EWM26040.1, cds4633 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26040.1 vs. NCBI_GenBank
Match: gi|585107973|gb|EWM26040.1| (pre-mrna-processing-splicing factor 8 [Nannochloropsis gaditana]) HSP 1 Score: 181.415 bits (459), Expect = 6.894e-58 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
Query: 1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAGLRR 91
MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAGLRR
Sbjct: 1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAGLRR 91
BLAST of EWM26040.1 vs. NCBI_GenBank
Match: gi|663292525|ref|XP_008502178.1| (PREDICTED: pre-mRNA-processing-splicing factor 8-like, partial [Calypte anna]) HSP 1 Score: 132.88 bits (333), Expect = 3.234e-37 Identity = 71/88 (80.68%), Postives = 82/88 (93.18%), Query Frame = 0
Query: 1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAG 88
MLE++ E +YEKIDLTLLNRLLRL+V+H++ADYMT KNNVVI YKDM HTNSYGI+RGLQFASF+VQYYGL++DLLVLGL RASEMAG
Sbjct: 78 MLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAG 165
BLAST of EWM26040.1 vs. NCBI_GenBank
Match: gi|1032923879|ref|XP_016819171.1| (PREDICTED: pre-mRNA-processing-splicing factor 8, partial [Cricetulus griseus]) HSP 1 Score: 134.035 bits (336), Expect = 1.744e-34 Identity = 71/88 (80.68%), Postives = 82/88 (93.18%), Query Frame = 0
Query: 1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAG 88
MLE++ E +YEKIDLTLLNRLLRL+V+H++ADYMT KNNVVI YKDM HTNSYGI+RGLQFASF+VQYYGL++DLLVLGL RASEMAG
Sbjct: 696 MLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAG 783
BLAST of EWM26040.1 vs. NCBI_GenBank
Match: gi|852748964|ref|XP_012871766.1| (PREDICTED: pre-mRNA-processing-splicing factor 8 [Dipodomys ordii]) HSP 1 Score: 133.65 bits (335), Expect = 2.183e-34 Identity = 71/88 (80.68%), Postives = 82/88 (93.18%), Query Frame = 0
Query: 1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAG 88
MLE++ E +YEKIDLTLLNRLLRL+V+H++ADYMT KNNVVI YKDM HTNSYGI+RGLQFASF+VQYYGL++DLLVLGL RASEMAG
Sbjct: 976 MLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAG 1063
BLAST of EWM26040.1 vs. NCBI_GenBank
Match: gi|700392273|ref|XP_009936550.1| (PREDICTED: pre-mRNA-processing-splicing factor 8 [Opisthocomus hoazin]) HSP 1 Score: 133.65 bits (335), Expect = 2.321e-34 Identity = 71/88 (80.68%), Postives = 82/88 (93.18%), Query Frame = 0
Query: 1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAG 88
MLE++ E +YEKIDLTLLNRLLRL+V+H++ADYMT KNNVVI YKDM HTNSYGI+RGLQFASF+VQYYGL++DLLVLGL RASEMAG
Sbjct: 889 MLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAG 976
BLAST of EWM26040.1 vs. NCBI_GenBank
Match: gi|355753598|gb|EHH57563.1| (Splicing factor Prp8 [Macaca fascicularis]) HSP 1 Score: 133.65 bits (335), Expect = 2.434e-34 Identity = 71/88 (80.68%), Postives = 82/88 (93.18%), Query Frame = 0
Query: 1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAG 88
MLE++ E +YEKIDLTLLNRLLRL+V+H++ADYMT KNNVVI YKDM HTNSYGI+RGLQFASF+VQYYGL++DLLVLGL RASEMAG
Sbjct: 975 MLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAG 1062
BLAST of EWM26040.1 vs. NCBI_GenBank
Match: gi|706141040|ref|XP_010203287.1| (PREDICTED: pre-mRNA-processing-splicing factor 8, partial [Colius striatus]) HSP 1 Score: 133.265 bits (334), Expect = 3.106e-34 Identity = 71/88 (80.68%), Postives = 82/88 (93.18%), Query Frame = 0
Query: 1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAG 88
MLE++ E +YEKIDLTLLNRLLRL+V+H++ADYMT KNNVVI YKDM HTNSYGI+RGLQFASF+VQYYGL++DLLVLGL RASEMAG
Sbjct: 934 MLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAG 1021
BLAST of EWM26040.1 vs. NCBI_GenBank
Match: gi|47207078|emb|CAF90819.1| (unnamed protein product, partial [Tetraodon nigroviridis]) HSP 1 Score: 133.265 bits (334), Expect = 3.212e-34 Identity = 71/88 (80.68%), Postives = 82/88 (93.18%), Query Frame = 0
Query: 1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAG 88
MLE++ E +YEKIDLTLLNRLLRL+V+H++ADYMT KNNVVI YKDM HTNSYGI+RGLQFASF+VQYYGL++DLLVLGL RASEMAG
Sbjct: 332 MLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAG 419
BLAST of EWM26040.1 vs. NCBI_GenBank
Match: gi|704233928|ref|XP_010157406.1| (PREDICTED: pre-mRNA-processing-splicing factor 8, partial [Eurypyga helias]) HSP 1 Score: 133.265 bits (334), Expect = 3.261e-34 Identity = 71/88 (80.68%), Postives = 82/88 (93.18%), Query Frame = 0
Query: 1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAG 88
MLE++ E +YEKIDLTLLNRLLRL+V+H++ADYMT KNNVVI YKDM HTNSYGI+RGLQFASF+VQYYGL++DLLVLGL RASEMAG
Sbjct: 936 MLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAG 1023
BLAST of EWM26040.1 vs. NCBI_GenBank
Match: gi|950368700|dbj|BAT46561.1| (pre-mRNA processing factor 8, partial [Tokudaia muenninki]) HSP 1 Score: 133.265 bits (334), Expect = 3.384e-34 Identity = 71/88 (80.68%), Postives = 82/88 (93.18%), Query Frame = 0
Query: 1 MLETQLENIYEKIDLTLLNRLLRLVVEHSLADYMTNKNNVVIAYKDMQHTNSYGILRGLQFASFLVQYYGLILDLLVLGLKRASEMAG 88
MLE++ E +YEKIDLTLLNRLLRL+V+H++ADYMT KNNVVI YKDM HTNSYGI+RGLQFASF+VQYYGL++DLLVLGL RASEMAG
Sbjct: 976 MLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAG 1063 The following BLAST results are available for this feature:
BLAST of EWM26040.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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