rna4648, rna4648 (mRNA) Nannochloropsis gaditana

Overview
Namerna4648
Unique Namerna4648
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length411
Alignment locationCM002463.1:1139105..1139390 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101726g2.5805.mrna
Orig protein idgnl|cribi|Naga_101726g2.5805
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1139105..1139390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101726g2gene4485Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4648rna4648-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26037.1cds4636Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4648 ID=rna4648|Name=rna4648|organism=Nannochloropsis gaditana|type=mRNA|length=411bp
GGAGGGTGGGAGGGAGGGAGGGATGGAGGGAAGGGCTCAATCCATGTTCG
TAGCTGTGCGTATCCTGGGTTTTGCTCGATGGGATGTTTTCGGCGTCATG
GTACCCTTGCTCGTGATTCATTTTTCCTCCTTTTACCCTCGATGAATCTC
TCCGTGCAGGTGGCGGAGATCGAAAAACAGGCCCGAGAGCAATCGCAATT
GACGACGCTGACAACCCGCACGCAAAACGTTCACGGGTGCGTTGGGGGAG
CAAAGGGAGGGATCCTCCTAACCCTAATCCTAACCCTTACCCTAACCCTA
ACCCTAACCCTAACCCTACCTTGAACCCTACCCCGGCTGAAAGTGACGGG
ATCACGGAGGAGAGAGAGGAAGCCGTGACCACTGATTGCTTGCGTCTCAT
TCCTCCCTCTC
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protein sequence of rna4648

>rna4648-protein ID=rna4648-protein|Name=rna4648|organism=Nannochloropsis gaditana|type=polypeptide|length=76bp
MEGLCINVGGKRPFLRSTCSRKLGLRGADGLGREGRWKEWRQPSRSFVLM
WPIQAQVRCTRRGAKKSGGPRLVKDD
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mRNA from alignment at CM002463.1:1139105..1139390+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4648 ID=rna4648|Name=rna4648|organism=Nannochloropsis gaditana|type=mRNA|length=286bp|location=Sequence derived from alignment at CM002463.1:1139105..1139390+ (Nannochloropsis gaditana)
ATGGAAGGTCTATGCATCAATGTCGGTGGGAAACGGCCATTCTTAGTAGT
GCTACTATGAAGAGATGACAAGATAAAAACTCAGCCGGTGTCATGTGTAG
CGTTCCACGTGTAGTCGGAAACTTGGGCTAAGAGGGGCCGATGGACTCGG
TCGTGAAGGTCGATGGAAGGAATGGAGACAACCTTCTCGAAGCTTTGTCC
TTATGTGGCCCATTCAGGCACAGGTACGATGCACTCGGAGAGGTGCAAAG
AAAAGCGGAGGACCAAGATTGGTGAAAGACGATTAG
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Coding sequence (CDS) from alignment at CM002463.1:1139105..1139390+

>rna4648 ID=rna4648|Name=rna4648|organism=Nannochloropsis gaditana|type=CDS|length=462bp|location=Sequence derived from alignment at CM002463.1:1139105..1139390+ (Nannochloropsis gaditana)
ATGGAAGGTCTATGCATCAATGTCGGTGGGAAACGGCCATTCTTACGTTC
CACGTGTAGTCGGAAACTTGGGCTAAGAGGGGCCGATGGACTCGGTCGTG
AAGGTCGATGGAAGGAATGGAGACAACCTTCTCGAAGCTTTGTCCTTATG
TGGCCCATTCAGGCACAGGTACGATGCACTCGGAGAGGTGCAAAGAAAAG
CGGAGGACCAAGATTGGTGAAAGACGATTAGATGGAAGGTCTATGCATCA
ATGTCGGTGGGAAACGGCCATTCTTACGTTCCACGTGTAGTCGGAAACTT
GGGCTAAGAGGGGCCGATGGACTCGGTCGTGAAGGTCGATGGAAGGAATG
GAGACAACCTTCTCGAAGCTTTGTCCTTATGTGGCCCATTCAGGCACAGG
TACGATGCACTCGGAGAGGTGCAAAGAAAAGCGGAGGACCAAGATTGGTG
AAAGACGATTAG
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Synonyms
Publications