EWM26042.1, cds4631 (CDS) Nannochloropsis gaditana

Overview
NameEWM26042.1
Unique Namecds4631
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:1129858..1129894 +
Alignment locationCM002463.1:1130059..1130204 +
Alignment locationCM002463.1:1130453..1130531 +
Alignment locationCM002463.1:1130750..1130863 +
Alignment locationCM002463.1:1131066..1131166 +
Alignment locationCM002463.1:1131444..1131500 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26042.1
Productpre-mrna-processing-splicing factor 8
Orig transcript idgnl|cribi|Naga_101742g1.7612.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1129858..1129894 +
CM002463.1supercontigCM002463.1:1130059..1130204 +
CM002463.1supercontigCM002463.1:1130453..1130531 +
CM002463.1supercontigCM002463.1:1130750..1130863 +
CM002463.1supercontigCM002463.1:1131066..1131166 +
CM002463.1supercontigCM002463.1:1131444..1131500 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005681spliceosomal complex
Vocabulary: INTERPRO
TermDefinition
IPR027652PRP8
IPR012592PROCN
Homology
BLAST of EWM26042.1 vs. NCBI_GenBank
Match: gi|585107977|gb|EWM26042.1| (pre-mrna-processing-splicing factor 8 [Nannochloropsis gaditana])

HSP 1 Score: 365.925 bits (938), Expect = 3.261e-128
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0
Query:    1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFESPTLTWSCEPPLLLIYWT 177
            MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFESPTLTWSCEPPLLLIYWT
Sbjct:    1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFESPTLTWSCEPPLLLIYWT 177          
BLAST of EWM26042.1 vs. NCBI_GenBank
Match: gi|66801807|gb|AAY56488.1| (PRP8P, partial [Osmerus mordax])

HSP 1 Score: 310.842 bits (795), Expect = 7.229e-105
Identity = 143/160 (89.38%), Postives = 154/160 (96.25%), Query Frame = 0
Query:    1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFES 160
            MLNLLIHRKNLNYLHLDYNFNLKP KTLTTKERKKSRFGNAFHL RE+LRL+KL+VDSH+QYRLGNVDAFQL+DG+QY FAHVGQLTGMYRYKY+LMRQIRMCKDLKH+IY+RF TGPVGKGPGCGFWAPGWRVWL+F+RGI PLLERWLGNLLARQFE 
Sbjct:   57 MLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGIQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQFEG 216          
BLAST of EWM26042.1 vs. NCBI_GenBank
Match: gi|66801817|gb|AAY56489.1| (PRP8P, partial [Clupea harengus])

HSP 1 Score: 310.071 bits (793), Expect = 1.006e-104
Identity = 144/160 (90.00%), Postives = 154/160 (96.25%), Query Frame = 0
Query:    1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFES 160
            MLNLLIHRKNLNYLHLDYNFNLKP KTLTTKERKKSRFGNAFHL RE+LRL+KL+VDSH+QYRLGNVDAFQL+DGLQY FAHVGQLTGMYRYKY+LMRQIRMCKDLKH+IY+RF TGPVGKGPGCGFWAPGWRVWL+F+RGI PLLERWLGNLLARQFE 
Sbjct:   23 MLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQFEG 182          
BLAST of EWM26042.1 vs. NCBI_GenBank
Match: gi|344235340|gb|EGV91443.1| (Pre-mRNA-processing-splicing factor 8 [Cricetulus griseus])

HSP 1 Score: 310.457 bits (794), Expect = 4.477e-104
Identity = 145/159 (91.19%), Postives = 153/159 (96.23%), Query Frame = 0
Query:    1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFE 159
            MLNLLIHRKNLNYLHLDYNFNLKP KTLTTKERKKSRFGNAFHL RE+LRLTKL+VDSH+QYRLGNVDAFQLADGLQY FAHVGQLTGMYRYKY+LMRQIRMCKDLKH+IY+RF TGPVGKGPGCGFWA GWRVWL+F+RGI PLLERWLGNLLARQFE
Sbjct:  156 MLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQFE 314          
BLAST of EWM26042.1 vs. NCBI_GenBank
Match: gi|752360943|gb|KIO18959.1| (hypothetical protein M407DRAFT_11635 [Tulasnella calospora MUT 4182])

HSP 1 Score: 308.145 bits (788), Expect = 9.895e-104
Identity = 143/159 (89.94%), Postives = 152/159 (95.60%), Query Frame = 0
Query:    1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFE 159
            MLNLLIHRKNLNYLHLDYN NLKP KTLTTKERKKSRFGNAFHL REILRLTKLIVD+H+QYRLGNVDAFQLAD LQY FAH+G LTGMYRYKY+LMRQ+RMCKDLKH+IY+RF TGPVGKGPGCGFWAPGWRVWL+F+RGIVPLLERWLGNLLARQFE
Sbjct:   37 MLNLLIHRKNLNYLHLDYNMNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLIVDAHVQYRLGNVDAFQLADALQYIFAHIGALTGMYRYKYKLMRQVRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGIVPLLERWLGNLLARQFE 195          
BLAST of EWM26042.1 vs. NCBI_GenBank
Match: gi|480328105|gb|AGJ83754.1| (pre-mRNA-processing-splicing factor 8-like protein, partial [Caragana korshinskii])

HSP 1 Score: 308.531 bits (789), Expect = 1.772e-103
Identity = 146/160 (91.25%), Postives = 155/160 (96.88%), Query Frame = 0
Query:    1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFES 160
            MLNLLIHRKNLNYLHLDYNFNLKP KTLTTKERKKSRFGNAFHL REILRLTKL+VD+++Q+RLGNVDAFQLADGLQYTF+HVGQLTGMYRYKYRLMRQIRMCKDLKH+IY+RF TGPVGKGPGCGFWAP WRVWL+FLRGIVPLLERWLGNLLARQFE 
Sbjct:   40 MLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYTFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEG 199          
BLAST of EWM26042.1 vs. NCBI_GenBank
Match: gi|625230067|ref|XP_003516043.2| (PREDICTED: pre-mRNA-processing-splicing factor 8 isoform X1, partial [Cricetulus griseus])

HSP 1 Score: 308.916 bits (790), Expect = 1.532e-102
Identity = 145/159 (91.19%), Postives = 153/159 (96.23%), Query Frame = 0
Query:    1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFE 159
            MLNLLIHRKNLNYLHLDYNFNLKP KTLTTKERKKSRFGNAFHL RE+LRLTKL+VDSH+QYRLGNVDAFQLADGLQY FAHVGQLTGMYRYKY+LMRQIRMCKDLKH+IY+RF TGPVGKGPGCGFWA GWRVWL+F+RGI PLLERWLGNLLARQFE
Sbjct:  223 MLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQFE 381          
BLAST of EWM26042.1 vs. NCBI_GenBank
Match: gi|1142822492|gb|AQK80579.1| (Pre-mRNA-processing-splicing factor 8A [Zea mays])

HSP 1 Score: 308.531 bits (789), Expect = 2.430e-102
Identity = 146/159 (91.82%), Postives = 154/159 (96.86%), Query Frame = 0
Query:    1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFE 159
            MLNLLIHRKNLNYLHLDYNFNLKP KTLTTKERKKSRFGNAFHL REILRLTKL+VD++IQ+RLGNVDAFQLADGLQY F+HVGQLTGMYRYKYRLMRQIRMCKDLKH+IY+RF TGPVGKGPGCGFWAP WRVWL+FLRGIVPLLERWLGNLLARQFE
Sbjct:   91 MLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFE 249          
BLAST of EWM26042.1 vs. NCBI_GenBank
Match: gi|1142843724|gb|AQL01810.1| (Pre-mRNA-processing-splicing factor 8A [Zea mays])

HSP 1 Score: 308.531 bits (789), Expect = 2.457e-102
Identity = 146/159 (91.82%), Postives = 154/159 (96.86%), Query Frame = 0
Query:    1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFE 159
            MLNLLIHRKNLNYLHLDYNFNLKP KTLTTKERKKSRFGNAFHL REILRLTKL+VD++IQ+RLGNVDAFQLADGLQY F+HVGQLTGMYRYKYRLMRQIRMCKDLKH+IY+RF TGPVGKGPGCGFWAP WRVWL+FLRGIVPLLERWLGNLLARQFE
Sbjct:   91 MLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFE 249          
BLAST of EWM26042.1 vs. NCBI_GenBank
Match: gi|402579999|gb|EJW73949.1| (hypothetical protein WUBG_15145, partial [Wuchereria bancrofti])

HSP 1 Score: 303.523 bits (776), Expect = 6.994e-102
Identity = 140/159 (88.05%), Postives = 152/159 (95.60%), Query Frame = 0
Query:    1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFE 159
            MLNLLIHRKNLNYLHLDYNFNLKP KTLTTKERKKSRFGNAFHL REILRLTKL+VD+H+QYRL NVDA+QLADGLQY F+HVGQLTGMYRYKY+LMRQ+RMCKDLKH+IY+RF TGPVGKGPGCG WAPGWRVWL+F+RGI PLLERWLGNLL+RQFE
Sbjct:   65 MLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDAHVQYRLNNVDAYQLADGLQYIFSHVGQLTGMYRYKYKLMRQVRMCKDLKHLIYYRFNTGPVGKGPGCGVWAPGWRVWLFFMRGITPLLERWLGNLLSRQFE 223          
The following BLAST results are available for this feature:
BLAST of EWM26042.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107977|gb|EWM26042.1|3.261e-128100.00pre-mrna-processing-splicing factor 8 [Nannochloro... [more]
gi|66801807|gb|AAY56488.1|7.229e-10589.38PRP8P, partial [Osmerus mordax][more]
gi|66801817|gb|AAY56489.1|1.006e-10490.00PRP8P, partial [Clupea harengus][more]
gi|344235340|gb|EGV91443.1|4.477e-10491.19Pre-mRNA-processing-splicing factor 8 [Cricetulus ... [more]
gi|752360943|gb|KIO18959.1|9.895e-10489.94hypothetical protein M407DRAFT_11635 [Tulasnella c... [more]
gi|480328105|gb|AGJ83754.1|1.772e-10391.25pre-mRNA-processing-splicing factor 8-like protein... [more]
gi|625230067|ref|XP_003516043.2|1.532e-10291.19PREDICTED: pre-mRNA-processing-splicing factor 8 i... [more]
gi|1142822492|gb|AQK80579.1|2.430e-10291.82Pre-mRNA-processing-splicing factor 8A [Zea mays][more]
gi|1142843724|gb|AQL01810.1|2.457e-10291.82Pre-mRNA-processing-splicing factor 8A [Zea mays][more]
gi|402579999|gb|EJW73949.1|6.994e-10288.05hypothetical protein WUBG_15145, partial [Wucherer... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4643rna4643Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications