EWM26036.1, cds4638 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26036.1 vs. NCBI_GenBank
Match: gi|585107959|gb|EWM26036.1| (hect e3 ubiquitin [Nannochloropsis gaditana]) HSP 1 Score: 272.707 bits (696), Expect = 7.355e-93 Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 Query: 1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID Sbjct: 1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130
BLAST of EWM26036.1 vs. NCBI_GenBank
Match: gi|676395953|ref|XP_009041254.1| (hypothetical protein AURANDRAFT_55365 [Aureococcus anophagefferens] >gi|323448073|gb|EGB03976.1| hypothetical protein AURANDRAFT_55365 [Aureococcus anophagefferens]) HSP 1 Score: 172.555 bits (436), Expect = 8.148e-49 Identity = 73/130 (56.15%), Postives = 98/130 (75.38%), Query Frame = 0 Query: 1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130 + G+P ID++DWKR+TEY G Y+R G H+V++WFWEVV +EE + RLLQF+TG VPAQGF+ALQ ND N R+F I S+ VFP+AHTCFN++DLPLY+S ++L+ +LT+ I +E TGF ID Sbjct: 389 LCGLPEIDIEDWKRNTEYTGDYERKGASHKVVKWFWEVVVDDFDEEHKARLLQFVTGTSGVPAQGFRALQGNDNNIRKFTINSIPETVSVFPKAHTCFNRIDLPLYDSKKKLKKFLTMAIQMEATGFDID 518
BLAST of EWM26036.1 vs. NCBI_GenBank
Match: gi|298708465|emb|CBJ30589.1| (HECT E3 ubiquitin ligase, putative [Ectocarpus siliculosus]) HSP 1 Score: 176.407 bits (446), Expect = 1.213e-48 Identity = 80/130 (61.54%), Postives = 98/130 (75.38%), Query Frame = 0 Query: 1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130 + G+P IDV +WKR + YLG Y+R GE H VI+WFWEVVE +E+ + RLLQF TG +PA GFKALQSNDG+FR F++QS++ +D FPRAHTCFNKLDLP Y S +ELE L L I E+TGFTID Sbjct: 1059 LCGIPEIDVSEWKRCSRYLGDYRRAGENHVVIKWFWEVVE-AFSEDEKARLLQFCTGSSRLPAHGFKALQSNDGSFRAFSLQSITKRDSAFPRAHTCFNKLDLPTYESKKELEECLGLCICFELTGFTID 1187
BLAST of EWM26036.1 vs. NCBI_GenBank
Match: gi|676393179|ref|XP_009039867.1| (hypothetical protein AURANDRAFT_38473 [Aureococcus anophagefferens] >gi|323449598|gb|EGB05485.1| hypothetical protein AURANDRAFT_38473 [Aureococcus anophagefferens]) HSP 1 Score: 172.94 bits (437), Expect = 7.780e-48 Identity = 73/130 (56.15%), Postives = 98/130 (75.38%), Query Frame = 0 Query: 1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130 + G+P ID++DWKR+TEY G Y+R G H+V++WFWEVV +EE + RLLQF+TG VPAQGF+ALQ ND N R+F I S+ VFP+AHTCFN++DLPLY+S ++L+ +LT+ I +E TGF ID Sbjct: 618 LCGLPEIDIEDWKRNTEYTGDYERKGSSHKVVKWFWEVVVDDFDEEHKARLLQFVTGTSGVPAQGFRALQGNDNNIRKFTINSIPETVSVFPKAHTCFNRIDLPLYDSKKKLKKFLTMAIQMEATGFDID 747
BLAST of EWM26036.1 vs. NCBI_GenBank
Match: gi|676391743|ref|XP_009039149.1| (hypothetical protein AURANDRAFT_29553, partial [Aureococcus anophagefferens] >gi|323450319|gb|EGB06201.1| hypothetical protein AURANDRAFT_29553, partial [Aureococcus anophagefferens]) HSP 1 Score: 160.229 bits (404), Expect = 1.084e-45 Identity = 72/130 (55.38%), Postives = 93/130 (71.54%), Query Frame = 0 Query: 1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130 M G P IDV DW +HTEY G Y+R G+RH VI WFW+ V +L++ R +LLQF TG VP GF+ALQ NDG ++RF IQS+ + FPRAHTCFN++DLPLY+S ELE L ++I ++ TGFT+D Sbjct: 219 MCGSPTIDVADWAKHTEYAGEYRRRGDRHAVIAWFWKAVA-KLDDADRSKLLQFCTGSSRVPCHGFRALQRNDGKYQRFCIQSLPRNELRFPRAHTCFNRIDLPLYSSYAELEAGLKVLIAMDATGFTMD 347
BLAST of EWM26036.1 vs. NCBI_GenBank
Match: gi|585111208|gb|EWM28785.1| (hect e3 ubiquitin [Nannochloropsis gaditana]) HSP 1 Score: 162.925 bits (411), Expect = 3.037e-44 Identity = 71/130 (54.62%), Postives = 96/130 (73.85%), Query Frame = 0 Query: 1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130 + GMP +D++DW R+T Y G + RLG +HRV++WFWEVV + ++E R RLLQF TG VPAQGF LQ NDGN R+F I S+S VFPRAHTCFN++DLPLY + ++L+ L+L I +E +GF+I+ Sbjct: 625 LCGMPNLDIEDWLRNTGYGGEFARLGAQHRVVQWFWEVVRNDFDQEQRARLLQFTTGTSGVPAQGFAFLQGNDGNIRKFTINSISLDQSVFPRAHTCFNRIDLPLYKTKKDLKERLSLAIQMESSGFSIE 754
BLAST of EWM26036.1 vs. NCBI_GenBank
Match: gi|224008951|ref|XP_002293434.1| (ubiquitin protein ligase [Thalassiosira pseudonana CCMP1335] >gi|220970834|gb|EED89170.1| ubiquitin protein ligase [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 154.451 bits (389), Expect = 2.407e-43 Identity = 69/130 (53.08%), Postives = 90/130 (69.23%), Query Frame = 0 Query: 1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130 M G+P ID+QDW+ +TEY G Y R G H V RWFWE+V + E R RL+QF+TG VPA+GF +LQ NDGN R+F I VS + CV+PR+HTCFN++DLPLY ++LE L + I + TGF I+ Sbjct: 219 MCGLPEIDMQDWQDNTEYSGEYDRDGPNHEVCRWFWEIVS-EYDHEMRARLMQFVTGTSGVPARGFGSLQGNDGNVRKFTIHGVSLETCVYPRSHTCFNRIDLPLYEDRDDLEEKLKIAITMASTGFDIE 347
BLAST of EWM26036.1 vs. NCBI_GenBank
Match: gi|1072223598|gb|OEU08353.1| (HECT-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 152.14 bits (383), Expect = 4.783e-42 Identity = 68/130 (52.31%), Postives = 88/130 (67.69%), Query Frame = 0 Query: 1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130 M G+P ID++DWK HTEY G Y+ +G H + WFWE +E E R RLL F+TG VP++GF LQSNDGN R F I VS + C +PRAHTCFN++DLPLY+S E+L+ L L + + TGF I+ Sbjct: 265 MCGLPHIDLEDWKAHTEYSGEYEEIGIHHPTVEWFWETLE-EFTAELRARLLLFVTGTSGVPSRGFGVLQSNDGNIRNFTIHGVSAEICFYPRAHTCFNRIDLPLYDSKEKLKERLKLAVTMSATGFDIE 393
BLAST of EWM26036.1 vs. NCBI_GenBank
Match: gi|397640480|gb|EJK74143.1| (hypothetical protein THAOC_04195, partial [Thalassiosira oceanica]) HSP 1 Score: 155.221 bits (391), Expect = 1.078e-41 Identity = 68/130 (52.31%), Postives = 92/130 (70.77%), Query Frame = 0 Query: 1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130 M G+P ID+ +WK +TEY G Y R G H+V WFWE+V ++E + RLLQF+TG VPA+GF +LQ NDGN RRF I V+ + CV+PR+HTCFN++DLP+Y+S +ELE L + I + TGF I+ Sbjct: 520 MCGLPEIDMDNWKENTEYSGDYDREGPNHKVCGWFWEIVSE-YDQELKARLLQFVTGTSGVPAKGFSSLQGNDGNVRRFTIHGVALETCVYPRSHTCFNRIDLPIYDSKDELEEKLKIAITMAATGFDIE 648
BLAST of EWM26036.1 vs. NCBI_GenBank
Match: gi|397611542|gb|EJK61369.1| (hypothetical protein THAOC_18147 [Thalassiosira oceanica]) HSP 1 Score: 150.214 bits (378), Expect = 1.802e-39 Identity = 67/130 (51.54%), Postives = 90/130 (69.23%), Query Frame = 0 Query: 1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130 M G+P ID+ +WK +TEY G Y R G H V WFWEVV ++E + RLLQF+TG VPA GF +LQ N+G+ RRF I V+ + CV+PR+HTCFN++DLP+Y+S +ELE L + I + TGF I+ Sbjct: 881 MCGLPEIDMDNWKENTEYSGDYDREGPNHEVCGWFWEVVSE-YDQELKARLLQFVTGTSGVPANGFGSLQGNNGDVRRFTIHGVALETCVYPRSHTCFNRIDLPIYDSKDELEEKLKIAITMAATGFDIE 1009 The following BLAST results are available for this feature:
BLAST of EWM26036.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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