rna4640, rna4640 (mRNA) Nannochloropsis gaditana

Overview
Namerna4640
Unique Namerna4640
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length312
Alignment locationCM002463.1:1124084..1125503 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101791g1.3270.mrna
Orig protein idgnl|cribi|Naga_101791g1.3270
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1124084..1125503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101791g1gene4477Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4640rna4640-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26045.1cds4628Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4640 ID=rna4640|Name=rna4640|organism=Nannochloropsis gaditana|type=mRNA|length=312bp
ATGTATGTGCATTTTACGACCGCGTTTTTTGTTGTGCTCCCTTTCATCTT
CCTTTCAACCCTGTGGAGCCACTCTTCTCTGGGTTTCCCACACAGCACCC
CAAAACTCTCTCAATCTCACGTTGCGATCCACTATTGCTCAGGGAGAAAG
ACTGTACCTGTTTCTGCTGACTGTTCGCCTATTCTTGCCTCAAGAAAAGG
CTTTGAGCATCCAGAAACCCGTGGTGCTTTCCTTCCTAGCCAATCATGCA
ACTCTTCATTCGGTCTAACAAGGCCACCTTCACGCTTAATGTCGCGCAGG
GTGCCACGGTAG
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protein sequence of rna4640

>rna4640-protein ID=rna4640-protein|Name=rna4640|organism=Nannochloropsis gaditana|type=polypeptide|length=138bp
SGPPRDGGPRPSPLPSHPLPLTRAGGQGGGCAGGGEDDRACPGARDPARP
TLYAFYGYRLRKGWRDGKSRGNSEVGREGGREGGREGRRVPGHGRTLLWY
RRPWYDWVIRVPPPDIYTQNVFAENSIKYIAYILFLCD
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mRNA from alignment at CM002463.1:1124084..1125503+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4640 ID=rna4640|Name=rna4640|organism=Nannochloropsis gaditana|type=mRNA|length=1420bp|location=Sequence derived from alignment at CM002463.1:1124084..1125503+ (Nannochloropsis gaditana)
TCAGGTCCTCCACGAGATGGAGGGCCTCggccttctcccctcccttcgca
ccctctccctcttacTCGCgcaggcggccaaggagggggatgtgcgggtg
gtggagaagatgATCGCGCTTGCCCGGGCGCGAGAGATCCCGCTCGACCG
ACGgtacctctctccctccctcccttcctccctttctcctctcccgtcTT
GCGCtttaccccccccctccttttctctttcttaccgccctctcatcctc
ctccctgaggCCCTTCGCTTCGTTTCACTTGCCCGAAGAAAGATCATCAT
CGgtggcctccttccctccctccctccctccctccctccctccctccctt
tgtctAGCTGTATGCTTTTTATGGCTACCGCCTACGAAAAGGCTGGCGAG
ATGGCAAAAGCAGAGGCAATtcggaggtagggagggagggagggagggag
ggagggagggagggaaggcgtgtGCCTGGGCACGGGAGGACACTCTTGTG
GTATCGCCGCCCGTGGTATGATTGGGTAATTCGAGTACCTCCTCCCGACA
TATACACGCAGAATGTATTTGCGGAAAATAGCATTAAATATATTGCATAT
ATATTATTTCTTTGTGACTGACGTTGTCGATCATATGCCCGGGTTTCAGA
CCATCAGTTGCATGGGGCGGTGTGGGAAATGGCTTGCCCCCTGCATGCAT
GAACGTGCCGACGTCGCGCCGTGTCCCAGAAGCGTATGGACGGTGATTGA
TGTTCTCATTGTTGCTTTCCACCCTACCAGGGAAGTGGAAGTCACAAGGC
AAGAGcagcggggggaaggaagggaggcaggaagggaggagggagggggg
gacagtcgggacaaggaaaaagggcagaggaaggaggagacggacggACC
ATagaaagctacccggaggggagggcgaggaggagggacgaggatgtAAG
GACACGATGTaatgggaagaggaaggaggaaggtacgTCGGAGGGAGCCG
TTTTTTCTGTGGGGGCGCCGACGCCGGAGATGATGGTTGCTAACCATCAG
GCAACTATCCAGCCTGGAGGGTGTCGCGGGCGGTTTCGACGAAGATGGCT
TACGAGCACATAGATACATGAATTCATCGCGGCAGTTTCGACGAACATGT
CTAACGAGCACATAGATACATATAGATACATAAATTTATCTATGGAAAGT
TCCCTTCGGGCGCCCGTGTGCAGCCCGGCGGCCGTCGCTGGCTGTCCGCT
GGGGATATatacatacatatatatatatatatatatgtgtgtgtgtgtgt
gtgtataCATATGCATGTATGTATAATATTCATATGCCCTGCAATTCTTC
TCCCGTACCCCCAACCAACACATAGAGTGTACACGAAAAGAAACAATGCC
ACCATGGCTTTGCGCCGAGA
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Coding sequence (CDS) from alignment at CM002463.1:1124084..1125503+

>rna4640 ID=rna4640|Name=rna4640|organism=Nannochloropsis gaditana|type=CDS|length=834bp|location=Sequence derived from alignment at CM002463.1:1124084..1125503+ (Nannochloropsis gaditana)
TCAGGTCCTCCACGAGATGGAGGGCCTCggccttctcccctcccttcgca
ccctctccctcttacTCGCgcaggcggccaaggagggggatgtgcgggtg
gtggagaagatgATCGCGCTTGCCCGGGCGCGAGAGATCCCGCTCGACCG
ACGCTGTATGCTTTTTATGGCTACCGCCTACGAAAAGGCTGGCGAGATGG
CAAAAGCAGAGGCAATtcggaggtagggagggagggagggagggagggag
ggagggagggaaggcgtgtGCCTGGGCACGGGAGGACACTCTTGTGGTAT
CGCCGCCCGTGGTATGATTGGGTAATTCGAGTACCTCCTCCCGACATATA
CACGCAGAATGTATTTGCGGAAAATAGCATTAAATATATTGCATATATAT
TATTTCTTTGTGACTGATCAGGTCCTCCACGAGATGGAGGGCCTCggcct
tctcccctcccttcgcaccctctccctcttacTCGCgcaggcggccaagg
agggggatgtgcgggtggtggagaagatgATCGCGCTTGCCCGGGCGCGA
GAGATCCCGCTCGACCGACGCTGTATGCTTTTTATGGCTACCGCCTACGA
AAAGGCTGGCGAGATGGCAAAAGCAGAGGCAATtcggaggtagggaggga
gggagggagggagggagggagggagggaaggcgtgtGCCTGGGCACGGGA
GGACACTCTTGTGGTATCGCCGCCCGTGGTATGATTGGGTAATTCGAGTA
CCTCCTCCCGACATATACACGCAGAATGTATTTGCGGAAAATAGCATTAA
ATATATTGCATATATATTATTTCTTTGTGACTGA
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Synonyms
Publications