EWM26040.1, cds4633 (CDS) Nannochloropsis gaditana

Overview
NameEWM26040.1
Unique Namecds4633
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:1132701..1132759 +
Alignment locationCM002463.1:1132989..1133099 +
Alignment locationCM002463.1:1133334..1133439 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26040.1
Productpre-mrna-processing-splicing factor 8
Orig transcript idgnl|cribi|Naga_102454g1.8523.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1132701..1132759 +
CM002463.1supercontigCM002463.1:1132989..1133099 +
CM002463.1supercontigCM002463.1:1133334..1133439 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005634nucleus
GO:0005681spliceosomal complex
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR027652PRP8
IPR019582RRM_spliceosomal_PrP8
Homology
BLAST of EWM26040.1 vs. NCBI_GenBank
Match: gi|585107973|gb|EWM26040.1| (pre-mrna-processing-splicing factor 8 [Nannochloropsis gaditana])

HSP 1 Score: 181.415 bits (459), Expect = 6.894e-58
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
Query:    1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAGLRR 91
            MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAGLRR
Sbjct:    1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAGLRR 91          
BLAST of EWM26040.1 vs. NCBI_GenBank
Match: gi|663292525|ref|XP_008502178.1| (PREDICTED: pre-mRNA-processing-splicing factor 8-like, partial [Calypte anna])

HSP 1 Score: 132.88 bits (333), Expect = 3.234e-37
Identity = 71/88 (80.68%), Postives = 82/88 (93.18%), Query Frame = 0
Query:    1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAG 88
            MLE++ E +YEKIDLTLLNRLLRL+V+H++ADYMT KNNVVI YKDM HTNSYGI+RGLQFASF+VQYYGL++DLLVLGL RASEMAG
Sbjct:   78 MLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAG 165          
BLAST of EWM26040.1 vs. NCBI_GenBank
Match: gi|1032923879|ref|XP_016819171.1| (PREDICTED: pre-mRNA-processing-splicing factor 8, partial [Cricetulus griseus])

HSP 1 Score: 134.035 bits (336), Expect = 1.744e-34
Identity = 71/88 (80.68%), Postives = 82/88 (93.18%), Query Frame = 0
Query:    1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAG 88
            MLE++ E +YEKIDLTLLNRLLRL+V+H++ADYMT KNNVVI YKDM HTNSYGI+RGLQFASF+VQYYGL++DLLVLGL RASEMAG
Sbjct:  696 MLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAG 783          
BLAST of EWM26040.1 vs. NCBI_GenBank
Match: gi|852748964|ref|XP_012871766.1| (PREDICTED: pre-mRNA-processing-splicing factor 8 [Dipodomys ordii])

HSP 1 Score: 133.65 bits (335), Expect = 2.183e-34
Identity = 71/88 (80.68%), Postives = 82/88 (93.18%), Query Frame = 0
Query:    1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAG 88
            MLE++ E +YEKIDLTLLNRLLRL+V+H++ADYMT KNNVVI YKDM HTNSYGI+RGLQFASF+VQYYGL++DLLVLGL RASEMAG
Sbjct:  976 MLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAG 1063          
BLAST of EWM26040.1 vs. NCBI_GenBank
Match: gi|700392273|ref|XP_009936550.1| (PREDICTED: pre-mRNA-processing-splicing factor 8 [Opisthocomus hoazin])

HSP 1 Score: 133.65 bits (335), Expect = 2.321e-34
Identity = 71/88 (80.68%), Postives = 82/88 (93.18%), Query Frame = 0
Query:    1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAG 88
            MLE++ E +YEKIDLTLLNRLLRL+V+H++ADYMT KNNVVI YKDM HTNSYGI+RGLQFASF+VQYYGL++DLLVLGL RASEMAG
Sbjct:  889 MLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAG 976          
BLAST of EWM26040.1 vs. NCBI_GenBank
Match: gi|355753598|gb|EHH57563.1| (Splicing factor Prp8 [Macaca fascicularis])

HSP 1 Score: 133.65 bits (335), Expect = 2.434e-34
Identity = 71/88 (80.68%), Postives = 82/88 (93.18%), Query Frame = 0
Query:    1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAG 88
            MLE++ E +YEKIDLTLLNRLLRL+V+H++ADYMT KNNVVI YKDM HTNSYGI+RGLQFASF+VQYYGL++DLLVLGL RASEMAG
Sbjct:  975 MLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAG 1062          
BLAST of EWM26040.1 vs. NCBI_GenBank
Match: gi|706141040|ref|XP_010203287.1| (PREDICTED: pre-mRNA-processing-splicing factor 8, partial [Colius striatus])

HSP 1 Score: 133.265 bits (334), Expect = 3.106e-34
Identity = 71/88 (80.68%), Postives = 82/88 (93.18%), Query Frame = 0
Query:    1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAG 88
            MLE++ E +YEKIDLTLLNRLLRL+V+H++ADYMT KNNVVI YKDM HTNSYGI+RGLQFASF+VQYYGL++DLLVLGL RASEMAG
Sbjct:  934 MLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAG 1021          
BLAST of EWM26040.1 vs. NCBI_GenBank
Match: gi|47207078|emb|CAF90819.1| (unnamed protein product, partial [Tetraodon nigroviridis])

HSP 1 Score: 133.265 bits (334), Expect = 3.212e-34
Identity = 71/88 (80.68%), Postives = 82/88 (93.18%), Query Frame = 0
Query:    1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAG 88
            MLE++ E +YEKIDLTLLNRLLRL+V+H++ADYMT KNNVVI YKDM HTNSYGI+RGLQFASF+VQYYGL++DLLVLGL RASEMAG
Sbjct:  332 MLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAG 419          
BLAST of EWM26040.1 vs. NCBI_GenBank
Match: gi|704233928|ref|XP_010157406.1| (PREDICTED: pre-mRNA-processing-splicing factor 8, partial [Eurypyga helias])

HSP 1 Score: 133.265 bits (334), Expect = 3.261e-34
Identity = 71/88 (80.68%), Postives = 82/88 (93.18%), Query Frame = 0
Query:    1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAG 88
            MLE++ E +YEKIDLTLLNRLLRL+V+H++ADYMT KNNVVI YKDM HTNSYGI+RGLQFASF+VQYYGL++DLLVLGL RASEMAG
Sbjct:  936 MLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAG 1023          
BLAST of EWM26040.1 vs. NCBI_GenBank
Match: gi|950368700|dbj|BAT46561.1| (pre-mRNA processing factor 8, partial [Tokudaia muenninki])

HSP 1 Score: 133.265 bits (334), Expect = 3.384e-34
Identity = 71/88 (80.68%), Postives = 82/88 (93.18%), Query Frame = 0
Query:    1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAG 88
            MLE++ E +YEKIDLTLLNRLLRL+V+H++ADYMT KNNVVI YKDM HTNSYGI+RGLQFASF+VQYYGL++DLLVLGL RASEMAG
Sbjct:  976 MLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAG 1063          
The following BLAST results are available for this feature:
BLAST of EWM26040.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107973|gb|EWM26040.1|6.894e-58100.00pre-mrna-processing-splicing factor 8 [Nannochloro... [more]
gi|663292525|ref|XP_008502178.1|3.234e-3780.68PREDICTED: pre-mRNA-processing-splicing factor 8-l... [more]
gi|1032923879|ref|XP_016819171.1|1.744e-3480.68PREDICTED: pre-mRNA-processing-splicing factor 8, ... [more]
gi|852748964|ref|XP_012871766.1|2.183e-3480.68PREDICTED: pre-mRNA-processing-splicing factor 8 [... [more]
gi|700392273|ref|XP_009936550.1|2.321e-3480.68PREDICTED: pre-mRNA-processing-splicing factor 8 [... [more]
gi|355753598|gb|EHH57563.1|2.434e-3480.68Splicing factor Prp8 [Macaca fascicularis][more]
gi|706141040|ref|XP_010203287.1|3.106e-3480.68PREDICTED: pre-mRNA-processing-splicing factor 8, ... [more]
gi|47207078|emb|CAF90819.1|3.212e-3480.68unnamed protein product, partial [Tetraodon nigrov... [more]
gi|704233928|ref|XP_010157406.1|3.261e-3480.68PREDICTED: pre-mRNA-processing-splicing factor 8, ... [more]
gi|950368700|dbj|BAT46561.1|3.384e-3480.68pre-mRNA processing factor 8, partial [Tokudaia mu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4645rna4645Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications