rna4643, rna4643 (mRNA) Nannochloropsis gaditana

Overview
Namerna4643
Unique Namerna4643
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length255
Alignment locationCM002463.1:1129858..1131500 +

Link to JBrowse

Properties
Property NameValue
Productpre-mrna-processing-splicing factor 8
Orig transcript idgnl|cribi|Naga_101742g1.7612.mrna
Orig protein idgnl|cribi|Naga_101742g1.7612
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1129858..1131500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101742g1gene4480Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4643rna4643-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26042.1cds4631Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4643 ID=rna4643|Name=rna4643|organism=Nannochloropsis gaditana|type=mRNA|length=255bp
ATGGGTTGCTCAAGGACTTCGACGGAAGGCGAATCGTCATCTACAAAGGG
CTCTTCTGGACTGGTAGGACCAAGGACTAAGGCTTGTAACGTCGGGCATG
GACCCTCGGTACCCTCAAGAAGGAGGAGGCCCTCCTTCAGGCTACCCGCC
TCCTCCTCCCTCGGGCCCTCCCCCCACCGGTTTCCCCCCGACCAACACCA
TGGGTGGCTTTACCGCACCTCCAGGTACATTGTTACATGCCTCTCTTTAT
TTTAG
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protein sequence of rna4643

>rna4643-protein ID=rna4643-protein|Name=rna4643|organism=Nannochloropsis gaditana|type=polypeptide|length=177bp
MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILR
LTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQI
RMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWL
GNLLARQFESPTLTWSCEPPLLLIYWT
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mRNA from alignment at CM002463.1:1129858..1131500+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4643 ID=rna4643|Name=rna4643|organism=Nannochloropsis gaditana|type=mRNA|length=1643bp|location=Sequence derived from alignment at CM002463.1:1129858..1131500+ (Nannochloropsis gaditana)
ATGCTcaacctcctcatccaccgGAAGAATTTGAATTGTAagtggcaggg
aagggggaaagaggaggaaagacggtAGaacagggggaaagaggagggaa
gacggtagaacagggggaggggaagagggagggtactTTCCACCAGGGTG
GCGTAGATAAgcctgacctccctcccttcctctttccctccctctctcca
gaCCTGCACCTCGACTACAATTTTAATTTAAAACCGACCAAAACGTTAAC
CACCAAGGAACGGAAGAAGAGCCGTTTCGGTAACGCCTTCCATTTGACCC
GAGAAATCCTCCGACTAACCAAGCTGATTGTGGATTCCCACATCCAGGTA
TCGCGtccgtttcccctccttctctctgcttttctctcttttttgcTCCT
cgctccgccccgccctccgccccgccctccctcccgcctccgccccgccc
tcaaGGGGTGGACCATGTTTTTATATGAGCCGCTCGTGGCGTGAGATGTC
AAGCCATACCTGGCAACCACTCACTCCCACCCTCACGGTgtatcctcctt
ctctccatccctccttccctccctccttcccttcctttcccttaGTACCG
TCTGGGCAATGTGGACGCTTTCCAGCTTGCCGATGGTCTGCAATACACAT
TCGCGCACGTCGGTCAGCTCACCGGtgagcctttcctccctacccccctt
ccttcctccctcccttcctccctccctccctgtcgcttTGCATCATGTTT
CTTTCTTTGATGGTAGACGGAACAGTTTCAAGCGTCGTTTGCGCCATAAG
CGAAGCTTTTCGAGGTCCTCCGACTTCTCTGTAGCCTCACACGGTCACGG
TTACCTGtatcgcccctccctccctccctccctccctcccaggcatGTAC
CGTTATAAATATCGGCTCATGCGCCAGATCCGCATGTGTAAAGACTTAAA
GCACGTGATCTACCACCGATTCAAAACGGGACCTGTGGGCAAGGGTCCCG
GTTGTggtacgccctccctccctccctcgctcccttccgccctccttccc
tttttcccccctcctgtccctttctttcttcctctcgcctgttttcccgc
cttttttATCTTTTGGGTCCTGCCCTTGAACGCTATAACTTGATGGGCCC
CAAGTCCTTGCGGTAtttcacttccttccctccttccctccctccctccc
tccctcaggcttTTGGGCACCCGGATGGCGAGTCTGGCTTTACTTCCTTC
GAGGTATTGTTCCTCTCCTAGAGCGCTGGTTGGGGAATCTCTTGGCCCGT
CAATTCGAGGTAAGGGagcacgcctcctccctccctcccctcttcccctc
cctccctccttgctttccttcttccattttgAATTTCGTCCTTGACAATT
TCCTCTGGGTTGTGTCAAAGTCTTGTTGCTCcgatggcggtggtggcacG
AATATCGAGAAACTTTTGGGAAAATGCTGACGCtgacctccttccttccc
tccctccctccctttctccctccctcccttcttgtaGGGCCGTCATTCCG
GGGGCGCCGCGAAAACGGTGACGAAACAACGCGCAGAGTCCCACTTTGAC
TTGGAGCTGCGAGCCGCCGTTGTTGCTGATATATTGGACATGA
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Coding sequence (CDS) from alignment at CM002463.1:1129858..1131500+

>rna4643 ID=rna4643|Name=rna4643|organism=Nannochloropsis gaditana|type=CDS|length=3204bp|location=Sequence derived from alignment at CM002463.1:1129858..1131500+ (Nannochloropsis gaditana)
ATGCTcaacctcctcatccaccgGAAGAATTTGAATTaCCTGCACCTCGA
CTACAATTTTAATTTAAAACCGACCAAAACGTTAACCACCAAGGAACGGA
AGAAGAGCCGTTTCGGTAACGCCTTCCATTTGACCCGAGAAATCCTCCGA
CTAACCAAGCTGATTGTGGATTCCCACATCCAGTACCGTCTGGGCAATGT
GGACGCTTTCCAGCTTGCCGATGGTCTGCAATACACATTCGCGCACGTCG
GTCAGCTCACCGgcatGTACCGTTATAAATATCGGCTCATGCGCCAGATC
CGCATGTGTAAAGACTTAAAGCACGTGATCTACCACCGATTCAAAACGGG
ACCTGTGGGCAAGGGTCCCGGTTGTggcttTTGGGCACCCGGATGGCGAG
TCTGGCTTTACTTCCTTCGAGGTATTGTTCCTCTCCTAGAGCGCTGGTTG
GGGAATCTCTTGGCCCGTCAATTCGAGAGTCCCACTTTGACTTGGAGCTG
CGAGCCGCCGTTGTTGCTGATATATTGGACATGAATGCTcaacctcctca
tccaccgGAAGAATTTGAATTaCCTGCACCTCGACTACAATTTTAATTTA
AAACCGACCAAAACGTTAACCACCAAGGAACGGAAGAAGAGCCGTTTCGG
TAACGCCTTCCATTTGACCCGAGAAATCCTCCGACTAACCAAGCTGATTG
TGGATTCCCACATCCAGTACCGTCTGGGCAATGTGGACGCTTTCCAGCTT
GCCGATGGTCTGCAATACACATTCGCGCACGTCGGTCAGCTCACCGgcat
GTACCGTTATAAATATCGGCTCATGCGCCAGATCCGCATGTGTAAAGACT
TAAAGCACGTGATCTACCACCGATTCAAAACGGGACCTGTGGGCAAGGGT
CCCGGTTGTggcttTTGGGCACCCGGATGGCGAGTCTGGCTTTACTTCCT
TCGAGGTATTGTTCCTCTCCTAGAGCGCTGGTTGGGGAATCTCTTGGCCC
GTCAATTCGAGAGTCCCACTTTGACTTGGAGCTGCGAGCCGCCGTTGTTG
CTGATATATTGGACATGAATGCTcaacctcctcatccaccgGAAGAATTT
GAATTaCCTGCACCTCGACTACAATTTTAATTTAAAACCGACCAAAACGT
TAACCACCAAGGAACGGAAGAAGAGCCGTTTCGGTAACGCCTTCCATTTG
ACCCGAGAAATCCTCCGACTAACCAAGCTGATTGTGGATTCCCACATCCA
GTACCGTCTGGGCAATGTGGACGCTTTCCAGCTTGCCGATGGTCTGCAAT
ACACATTCGCGCACGTCGGTCAGCTCACCGgcatGTACCGTTATAAATAT
CGGCTCATGCGCCAGATCCGCATGTGTAAAGACTTAAAGCACGTGATCTA
CCACCGATTCAAAACGGGACCTGTGGGCAAGGGTCCCGGTTGTggcttTT
GGGCACCCGGATGGCGAGTCTGGCTTTACTTCCTTCGAGGTATTGTTCCT
CTCCTAGAGCGCTGGTTGGGGAATCTCTTGGCCCGTCAATTCGAGAGTCC
CACTTTGACTTGGAGCTGCGAGCCGCCGTTGTTGCTGATATATTGGACAT
GAATGCTcaacctcctcatccaccgGAAGAATTTGAATTaCCTGCACCTC
GACTACAATTTTAATTTAAAACCGACCAAAACGTTAACCACCAAGGAACG
GAAGAAGAGCCGTTTCGGTAACGCCTTCCATTTGACCCGAGAAATCCTCC
GACTAACCAAGCTGATTGTGGATTCCCACATCCAGTACCGTCTGGGCAAT
GTGGACGCTTTCCAGCTTGCCGATGGTCTGCAATACACATTCGCGCACGT
CGGTCAGCTCACCGgcatGTACCGTTATAAATATCGGCTCATGCGCCAGA
TCCGCATGTGTAAAGACTTAAAGCACGTGATCTACCACCGATTCAAAACG
GGACCTGTGGGCAAGGGTCCCGGTTGTggcttTTGGGCACCCGGATGGCG
AGTCTGGCTTTACTTCCTTCGAGGTATTGTTCCTCTCCTAGAGCGCTGGT
TGGGGAATCTCTTGGCCCGTCAATTCGAGAGTCCCACTTTGACTTGGAGC
TGCGAGCCGCCGTTGTTGCTGATATATTGGACATGAATGCTcaacctcct
catccaccgGAAGAATTTGAATTaCCTGCACCTCGACTACAATTTTAATT
TAAAACCGACCAAAACGTTAACCACCAAGGAACGGAAGAAGAGCCGTTTC
GGTAACGCCTTCCATTTGACCCGAGAAATCCTCCGACTAACCAAGCTGAT
TGTGGATTCCCACATCCAGTACCGTCTGGGCAATGTGGACGCTTTCCAGC
TTGCCGATGGTCTGCAATACACATTCGCGCACGTCGGTCAGCTCACCGgc
atGTACCGTTATAAATATCGGCTCATGCGCCAGATCCGCATGTGTAAAGA
CTTAAAGCACGTGATCTACCACCGATTCAAAACGGGACCTGTGGGCAAGG
GTCCCGGTTGTggcttTTGGGCACCCGGATGGCGAGTCTGGCTTTACTTC
CTTCGAGGTATTGTTCCTCTCCTAGAGCGCTGGTTGGGGAATCTCTTGGC
CCGTCAATTCGAGAGTCCCACTTTGACTTGGAGCTGCGAGCCGCCGTTGT
TGCTGATATATTGGACATGAATGCTcaacctcctcatccaccgGAAGAAT
TTGAATTaCCTGCACCTCGACTACAATTTTAATTTAAAACCGACCAAAAC
GTTAACCACCAAGGAACGGAAGAAGAGCCGTTTCGGTAACGCCTTCCATT
TGACCCGAGAAATCCTCCGACTAACCAAGCTGATTGTGGATTCCCACATC
CAGTACCGTCTGGGCAATGTGGACGCTTTCCAGCTTGCCGATGGTCTGCA
ATACACATTCGCGCACGTCGGTCAGCTCACCGgcatGTACCGTTATAAAT
ATCGGCTCATGCGCCAGATCCGCATGTGTAAAGACTTAAAGCACGTGATC
TACCACCGATTCAAAACGGGACCTGTGGGCAAGGGTCCCGGTTGTggctt
TTGGGCACCCGGATGGCGAGTCTGGCTTTACTTCCTTCGAGGTATTGTTC
CTCTCCTAGAGCGCTGGTTGGGGAATCTCTTGGCCCGTCAATTCGAGAGT
CCCACTTTGACTTGGAGCTGCGAGCCGCCGTTGTTGCTGATATATTGGAC
ATGA
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Synonyms
Publications