EWM26036.1, cds4638 (CDS) Nannochloropsis gaditana

Overview
NameEWM26036.1
Unique Namecds4638
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:1149380..1149395 -
Alignment locationCM002463.1:1149131..1149212 -
Alignment locationCM002463.1:1148886..1148988 -
Alignment locationCM002463.1:1148657..1148754 -
Alignment locationCM002463.1:1148271..1148364 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26036.1
Producthect e3 ubiquitin
Orig transcript idgnl|cribi|Naga_100526g3.5528.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1149380..1149395 -
CM002463.1supercontigCM002463.1:1149131..1149212 -
CM002463.1supercontigCM002463.1:1148886..1148988 -
CM002463.1supercontigCM002463.1:1148657..1148754 -
CM002463.1supercontigCM002463.1:1148271..1148364 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0009056catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR000569HECT
Homology
BLAST of EWM26036.1 vs. NCBI_GenBank
Match: gi|585107959|gb|EWM26036.1| (hect e3 ubiquitin [Nannochloropsis gaditana])

HSP 1 Score: 272.707 bits (696), Expect = 7.355e-93
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0
Query:    1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130
            MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID
Sbjct:    1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130          
BLAST of EWM26036.1 vs. NCBI_GenBank
Match: gi|676395953|ref|XP_009041254.1| (hypothetical protein AURANDRAFT_55365 [Aureococcus anophagefferens] >gi|323448073|gb|EGB03976.1| hypothetical protein AURANDRAFT_55365 [Aureococcus anophagefferens])

HSP 1 Score: 172.555 bits (436), Expect = 8.148e-49
Identity = 73/130 (56.15%), Postives = 98/130 (75.38%), Query Frame = 0
Query:    1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130
            + G+P ID++DWKR+TEY G Y+R G  H+V++WFWEVV    +EE + RLLQF+TG   VPAQGF+ALQ ND N R+F I S+     VFP+AHTCFN++DLPLY+S ++L+ +LT+ I +E TGF ID
Sbjct:  389 LCGLPEIDIEDWKRNTEYTGDYERKGASHKVVKWFWEVVVDDFDEEHKARLLQFVTGTSGVPAQGFRALQGNDNNIRKFTINSIPETVSVFPKAHTCFNRIDLPLYDSKKKLKKFLTMAIQMEATGFDID 518          
BLAST of EWM26036.1 vs. NCBI_GenBank
Match: gi|298708465|emb|CBJ30589.1| (HECT E3 ubiquitin ligase, putative [Ectocarpus siliculosus])

HSP 1 Score: 176.407 bits (446), Expect = 1.213e-48
Identity = 80/130 (61.54%), Postives = 98/130 (75.38%), Query Frame = 0
Query:    1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130
            + G+P IDV +WKR + YLG Y+R GE H VI+WFWEVVE   +E+ + RLLQF TG   +PA GFKALQSNDG+FR F++QS++ +D  FPRAHTCFNKLDLP Y S +ELE  L L I  E+TGFTID
Sbjct: 1059 LCGIPEIDVSEWKRCSRYLGDYRRAGENHVVIKWFWEVVE-AFSEDEKARLLQFCTGSSRLPAHGFKALQSNDGSFRAFSLQSITKRDSAFPRAHTCFNKLDLPTYESKKELEECLGLCICFELTGFTID 1187          
BLAST of EWM26036.1 vs. NCBI_GenBank
Match: gi|676393179|ref|XP_009039867.1| (hypothetical protein AURANDRAFT_38473 [Aureococcus anophagefferens] >gi|323449598|gb|EGB05485.1| hypothetical protein AURANDRAFT_38473 [Aureococcus anophagefferens])

HSP 1 Score: 172.94 bits (437), Expect = 7.780e-48
Identity = 73/130 (56.15%), Postives = 98/130 (75.38%), Query Frame = 0
Query:    1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130
            + G+P ID++DWKR+TEY G Y+R G  H+V++WFWEVV    +EE + RLLQF+TG   VPAQGF+ALQ ND N R+F I S+     VFP+AHTCFN++DLPLY+S ++L+ +LT+ I +E TGF ID
Sbjct:  618 LCGLPEIDIEDWKRNTEYTGDYERKGSSHKVVKWFWEVVVDDFDEEHKARLLQFVTGTSGVPAQGFRALQGNDNNIRKFTINSIPETVSVFPKAHTCFNRIDLPLYDSKKKLKKFLTMAIQMEATGFDID 747          
BLAST of EWM26036.1 vs. NCBI_GenBank
Match: gi|676391743|ref|XP_009039149.1| (hypothetical protein AURANDRAFT_29553, partial [Aureococcus anophagefferens] >gi|323450319|gb|EGB06201.1| hypothetical protein AURANDRAFT_29553, partial [Aureococcus anophagefferens])

HSP 1 Score: 160.229 bits (404), Expect = 1.084e-45
Identity = 72/130 (55.38%), Postives = 93/130 (71.54%), Query Frame = 0
Query:    1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130
            M G P IDV DW +HTEY G Y+R G+RH VI WFW+ V  +L++  R +LLQF TG   VP  GF+ALQ NDG ++RF IQS+   +  FPRAHTCFN++DLPLY+S  ELE  L ++I ++ TGFT+D
Sbjct:  219 MCGSPTIDVADWAKHTEYAGEYRRRGDRHAVIAWFWKAVA-KLDDADRSKLLQFCTGSSRVPCHGFRALQRNDGKYQRFCIQSLPRNELRFPRAHTCFNRIDLPLYSSYAELEAGLKVLIAMDATGFTMD 347          
BLAST of EWM26036.1 vs. NCBI_GenBank
Match: gi|585111208|gb|EWM28785.1| (hect e3 ubiquitin [Nannochloropsis gaditana])

HSP 1 Score: 162.925 bits (411), Expect = 3.037e-44
Identity = 71/130 (54.62%), Postives = 96/130 (73.85%), Query Frame = 0
Query:    1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130
            + GMP +D++DW R+T Y G + RLG +HRV++WFWEVV +  ++E R RLLQF TG   VPAQGF  LQ NDGN R+F I S+S    VFPRAHTCFN++DLPLY + ++L+  L+L I +E +GF+I+
Sbjct:  625 LCGMPNLDIEDWLRNTGYGGEFARLGAQHRVVQWFWEVVRNDFDQEQRARLLQFTTGTSGVPAQGFAFLQGNDGNIRKFTINSISLDQSVFPRAHTCFNRIDLPLYKTKKDLKERLSLAIQMESSGFSIE 754          
BLAST of EWM26036.1 vs. NCBI_GenBank
Match: gi|224008951|ref|XP_002293434.1| (ubiquitin protein ligase [Thalassiosira pseudonana CCMP1335] >gi|220970834|gb|EED89170.1| ubiquitin protein ligase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 154.451 bits (389), Expect = 2.407e-43
Identity = 69/130 (53.08%), Postives = 90/130 (69.23%), Query Frame = 0
Query:    1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130
            M G+P ID+QDW+ +TEY G Y R G  H V RWFWE+V    + E R RL+QF+TG   VPA+GF +LQ NDGN R+F I  VS + CV+PR+HTCFN++DLPLY   ++LE  L + I +  TGF I+
Sbjct:  219 MCGLPEIDMQDWQDNTEYSGEYDRDGPNHEVCRWFWEIVS-EYDHEMRARLMQFVTGTSGVPARGFGSLQGNDGNVRKFTIHGVSLETCVYPRSHTCFNRIDLPLYEDRDDLEEKLKIAITMASTGFDIE 347          
BLAST of EWM26036.1 vs. NCBI_GenBank
Match: gi|1072223598|gb|OEU08353.1| (HECT-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 152.14 bits (383), Expect = 4.783e-42
Identity = 68/130 (52.31%), Postives = 88/130 (67.69%), Query Frame = 0
Query:    1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130
            M G+P ID++DWK HTEY G Y+ +G  H  + WFWE +E     E R RLL F+TG   VP++GF  LQSNDGN R F I  VS + C +PRAHTCFN++DLPLY+S E+L+  L L + +  TGF I+
Sbjct:  265 MCGLPHIDLEDWKAHTEYSGEYEEIGIHHPTVEWFWETLE-EFTAELRARLLLFVTGTSGVPSRGFGVLQSNDGNIRNFTIHGVSAEICFYPRAHTCFNRIDLPLYDSKEKLKERLKLAVTMSATGFDIE 393          
BLAST of EWM26036.1 vs. NCBI_GenBank
Match: gi|397640480|gb|EJK74143.1| (hypothetical protein THAOC_04195, partial [Thalassiosira oceanica])

HSP 1 Score: 155.221 bits (391), Expect = 1.078e-41
Identity = 68/130 (52.31%), Postives = 92/130 (70.77%), Query Frame = 0
Query:    1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130
            M G+P ID+ +WK +TEY G Y R G  H+V  WFWE+V    ++E + RLLQF+TG   VPA+GF +LQ NDGN RRF I  V+ + CV+PR+HTCFN++DLP+Y+S +ELE  L + I +  TGF I+
Sbjct:  520 MCGLPEIDMDNWKENTEYSGDYDREGPNHKVCGWFWEIVSE-YDQELKARLLQFVTGTSGVPAKGFSSLQGNDGNVRRFTIHGVALETCVYPRSHTCFNRIDLPIYDSKDELEEKLKIAITMAATGFDIE 648          
BLAST of EWM26036.1 vs. NCBI_GenBank
Match: gi|397611542|gb|EJK61369.1| (hypothetical protein THAOC_18147 [Thalassiosira oceanica])

HSP 1 Score: 150.214 bits (378), Expect = 1.802e-39
Identity = 67/130 (51.54%), Postives = 90/130 (69.23%), Query Frame = 0
Query:    1 MSGMPVIDVQDWKRHTEYLGRYQRLGERHRVIRWFWEVVEHRLNEESRVRLLQFITGGCSVPAQGFKALQSNDGNFRRFNIQSVSTQDCVFPRAHTCFNKLDLPLYNSLEELEGYLTLVINIEITGFTID 130
            M G+P ID+ +WK +TEY G Y R G  H V  WFWEVV    ++E + RLLQF+TG   VPA GF +LQ N+G+ RRF I  V+ + CV+PR+HTCFN++DLP+Y+S +ELE  L + I +  TGF I+
Sbjct:  881 MCGLPEIDMDNWKENTEYSGDYDREGPNHEVCGWFWEVVSE-YDQELKARLLQFVTGTSGVPANGFGSLQGNNGDVRRFTIHGVALETCVYPRSHTCFNRIDLPIYDSKDELEEKLKIAITMAATGFDIE 1009          
The following BLAST results are available for this feature:
BLAST of EWM26036.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107959|gb|EWM26036.1|7.355e-93100.00hect e3 ubiquitin [Nannochloropsis gaditana][more]
gi|676395953|ref|XP_009041254.1|8.148e-4956.15hypothetical protein AURANDRAFT_55365 [Aureococcus... [more]
gi|298708465|emb|CBJ30589.1|1.213e-4861.54HECT E3 ubiquitin ligase, putative [Ectocarpus sil... [more]
gi|676393179|ref|XP_009039867.1|7.780e-4856.15hypothetical protein AURANDRAFT_38473 [Aureococcus... [more]
gi|676391743|ref|XP_009039149.1|1.084e-4555.38hypothetical protein AURANDRAFT_29553, partial [Au... [more]
gi|585111208|gb|EWM28785.1|3.037e-4454.62hect e3 ubiquitin [Nannochloropsis gaditana][more]
gi|224008951|ref|XP_002293434.1|2.407e-4353.08ubiquitin protein ligase [Thalassiosira pseudonana... [more]
gi|1072223598|gb|OEU08353.1|4.783e-4252.31HECT-domain-containing protein [Fragilariopsis cyl... [more]
gi|397640480|gb|EJK74143.1|1.078e-4152.31hypothetical protein THAOC_04195, partial [Thalass... [more]
gi|397611542|gb|EJK61369.1|1.802e-3951.54hypothetical protein THAOC_18147 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4650rna4650Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications