rna4645, rna4645 (mRNA) Nannochloropsis gaditana

Overview
Namerna4645
Unique Namerna4645
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length294
Alignment locationCM002463.1:1132643..1133439 +

Link to JBrowse

Properties
Property NameValue
Productpre-mrna-processing-splicing factor 8
Orig transcript idgnl|cribi|Naga_102454g1.8523.mrna
Orig protein idgnl|cribi|Naga_102454g1.8523
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1132643..1133439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102454g1gene4482Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4645rna4645-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26040.1cds4633Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4645 ID=rna4645|Name=rna4645|organism=Nannochloropsis gaditana|type=mRNA|length=294bp
ATGGTAGCCCATGGCGTGTCCGTATTTCATCTCCCTCTTTCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTTTCTCTCCAGCTACGTAAAGCAGAAGGCAG
ACTGGTGGACCGATCACGCCCACTACAATCGAGAGCGTATCAAACGCGGC
GCCACGGTGGATAAGACCGTGTGCAAGAAGAACCTGGGGCGGTTGACGCG
CTTGTGGCTGAAGGCCGAGCAGGCACTCATCCCTTCTTCCCACCCTTTTT
CCCCCCTTCTTTGGCCCTTTCTGATCTCAGGAACGACAACATAA
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protein sequence of rna4645

>rna4645-protein ID=rna4645-protein|Name=rna4645|organism=Nannochloropsis gaditana|type=polypeptide|length=91bp
MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHT
NSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAGLRR
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mRNA from alignment at CM002463.1:1132643..1133439+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4645 ID=rna4645|Name=rna4645|organism=Nannochloropsis gaditana|type=mRNA|length=797bp|location=Sequence derived from alignment at CM002463.1:1132643..1133439+ (Nannochloropsis gaditana)
tcagggGATCAACAACCTGCAAGACATCTGGGATACCAGCCAAGGGGAGT
GCGTCGTCATGCTCGAGACGCAGTTGGAGAATATCTACGAGAAAATAGAT
CTCACCCTGCTGAACCGGTAgggtttttcctcctccttctttcttgtTTT
TGGTATCGGCGTTGACTTTTATCGTACTTGGATGTATATATCTATATGTT
CATAGTTTCGACATCACAATGATATTATGTGATGCCTCCCCTCGTCATTT
CACTTCCCCGCCTCGCATATTGTGCAGCGCGCCAGCCTACCACTGACGTC
ATGCtcaccatccctcccaccctccctccctcccctcctccctcagcctc
ttgcgcctggtggtggagcaCTCGCTCGCCGACTACATGACGAACAAGAA
CAACGTCGTCATCGCCTACAAGGATATGCAACATACCAACTCCTACGGCA
TCCTTCGGTACGTggcgtttcccctcccccccctcttttttcttttttta
tTCCCCAGAGTTGTGCCTCTTTTGTTGTTTCCCACCCGACGATCCTCGGT
CGCTGCGCCTGGCGTAAAGTCAGACTCGAAATTAGACCTCAAGCCTCCCT
TCCGTTCTTTCGTGgggctctctccctccctcccttccttcccttcctta
ccgcctccccccctcgtcctcccccaccccttggATCTCAGCGGCTTGCA
attcgcctccttcctcgtccagtACTACGGCCTCATCTTGGACCTCCTGG
TGCTGGGATTGAAGAGGGCGAGCGAGATGGCGGGCCTCCGCAGGTAG
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Coding sequence (CDS) from alignment at CM002463.1:1132643..1133439+

>rna4645 ID=rna4645|Name=rna4645|organism=Nannochloropsis gaditana|type=CDS|length=828bp|location=Sequence derived from alignment at CM002463.1:1132643..1133439+ (Nannochloropsis gaditana)
ATGCTCGAGACGCAGTTGGAGAATATCTACGAGAAAATAGATCTCACCCT
GCTGAACCGcctcttgcgcctggtggtggagcaCTCGCTCGCCGACTACA
TGACGAACAAGAACAACGTCGTCATCGCCTACAAGGATATGCAACATACC
AACTCCTACGGCATCCTTCGCGGCTTGCAattcgcctccttcctcgtcca
gtACTACGGCCTCATCTTGGACCTCCTGGTGCTGGGATTGAAGAGGGCGA
GCGAGATGGCGGGCCTCCGCAGGTAGATGCTCGAGACGCAGTTGGAGAAT
ATCTACGAGAAAATAGATCTCACCCTGCTGAACCGcctcttgcgcctggt
ggtggagcaCTCGCTCGCCGACTACATGACGAACAAGAACAACGTCGTCA
TCGCCTACAAGGATATGCAACATACCAACTCCTACGGCATCCTTCGCGGC
TTGCAattcgcctccttcctcgtccagtACTACGGCCTCATCTTGGACCT
CCTGGTGCTGGGATTGAAGAGGGCGAGCGAGATGGCGGGCCTCCGCAGGT
AGATGCTCGAGACGCAGTTGGAGAATATCTACGAGAAAATAGATCTCACC
CTGCTGAACCGcctcttgcgcctggtggtggagcaCTCGCTCGCCGACTA
CATGACGAACAAGAACAACGTCGTCATCGCCTACAAGGATATGCAACATA
CCAACTCCTACGGCATCCTTCGCGGCTTGCAattcgcctccttcctcgtc
cagtACTACGGCCTCATCTTGGACCTCCTGGTGCTGGGATTGAAGAGGGC
GAGCGAGATGGCGGGCCTCCGCAGGTAG
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Synonyms
Publications