A+ E Q +P+  ++PLLKH+LG P++FSDL+ LD +LY+SL ++++CS P++V+AL LDF+VT     RQ+  P
Sbjct:  339 KALFEEQLVPVHFTVPLLKHVLGVPISFSDLQFLDDELYQSLVWLKQCSNPDDVDALMLDFSVT-RTTQRQDGKP 412
[Close]
BLAST of EWM26034.1 vs. NCBI_GenBank
Match: gi|673028184|ref|XP_008868053.1| (hypothetical protein, variant 4 [Aphanomyces invadans] >gi|673028186|ref|XP_008868054.1| hypothetical protein, variant 5 [Aphanomyces invadans] >gi|574476826|gb|ETW03824.1| hypothetical protein, variant 4 [Aphanomyces invadans] >gi|574476827|gb|ETW03825.1| hypothetical protein, variant 5 [Aphanomyces invadans])

HSP 1 Score: 76.2554 bits (186), Expect = 5.088e-14
Identity = 36/75 (48.00%), Postives = 57/75 (76.00%), Query Frame = 0 
Query:   36 QAVLEHQTLPLALSLPLLKHILGTPLTFSDLELLDPDLYRSLAYIQRCS-PEEVEALHLDFTVTFEAVGRQEVGP 109
            +A+ E Q +P+  ++PLLKH+LG P++FSDL+ LD +LY+SL ++++CS P++V+AL LDF+VT     RQ+  P
Sbjct:  358 KALFEEQLVPVHFTVPLLKHVLGVPISFSDLQFLDDELYQSLVWLKQCSNPDDVDALMLDFSVT-RTTQRQDGKP 431
[Close]
BLAST of EWM26034.1 vs. NCBI_GenBank
Match: gi|635359080|emb|CCI50663.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 72.7886 bits (177), Expect = 1.078e-12
Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 0 
Query:   29 FPPLPSPQAVLEHQTLPLALSLPLLKHILGTPLTFSDLELLDPDLYRSLAYIQRCSPEEVEALHLDFTVT 98
            F  +   +A++E Q LP+ L+LP LKHILG P++FSDL+ LD   +RS   IQ+   ++VE+L+LDFTVT
Sbjct:  424 FAGMLVGKAIMEEQVLPIHLALPFLKHILGIPISFSDLQFLDDQFHRSARMIQQ--TDDVESLYLDFTVT 491
The following BLAST results are available for this feature:
BLAST of EWM26034.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107956|gb|EWM26034.1|3.008e-70100.00hect e3 ubiquitin [Nannochloropsis gaditana][more]
gi|698809778|ref|XP_009837918.1|3.031e-1560.94hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|698809776|ref|XP_009837917.1|3.480e-1560.94hypothetical protein H257_12429 [Aphanomyces astac... [more]
gi|673028180|ref|XP_008868051.1|4.059e-1448.00hypothetical protein, variant 2 [Aphanomyces invad... [more]
gi|673028176|ref|XP_008868049.1|4.233e-1448.00hypothetical protein H310_05184 [Aphanomyces invad... [more]
gi|673028178|ref|XP_008868050.1|4.273e-1448.00hypothetical protein, variant 1 [Aphanomyces invad... [more]
gi|673028182|ref|XP_008868052.1|4.560e-1448.00hypothetical protein, variant 3 [Aphanomyces invad... [more]
gi|673028188|ref|XP_008868055.1|4.748e-1448.00hypothetical protein, variant 6 [Aphanomyces invad... [more]
gi|673028184|ref|XP_008868053.1|5.088e-1448.00hypothetical protein, variant 4 [Aphanomyces invad... [more]
gi|635359080|emb|CCI50663.1|1.078e-1250.00unnamed protein product [Albugo candida][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4651rna4651Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications