EWM26042.1, cds4631 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26042.1 vs. NCBI_GenBank
Match: gi|585107977|gb|EWM26042.1| (pre-mrna-processing-splicing factor 8 [Nannochloropsis gaditana]) HSP 1 Score: 365.925 bits (938), Expect = 3.261e-128 Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0 Query: 1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFESPTLTWSCEPPLLLIYWT 177 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFESPTLTWSCEPPLLLIYWT Sbjct: 1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFESPTLTWSCEPPLLLIYWT 177
BLAST of EWM26042.1 vs. NCBI_GenBank
Match: gi|66801807|gb|AAY56488.1| (PRP8P, partial [Osmerus mordax]) HSP 1 Score: 310.842 bits (795), Expect = 7.229e-105 Identity = 143/160 (89.38%), Postives = 154/160 (96.25%), Query Frame = 0 Query: 1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFES 160 MLNLLIHRKNLNYLHLDYNFNLKP KTLTTKERKKSRFGNAFHL RE+LRL+KL+VDSH+QYRLGNVDAFQL+DG+QY FAHVGQLTGMYRYKY+LMRQIRMCKDLKH+IY+RF TGPVGKGPGCGFWAPGWRVWL+F+RGI PLLERWLGNLLARQFE Sbjct: 57 MLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGIQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQFEG 216
BLAST of EWM26042.1 vs. NCBI_GenBank
Match: gi|66801817|gb|AAY56489.1| (PRP8P, partial [Clupea harengus]) HSP 1 Score: 310.071 bits (793), Expect = 1.006e-104 Identity = 144/160 (90.00%), Postives = 154/160 (96.25%), Query Frame = 0 Query: 1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFES 160 MLNLLIHRKNLNYLHLDYNFNLKP KTLTTKERKKSRFGNAFHL RE+LRL+KL+VDSH+QYRLGNVDAFQL+DGLQY FAHVGQLTGMYRYKY+LMRQIRMCKDLKH+IY+RF TGPVGKGPGCGFWAPGWRVWL+F+RGI PLLERWLGNLLARQFE Sbjct: 23 MLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQFEG 182
BLAST of EWM26042.1 vs. NCBI_GenBank
Match: gi|344235340|gb|EGV91443.1| (Pre-mRNA-processing-splicing factor 8 [Cricetulus griseus]) HSP 1 Score: 310.457 bits (794), Expect = 4.477e-104 Identity = 145/159 (91.19%), Postives = 153/159 (96.23%), Query Frame = 0 Query: 1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFE 159 MLNLLIHRKNLNYLHLDYNFNLKP KTLTTKERKKSRFGNAFHL RE+LRLTKL+VDSH+QYRLGNVDAFQLADGLQY FAHVGQLTGMYRYKY+LMRQIRMCKDLKH+IY+RF TGPVGKGPGCGFWA GWRVWL+F+RGI PLLERWLGNLLARQFE Sbjct: 156 MLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQFE 314
BLAST of EWM26042.1 vs. NCBI_GenBank
Match: gi|752360943|gb|KIO18959.1| (hypothetical protein M407DRAFT_11635 [Tulasnella calospora MUT 4182]) HSP 1 Score: 308.145 bits (788), Expect = 9.895e-104 Identity = 143/159 (89.94%), Postives = 152/159 (95.60%), Query Frame = 0 Query: 1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFE 159 MLNLLIHRKNLNYLHLDYN NLKP KTLTTKERKKSRFGNAFHL REILRLTKLIVD+H+QYRLGNVDAFQLAD LQY FAH+G LTGMYRYKY+LMRQ+RMCKDLKH+IY+RF TGPVGKGPGCGFWAPGWRVWL+F+RGIVPLLERWLGNLLARQFE Sbjct: 37 MLNLLIHRKNLNYLHLDYNMNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLIVDAHVQYRLGNVDAFQLADALQYIFAHIGALTGMYRYKYKLMRQVRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGIVPLLERWLGNLLARQFE 195
BLAST of EWM26042.1 vs. NCBI_GenBank
Match: gi|480328105|gb|AGJ83754.1| (pre-mRNA-processing-splicing factor 8-like protein, partial [Caragana korshinskii]) HSP 1 Score: 308.531 bits (789), Expect = 1.772e-103 Identity = 146/160 (91.25%), Postives = 155/160 (96.88%), Query Frame = 0 Query: 1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFES 160 MLNLLIHRKNLNYLHLDYNFNLKP KTLTTKERKKSRFGNAFHL REILRLTKL+VD+++Q+RLGNVDAFQLADGLQYTF+HVGQLTGMYRYKYRLMRQIRMCKDLKH+IY+RF TGPVGKGPGCGFWAP WRVWL+FLRGIVPLLERWLGNLLARQFE Sbjct: 40 MLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYTFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEG 199
BLAST of EWM26042.1 vs. NCBI_GenBank
Match: gi|625230067|ref|XP_003516043.2| (PREDICTED: pre-mRNA-processing-splicing factor 8 isoform X1, partial [Cricetulus griseus]) HSP 1 Score: 308.916 bits (790), Expect = 1.532e-102 Identity = 145/159 (91.19%), Postives = 153/159 (96.23%), Query Frame = 0 Query: 1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFE 159 MLNLLIHRKNLNYLHLDYNFNLKP KTLTTKERKKSRFGNAFHL RE+LRLTKL+VDSH+QYRLGNVDAFQLADGLQY FAHVGQLTGMYRYKY+LMRQIRMCKDLKH+IY+RF TGPVGKGPGCGFWA GWRVWL+F+RGI PLLERWLGNLLARQFE Sbjct: 223 MLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQFE 381
BLAST of EWM26042.1 vs. NCBI_GenBank
Match: gi|1142822492|gb|AQK80579.1| (Pre-mRNA-processing-splicing factor 8A [Zea mays]) HSP 1 Score: 308.531 bits (789), Expect = 2.430e-102 Identity = 146/159 (91.82%), Postives = 154/159 (96.86%), Query Frame = 0 Query: 1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFE 159 MLNLLIHRKNLNYLHLDYNFNLKP KTLTTKERKKSRFGNAFHL REILRLTKL+VD++IQ+RLGNVDAFQLADGLQY F+HVGQLTGMYRYKYRLMRQIRMCKDLKH+IY+RF TGPVGKGPGCGFWAP WRVWL+FLRGIVPLLERWLGNLLARQFE Sbjct: 91 MLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFE 249
BLAST of EWM26042.1 vs. NCBI_GenBank
Match: gi|1142843724|gb|AQL01810.1| (Pre-mRNA-processing-splicing factor 8A [Zea mays]) HSP 1 Score: 308.531 bits (789), Expect = 2.457e-102 Identity = 146/159 (91.82%), Postives = 154/159 (96.86%), Query Frame = 0 Query: 1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFE 159 MLNLLIHRKNLNYLHLDYNFNLKP KTLTTKERKKSRFGNAFHL REILRLTKL+VD++IQ+RLGNVDAFQLADGLQY F+HVGQLTGMYRYKYRLMRQIRMCKDLKH+IY+RF TGPVGKGPGCGFWAP WRVWL+FLRGIVPLLERWLGNLLARQFE Sbjct: 91 MLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFE 249
BLAST of EWM26042.1 vs. NCBI_GenBank
Match: gi|402579999|gb|EJW73949.1| (hypothetical protein WUBG_15145, partial [Wuchereria bancrofti]) HSP 1 Score: 303.523 bits (776), Expect = 6.994e-102 Identity = 140/159 (88.05%), Postives = 152/159 (95.60%), Query Frame = 0 Query: 1 MLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCKDLKHVIYHRFKTGPVGKGPGCGFWAPGWRVWLYFLRGIVPLLERWLGNLLARQFE 159 MLNLLIHRKNLNYLHLDYNFNLKP KTLTTKERKKSRFGNAFHL REILRLTKL+VD+H+QYRL NVDA+QLADGLQY F+HVGQLTGMYRYKY+LMRQ+RMCKDLKH+IY+RF TGPVGKGPGCG WAPGWRVWL+F+RGI PLLERWLGNLL+RQFE Sbjct: 65 MLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDAHVQYRLNNVDAYQLADGLQYIFSHVGQLTGMYRYKYKLMRQVRMCKDLKHLIYYRFNTGPVGKGPGCGVWAPGWRVWLFFMRGITPLLERWLGNLLSRQFE 223 The following BLAST results are available for this feature:
BLAST of EWM26042.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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