|
|
Properties
| Property Name | Value |
|---|
| Product | hect e3 ubiquitin |
| Orig transcript id | gnl|cribi|Naga_100526g3.5528.mrna |
| Orig protein id | gnl|cribi|Naga_100526g3.5528 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:1147197..1149608 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4650 ID=rna4650|Name=rna4650|organism=Nannochloropsis gaditana|type=mRNA|length=1720bp
CAGGGTACTCGAGCACATGAAGGGTAGTTTAATCCTAGGGGCTGTCAACC
TCATCTCGGTTTTTACCGTCCATACGGTCCAGGCGGCAACGTGTCCCTCC
GTAAGGCTCAATGTCAATGTGCCTTCGATCGTCAAACCCACACGGGCTTT
TCGCGCTAAGTTCAAGGTGACGAACACGAATAGAAATGTAGCCACGGGTC
TGGCACTCACAGTGACCCTTCCAATCGAGTTCACGCTGTTTAAAGCTAGT
CCCGCCCCTTCGAATACCCTTAATCCGTGGTCATTAGTCTATGGCGACAT
CACGTTGGGTCCGCTAAAAAGCATGCACGTAGTAGTGCGTGGTCTAGTAG
GAGAATGTTTCCAGGGAAGCATGACATTCAATGCGACAGTGGCAGTGCCA
GCGGATAATACATGTGCTCCTGTGACGGCGGCCCGTACGTTGTCAATCAA
AGACAGGACAGGAACCAAAAGACCTCCTTACTGCATGACCAACACCTCTC
AATTAAACGTGGACTGCGGTGTACCACTGCCCACTTTCTCTGTCGAACCA
TTTCCAGTGGGCACCTGTGGCAGCATCCCCGCCTCGGACCCTCGTGCCTT
TGGCCCCGACGCTTGGCAAATGCTCCATATATTCGCCCAAAACTACCCGG
AGGATCCCCAACCTCAGGTGGCGCAAGCCTGCGAGTCTTTTATTAATGCC
CTCCCCTACATGCTGCCCTGCGAGGTATGCGGCTACACCTTTGGCGAGTT
CATCCTGGCCAACATCGAGCACGCCGACACCTTCTCCCCCGCCTGCCAAG
CCAGTCAGGATCTCAACATGCCATGCCAAACCCCTGCGCAGGCCTGCGCC
ACGCAGAGCTCCCTCGTGAATTTTTTCCTCCGCGCTCACCACAGCGTCGA
TCAACGGACGCAGCCCTGCAAATCCTTGTGGACTCCGGCCATGGCCGCAG
AGGCTTATGCCTATCAACCCGATTTCTGCGCCACCTGCATCGTCTGGGGC
ACCGTCCCGCTTTGTAAATCCGTGGGCGAAACCGACTGCCAGGCCGTCAA
TACCACAGAGCCTTGTGGTACCGTGGCACCTTACCTGGCGCCGACCCCTG
CCCCCCTCACGGCAAGCCCCACACCTTCCTCTGAGTTGATAGTGGAGTGC
GGCATCGTCCTCCCGCCTTCGATCAGCGACTGGCCCATGGGGCAGTGCGG
AAATCGAACCACGGGCGATCCGCGTGTCTTTGGGCCCTACACCTGGCGCA
CCGTCCATCGTTTCGCGCAATTTTATCCGATCGACCCCACCACAGAGGTG
CAGGAGGCCTGCGTGAATTTCATCAACGCCCTGCCTTTCCTGCTCCCTTG
TCCGCATTGCGGCCATGACTTTGTGAACTTCATCGTCGCCAATTTGGAGA
ACGCCGGCACCTTCAACGCTGCTTGCGCCGCCAACGTCACCTATGGCATG
CCCTGTGAGAGCCTGGAGCAGGCCTGTGCGACCCGGCCCAACCTCGTCTC
CTTCTTCCTCCGGGCGCACCATAACGTGGACCGCAATAACAAGCCGTGTA
AGCCCCTCTGGTCCCGGGAGGAGGCTGTCGACGCGTTTGCGGTCATGACG
AATTTCTGCGCAACGGATGGGGTCTCGGCTGGGTATGAGCTTTGTCGCGG
GAAGGATGAGTCCGCCTGTGAGGAGCTGGCAACCACCCCTCCTTGCGGTT
ACCTCGTACCATTCCCGTGA back to topprotein sequence of rna4650 >rna4650-protein ID=rna4650-protein|Name=rna4650|organism=Nannochloropsis gaditana|type=polypeptide|length=130bp
MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVR
LLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNK
LDLPLYNSLEELEGYLTLVINIEITGFTID back to topmRNA from alignment at CM002463.1:1147197..1149608- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4650 ID=rna4650|Name=rna4650|organism=Nannochloropsis gaditana|type=mRNA|length=2412bp|location=Sequence derived from alignment at CM002463.1:1147197..1149608- (Nannochloropsis gaditana)
TGAGCGCTTTTGGCAGAGCGCTATCTGCACTTTATACCTAGCTCCCCACT
CACGCCTCCCTCCCTCATCCTCTTCTACCTCCCCCCTTGATCGTGTGGCC
CCCGCTCGACCTACCCTTCTGCCCTGTAGGTGTGGCATCTTTTGCGTGGA
TTTTACGAGGTCGTGCCCGAGTCCCTGCTCTCCGTCTTCGACTACCAAGA
GCTCCAACTCCTCATGTCGGGGATGCCAGGTCAGGAGGGAGGGAACGAGG
GATGGGAGGAAAGAAGGGAAGGGAGGAAACGAGTAGAAAGGGGAAATGAG
GGAAGGGAGGAACCAAGGGGGGGGGGGAAAGCGCGGGGCCGTGGGTGGTG
TCAAGACAGTGGTTGTCCTCTTCATGTGTGTCAACACAACCCGCAGTCAT
CGACGTCCAGGACTGGAAGCGGCACACGGAGTATTTAGGACGTTACCAGC
GGCTGGGCGAGCGGCACAGGGTCATCAGGTGCGATATGAGAACCTTTCTT
CCTCCCCACATTGTCTTTGGGGAATGTACCTTGATTCCGCCCACCACCTG
CGTGCATGTACGGGTCTCGGTCCCTAGATTCTCATCCGTTCGTGAAATGC
GCCACGTCTTTGCCTCTCAGATGGTTTTGGGAGGTGGTGGAGCACCGCCT
CAACGAGGAAAGTCGGGTCCGGCTCCTTCAGTTCATCACCGGGGGGTGCA
GTGTCCCGGCGCAGGGCTTCAAGGTAAGGCCGTCGGAATGCTCTCCATAC
GAGGCATGGACCACCCCACCCTTTCCCTCCCTTTCCTCGCCCTTCCCTCC
TGACTGACTTGCCCCATTGTCTCTTCGCTCTTCCTACGTCCTGTCTACAA
CCAGGCACTCCAGTCCAATGACGGGAATTTCCGGCGCTTCAACATCCAGA
GTGTCTCGACTCAAGACTGCGTGTTCCCACGGGCGCATACATGCTTCAAC
AAGTACGTATGGAGGGGTAGAGGGGAATAAGGAGGGGAGGACGAATAGGT
ACATGAATGATATCAACCACTCAGGCTTCCGCGCACCTTTACAAACAAAT
TTGGTAACAGTACATGTCATGTGCATATCATGTATTTGCCGCTGCTCTTC
CATTGACACGTCCTTTGAGCTGTCGAACTTGTCTCAGATTCACTTTATTC
ATAAATTTGTATCAACTATCTCATCAAGTGACTTCTCATATGGAGCGGTC
TCACTCATCCTTCGACACAAACGCCCATATCATGACCTCTGCAGATTGGA
TCTTCCCCTATATAACTCGCTGGAGGAGCTGGAGGGCTATCTGACGCTGG
TAATCAACATAGAGATCACCGGATTTACCATCGATTGAGACCTTGTAATA
TCTGAGATGGGTATGGTAACTTCCCTTCGCAATATTCGGCGGAGATGGGA
TGCATACAAAGAGGCACCAGAGAGAAAGAAAGCAAGGAGTGCGGTCCTGC
AATGTGCCAGCTCTTTTAGGTGCTGCGTCTCCCTGCCTGAACACAACAAG
GTAGCTTCTACGGCATGGACGCCTTTGCTTACACGAGTGGCGGACACGAA
AGAAATAAGCCCAAATTGGGGCCCGAAGGTTTGGCAAAGTAAGACGCGAA
CGACTGAAAATGAGGAATCACAAAGAAGGAAGAATGACTATTTAACGTCA
CGTCCCAAACTACCAAGGGCCTGAACCTTTTTTGAAAAAGTCGCTGGTGT
ATCCTCAGAGATTTTTCCTGGCATGCCACGTCAGAGATCATATTTCCTTC
ATTCTAGGCTCAAGGAAAGTTGACCTGTCCCTCATGGTGTGTGTTGCCTT
CCAAGAACAGCTCCACGTGTTCGGTCAACTCAATTAGCCTCCGGGGACTC
GACCTGCGAAAGAGGAAAGAATAGACGCTGGCAAGTCATGCCATGCAGTC
ATGTGACAAGCAGGAGGGTCTAGAGGTACTAGGAGCACGGGGCCAAAAGC
GGATTGGGATCAGGTCTTCCGCCAATGTCTCCGCTCTTATATCATTATAA
GGAAAGACGCATACTTGATAAGATGAGGCATTGTGCAATTGCCTGAATGT
CACTTTGAGAGCCCAGAAATGCACCAGGTATGTATCCTCCTTGTCTGGAA
GGTCGTAGATCTTCTGGCAAACCAATGCAAAAGCAGACCAGATTCTTTAC
GTTGATATGCAAACCTTTTCAAAAGAAGCCCACAATACGATTGCTTCTCG
ACTCAATGTCCTTTGTTTAGTTTGTCTTCAAATGACATTTAAGTTATTGC
TAGGATTTTGGCACGCATAGCTGGAGAGGTGAGTGGGGCGCCACTTTTGA
AGCCCACAAGGACATGAACGCCATTCACCGGTAAAGAATAGCATTTAACG
ATATCTAGGCCCATACAGCATCACATAAGGCCCTATTCGATACCTTTGTC
CTATCCCAATCC back to topCoding sequence (CDS) from alignment at CM002463.1:1147197..1149608- >rna4650 ID=rna4650|Name=rna4650|organism=Nannochloropsis gaditana|type=CDS|length=1965bp|location=Sequence derived from alignment at CM002463.1:1147197..1149608- (Nannochloropsis gaditana)
ATTGGATCTTCCCCTATATAACTCGCTGGAGGAGCTGGAGGGCTATCTGA
CGCTGGTAATCAACATAGAGATCACCGGATTTACCATCGATTGAGCACTC
CAGTCCAATGACGGGAATTTCCGGCGCTTCAACATCCAGAGTGTCTCGAC
TCAAGACTGCGTGTTCCCACGGGCGCATACATGCTTCAACAAATGGTTTT
GGGAGGTGGTGGAGCACCGCCTCAACGAGGAAAGTCGGGTCCGGCTCCTT
CAGTTCATCACCGGGGGGTGCAGTGTCCCGGCGCAGGGCTTCAAGTCATC
GACGTCCAGGACTGGAAGCGGCACACGGAGTATTTAGGACGTTACCAGCG
GCTGGGCGAGCGGCACAGGGTCATCAGATGTCGGGGATGCCAGATTGGAT
CTTCCCCTATATAACTCGCTGGAGGAGCTGGAGGGCTATCTGACGCTGGT
AATCAACATAGAGATCACCGGATTTACCATCGATTGAGCACTCCAGTCCA
ATGACGGGAATTTCCGGCGCTTCAACATCCAGAGTGTCTCGACTCAAGAC
TGCGTGTTCCCACGGGCGCATACATGCTTCAACAAATGGTTTTGGGAGGT
GGTGGAGCACCGCCTCAACGAGGAAAGTCGGGTCCGGCTCCTTCAGTTCA
TCACCGGGGGGTGCAGTGTCCCGGCGCAGGGCTTCAAGTCATCGACGTCC
AGGACTGGAAGCGGCACACGGAGTATTTAGGACGTTACCAGCGGCTGGGC
GAGCGGCACAGGGTCATCAGATGTCGGGGATGCCAGATTGGATCTTCCCC
TATATAACTCGCTGGAGGAGCTGGAGGGCTATCTGACGCTGGTAATCAAC
ATAGAGATCACCGGATTTACCATCGATTGAGCACTCCAGTCCAATGACGG
GAATTTCCGGCGCTTCAACATCCAGAGTGTCTCGACTCAAGACTGCGTGT
TCCCACGGGCGCATACATGCTTCAACAAATGGTTTTGGGAGGTGGTGGAG
CACCGCCTCAACGAGGAAAGTCGGGTCCGGCTCCTTCAGTTCATCACCGG
GGGGTGCAGTGTCCCGGCGCAGGGCTTCAAGTCATCGACGTCCAGGACTG
GAAGCGGCACACGGAGTATTTAGGACGTTACCAGCGGCTGGGCGAGCGGC
ACAGGGTCATCAGATGTCGGGGATGCCAGATTGGATCTTCCCCTATATAA
CTCGCTGGAGGAGCTGGAGGGCTATCTGACGCTGGTAATCAACATAGAGA
TCACCGGATTTACCATCGATTGAGCACTCCAGTCCAATGACGGGAATTTC
CGGCGCTTCAACATCCAGAGTGTCTCGACTCAAGACTGCGTGTTCCCACG
GGCGCATACATGCTTCAACAAATGGTTTTGGGAGGTGGTGGAGCACCGCC
TCAACGAGGAAAGTCGGGTCCGGCTCCTTCAGTTCATCACCGGGGGGTGC
AGTGTCCCGGCGCAGGGCTTCAAGTCATCGACGTCCAGGACTGGAAGCGG
CACACGGAGTATTTAGGACGTTACCAGCGGCTGGGCGAGCGGCACAGGGT
CATCAGATGTCGGGGATGCCAGATTGGATCTTCCCCTATATAACTCGCTG
GAGGAGCTGGAGGGCTATCTGACGCTGGTAATCAACATAGAGATCACCGG
ATTTACCATCGATTGAGCACTCCAGTCCAATGACGGGAATTTCCGGCGCT
TCAACATCCAGAGTGTCTCGACTCAAGACTGCGTGTTCCCACGGGCGCAT
ACATGCTTCAACAAATGGTTTTGGGAGGTGGTGGAGCACCGCCTCAACGA
GGAAAGTCGGGTCCGGCTCCTTCAGTTCATCACCGGGGGGTGCAGTGTCC
CGGCGCAGGGCTTCAAGTCATCGACGTCCAGGACTGGAAGCGGCACACGG
AGTATTTAGGACGTTACCAGCGGCTGGGCGAGCGGCACAGGGTCATCAGA
TGTCGGGGATGCCAG back to top
|