rna463, rna463 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna463
Unique Name	rna463
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2202
Alignment location	CM002455.1:1158783..1161368 -

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Properties


Property Name	Value
Product	an1-type zinc finger protein 5
Orig transcript id	gnl\|cribi\|Naga_100003g14.1870.mrna
Orig protein id	gnl\|cribi\|Naga_100003g14.1870
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1158783..1161368 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g14	gene446	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30353.1	cds463	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna463	rna463-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1158783..1161368-
coding sequence from alignment at CM002455.1:1158783..1161368-

mRNA sequence

>rna463 ID=rna463|Name=rna463|organism=Nannochloropsis gaditana|type=mRNA|length=2202bp
AGCCGATGCCACGGCCGTCCCACGTGACAACCACCTGGGAGCGACCCCCG
CAATGAATGAAAACCCGGGGGGCACCTACGTGCTGGCCATGTGATGCAAG
GGCTTGGGATGCGTGTCTTGCGGGGTGGGACGGGCTTGGTGGCTGGCAGT
GGTTACCTTTCAACGCGCTGCACTTGAGGTGGACCGGGCTTGGCGTTTCG
AACGTCCCGGCAATGCCTTTCCTTGGCTCCTCTTGCCGCACACCACGCAC
AGGAATGGTTCCACACGGACGAGTTGTCGACACATGCATGCATTCTCCTA
CGCAAAGCCCTCTGGACGGGACGCGGCGGATGTGTAAGATGCGGGGTGCG
ATTTGACCACATGTTTTCGGGCGCCGGGTGCTTGGAGGTGGCGTTGCCAG
ACACCCAGTCCCCTTGCTGCCAATCGAGGGATGCCAGTCCGGCCTGTGCG
GCCTCTGCATGTTTCGGAGGATCCTGATCACGCAGAAAGGAATGAATTTT
GATTATCATAGGACACTGGGACATTCGTAAGGTTATGTTGTCCATTTTTC
CGACGGTGCCTGCCATGGAGGAAACAGCCGCGGCTCGTTTCTGTCCGCAG
GTCAGGCAACCAGTCCTCTTTCGCCACTATCACGTCGTCTATAATTGCTT
AAGCTATGTCTGACAACGGAAATACACAAGCCTGCGTCGATGACACTCGC
CCCTGCGTCAAGGGCTGTGGTTTTTATGGCTCTGCCCAGACGGGATATAT
GTGCTCGAAATGCTTCAAGGACACAGCAGGGGTCACACGTGCGTCCATTG
AAAGTGTCCCAGTATTGAGCGGCACCAGCAGCACCGCAATGCCGTTACTT
CCTCCCACTCTGTCCCATGCACTTTCGGAGGTGCGACAGGAGTCTACGCC
CTCGGCTGAGACGTCCTCTCCCTCGTCCACCCTCGGCCCCTCCAGCGCCA
CCCCCCCTGAAGTACCTGAGCACGAACAAGCATCTATTCCTCAAGCGATG
GAGGTGTCCGCGTCGGCGTCATCGCTAGACGTGCCAGCTGCTCTTGAAAC
GGCGAAAGTAGCCGCTCCCGTGGTACAGGCCACGCCTGCGGCTGTGGAGA
ATGCTGTCTCCCTCCCTGTCCAGGCATCACCCCTTCCGCAGAAGAAAAAG
AACCGTTGTGCGGTGTGTAACAAAAAAGTGGGGTTGACGGGTATTGAATG
TCGGTGTGAACTAGTTTTTTGTGGCGTGCATCGGTACCCGAGCCAACACT
CTTGCGCGTTCGACCATAAAGAGCACGATCGCCAGAATTTGAAGAGCACC
TTGACGGGGGGGGGACAATTTGCAAAGATGACGGATCAATTGTAATGAAG
ACTAGAAGAGTCACCGCGGGGAGTGGGGGGGAGGGAAGCAGGCAAGAGGA
AAGCGCTGGTGTAGGCGATGGAGTGGGGAGGCGGGAGGCAGAGAAGGAGC
CTATGTCTCCCTGTTCGTGTTCAAATTTTTGGACTAAAGCACGTCGAAAC
TACGAAAAGCTAAAAGGTGGGTCAGGCGTAGGAATCTTCATTCGGTTGTG
TTTTCTCACGTGGAGCAAGGCGAGCGATGGAGGAGGACTTTGAAGAGAGT
TGCCGCGGGTTGTACTTCCTCCAGGCGAGGATTGAACAAAGAAGAGGGAA
TGCGGCACGGCGGTTCATGCCAACACATTGTAAAGACGATTTTTAGTCTC
TCTGAAAGAGGAGGGCATGGCGTGGAGATCAGCCCCGCTTCGGCTAGGAG
TGTCGAGGGCCGGGGAGGATGAAATAAAGCTACTGTGGTGGCTAGCTGCT
CCTCGATGGTAGTTGCATGGTAATTTTCGCTGTTTCAATGTTGTCATGTC
CGCACGAAAAGAGAGGGGAGGGGACGGCTCGGCGCTGCGTCGCACCTGGA
CGTTGTCAGGAGAGGGGATGAAATAGCTTTGGACGTAACGTGGGTGTAGA
GGAAATCCTTGTCTCATGGCCAGTCCGAGACGTGGTCAAGCAGTTTCCAG
TGAGTTACTCAGAGTGAAGGCCGGAGAAGGAGGATCGCGAGGCTGTGTAC
ATACTGACGGCAACGAGGGAGCAGGCGGGAGCACGAGAGATAACTGGGAA
GAGGTTAGTTTATTACGGCACGAAAAGAAAGAATGGAGAGACAAAATACT
GGCGTCGGGCGGGTTTTCTTCATGAAGACATCATATCAGTTGCAAGCTTT
CG

protein sequence of rna463

>rna463-protein ID=rna463-protein|Name=rna463|organism=Nannochloropsis gaditana|type=polypeptide|length=229bp
MSDNGNTQACVDDTRPCVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIES
VPVLSGTSSTAMPLLPPTLSHALSEVRQESTPSAETSSPSSTLGPSSATP
PEVPEHEQASIPQAMEVSASASSLDVPAALETAKVAAPVVQATPAAVENA
VSLPVQASPLPQKKKNRCAVCNKKVGLTGIECRCELVFCGVHRYPSQHSC
AFDHKEHDRQNLKSTLTGGGQFAKMTDQL

mRNA from alignment at CM002455.1:1158783..1161368-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna463 ID=rna463|Name=rna463|organism=Nannochloropsis gaditana|type=mRNA|length=2586bp|location=Sequence derived from alignment at CM002455.1:1158783..1161368- (Nannochloropsis gaditana)
AGCCGATGCCACGGCCGTCCCACGTGACAACCACCTGGGAGCGACCCCCG
CAATGAATGAAAACCCGGGGGGCACCTACGTGCTGGCCATGTGATGCAAG
GGCTTGGGATGCGTGTCTTGCGGGGTGGGACGGGCTTGGTGGCTGGCAGT
GGTTACCTTTCAACGCGCTGCACTTGAGGTGGACCGGGCTTGGCGTTTCG
AACGTCCCGGCAATGCCTTTCCTTGGCTCCTCTTGCCGCACACCACGCAC
AGGAATGGTTCCACACGGACGAGTTGTCGACACATGCATGCATTCTCCTA
CGCAAAGCCCTCTGGACGGGACGCGGCGGATGTGTAAGATGCGGGGTGCG
ATTTGACCACATGTTTTCGGGCGCCGGGTGCTTGGAGGTGGCGTTGCCAG
ACACCCAGTCCCCTTGCTGCCAATCGAGGGATGCCAGTCCGGCCTGTGCG
GCCTCTGCATGTTTCGGAGGATCCTGATCACGCAGAAAGGAATGAATTTT
GATTATCATAGGACACTGGGACATTCGTAAGGTTATGTTGTCCATTTTTC
CGACGGTGCCTGCCATGGAGGAAACAGCCGCGGCTCGTTTCTGTCCGCAG
GTCAGGTGCGCGCCTTGGACTCCAATGTGCGCAAGACGAATTGAATGCTT
CTTGCATTGGAATTTAGGGGGTGTGTGACTTTACGAAGTGGCTCTGAAGC
CGAAAGGAAGTGGGTGACGGTCCGCGGAGGACAGGATATCGTACGCGAAG
GATGTCGACACCTTACAGCGAGGCGCATGTCCTTATGACCTTCTGCTTTG
TGCGACGCAGACATTTTGAACGCATGCCAATTGCTGTAATCCCTTGACAA
GGGTCTTTGCGTGGTTGACCAGGTGATATTCAAGCCTCACAGAAGGCGGT
GGAGTGTTACATTCGAGGCCTGAAAAAGATCATGAAGCTGCGAACGGATT
CCTGAGCTTTCTCTCTTTTCCATTTTATCCCTGGCACAGGCAACCAGTCC
TCTTTCGCCACTATCACGTCGTCTATAATTGCTTAAGCTATGTCTGACAA
CGGAAATACACAAGCCTGCGTCGATGACACTCGCCCCTGCGTCAAGGGCT
GTGGTTTTTATGGCTCTGCCCAGACGGGATATATGTGCTCGAAATGCTTC
AAGGACACAGCAGGGGTCACACGTGCGTCCATTGAAAGTGTCCCAGTATT
GAGCGGCACCAGCAGCACCGCAATGCCGTTACTTCCTCCCACTCTGTCCC
ATGCACTTTCGGAGGTGCGACAGGAGTCTACGCCCTCGGCTGAGACGTCC
TCTCCCTCGTCCACCCTCGGCCCCTCCAGCGCCACCCCCCCTGAAGTACC
TGAGCACGAACAAGCATCTATTCCTCAAGCGATGGAGGTGTCCGCGTCGG
CGTCATCGCTAGACGTGCCAGCTGCTCTTGAAACGGCGAAAGTAGCCGCT
CCCGTGGTACAGGCCACGCCTGCGGCTGTGGAGAATGCTGTCTCCCTCCC
TGTCCAGGCATCACCCCTTCCGCAGAAGAAAAAGAACCGTTGTGCGGTGT
GTAACAAAAAAGTGGGGTTGACGGGTATTGAATGTCGGTGTGAACTAGTT
TTTTGTGGCGTGCATCGGTACCCGAGCCAACACTCTTGCGCGTTCGACCA
TAAAGAGCACGATCGCCAGAATTTGAAGAGCACCTTGACGGGGGGGGGAC
AATTTGCAAAGATGACGGATCAATTGTAATGAAGACTAGAAGAGTCACCG
CGGGGAGTGGGGGGGAGGGAAGCAGGCAAGAGGAAAGCGCTGGTGTAGGC
GATGGAGTGGGGAGGCGGGAGGCAGAGAAGGAGCCTATGTCTCCCTGTTC
GTGTTCAAATTTTTGGACTAAAGCACGTCGAAACTACGAAAAGCTAAAAG
GTGGGTCAGGCGTAGGAATCTTCATTCGGTTGTGTTTTCTCACGTGGAGC
AAGGCGAGCGATGGAGGAGGACTTTGAAGAGAGTTGCCGCGGGTTGTACT
TCCTCCAGGCGAGGATTGAACAAAGAAGAGGGAATGCGGCACGGCGGTTC
ATGCCAACACATTGTAAAGACGATTTTTAGTCTCTCTGAAAGAGGAGGGC
ATGGCGTGGAGATCAGCCCCGCTTCGGCTAGGAGTGTCGAGGGCCGGGGA
GGATGAAATAAAGCTACTGTGGTGGCTAGCTGCTCCTCGATGGTAGTTGC
ATGGTAATTTTCGCTGTTTCAATGTTGTCATGTCCGCACGAAAAGAGAGG
GGAGGGGACGGCTCGGCGCTGCGTCGCACCTGGACGTTGTCAGGAGAGGG
GATGAAATAGCTTTGGACGTAACGTGGGTGTAGAGGAAATCCTTGTCTCA
TGGCCAGTCCGAGACGTGGTCAAGCAGTTTCCAGTGAGTTACTCAGAGTG
AAGGCCGGAGAAGGAGGATCGCGAGGCTGTGTACATACTGACGGCAACGA
GGGAGCAGGCGGGAGCACGAGAGATAACTGGGAAGAGGTTAGTTTATTAC
GGCACGAAAAGAAAGAATGGAGAGACAAAATACTGGCGTCGGGCGGGTTT
TCTTCATGAAGACATCATATCAGTTGCAAGCTTTCG

Coding sequence (CDS) from alignment at CM002455.1:1158783..1161368-

>rna463 ID=rna463|Name=rna463|organism=Nannochloropsis gaditana|type=CDS|length=690bp|location=Sequence derived from alignment at CM002455.1:1158783..1161368- (Nannochloropsis gaditana)
ATGTCTGACAACGGAAATACACAAGCCTGCGTCGATGACACTCGCCCCTG
CGTCAAGGGCTGTGGTTTTTATGGCTCTGCCCAGACGGGATATATGTGCT
CGAAATGCTTCAAGGACACAGCAGGGGTCACACGTGCGTCCATTGAAAGT
GTCCCAGTATTGAGCGGCACCAGCAGCACCGCAATGCCGTTACTTCCTCC
CACTCTGTCCCATGCACTTTCGGAGGTGCGACAGGAGTCTACGCCCTCGG
CTGAGACGTCCTCTCCCTCGTCCACCCTCGGCCCCTCCAGCGCCACCCCC
CCTGAAGTACCTGAGCACGAACAAGCATCTATTCCTCAAGCGATGGAGGT
GTCCGCGTCGGCGTCATCGCTAGACGTGCCAGCTGCTCTTGAAACGGCGA
AAGTAGCCGCTCCCGTGGTACAGGCCACGCCTGCGGCTGTGGAGAATGCT
GTCTCCCTCCCTGTCCAGGCATCACCCCTTCCGCAGAAGAAAAAGAACCG
TTGTGCGGTGTGTAACAAAAAAGTGGGGTTGACGGGTATTGAATGTCGGT
GTGAACTAGTTTTTTGTGGCGTGCATCGGTACCCGAGCCAACACTCTTGC
GCGTTCGACCATAAAGAGCACGATCGCCAGAATTTGAAGAGCACCTTGAC
GGGGGGGGGACAATTTGCAAAGATGACGGATCAATTGTAA

Synonyms

Publications