EWM30353.1, cds463 (CDS) Nannochloropsis gaditana

Overview
NameEWM30353.1
Unique Namecds463
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1159640..1160329 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30353.1
Productan1-type zinc finger protein 5
Orig transcript idgnl|cribi|Naga_100003g14.1870.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1159640..1160329 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR000058Znf_AN1
IPR002653Znf_A20
Homology
BLAST of EWM30353.1 vs. NCBI_GenBank
Match: gi|585113012|gb|EWM30353.1| (an1-type zinc finger protein 5 [Nannochloropsis gaditana] >gi|585113013|gb|EWM30354.1| an1-type zinc finger protein 5 [Nannochloropsis gaditana])

HSP 1 Score: 467.618 bits (1202), Expect = 1.074e-166
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0
Query:    1 MSDNGNTQACVDDTRPCVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIESVPVLSGTSSTAMPLLPPTLSHALSEVRQESTPSAETSSPSSTLGPSSATPPEVPEHEQASIPQAMEVSASASSLDVPAALETAKVAAPVVQATPAAVENAVSLPVQASPLPQKKKNRCAVCNKKVGLTGIECRCELVFCGVHRYPSQHSCAFDHKEHDRQNLKSTLTGGGQFAKMTDQL 229
            MSDNGNTQACVDDTRPCVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIESVPVLSGTSSTAMPLLPPTLSHALSEVRQESTPSAETSSPSSTLGPSSATPPEVPEHEQASIPQAMEVSASASSLDVPAALETAKVAAPVVQATPAAVENAVSLPVQASPLPQKKKNRCAVCNKKVGLTGIECRCELVFCGVHRYPSQHSCAFDHKEHDRQNLKSTLTGGGQFAKMTDQL
Sbjct:    1 MSDNGNTQACVDDTRPCVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIESVPVLSGTSSTAMPLLPPTLSHALSEVRQESTPSAETSSPSSTLGPSSATPPEVPEHEQASIPQAMEVSASASSLDVPAALETAKVAAPVVQATPAAVENAVSLPVQASPLPQKKKNRCAVCNKKVGLTGIECRCELVFCGVHRYPSQHSCAFDHKEHDRQNLKSTLTGGGQFAKMTDQL 229          
BLAST of EWM30353.1 vs. NCBI_GenBank
Match: gi|1041099889|ref|XP_017272805.1| (PREDICTED: AN1-type zinc finger protein 5 [Kryptolebias marmoratus])

HSP 1 Score: 103.219 bits (256), Expect = 1.342e-23
Identity = 69/190 (36.32%), Postives = 99/190 (52.11%), Query Frame = 0
Query:   17 CVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIESVPVLSGTSSTAMPLLPPTLSHALSEVRQESTPSAETSSPSSTLGPSSATPPEVPEHEQASIPQAMEVS-ASASSLDVPAALETAKVAAPVVQATPAAVENAVSLPVQASPLPQKKKNRCAVCNKKVGLTGIECRCELVFCGVHRYPSQHSCAFDHK 205
            C  GCGFYG+ +T  MCS C+K+     ++S    P LS   STA P      S A +  R E++ +   +SP+S+        P++    Q S+P   +++  S S  D P  LE           TP A   + S     S  P+ KKNRC +C K+VGLTG +CRC  +FCG+HRY  +H+C +D+K
Sbjct:   14 CATGCGFYGNPRTNGMCSVCYKEHLTRQQSSDRMSP-LSPMGSTASPT-----SEASAIQRLEASLAKVDASPASS--------PDMSRTVQGSLPVTQQMTEMSISREDKPEPLEPVVNQPAASSPTPVA---SSSTEESKSDTPKPKKNRCFMCRKRVGLTGFDCRCGNLFCGIHRYSDKHNCPYDYK 186          
BLAST of EWM30353.1 vs. NCBI_GenBank
Match: gi|926625624|ref|XP_013778320.1| (PREDICTED: AN1-type zinc finger protein 6-like [Limulus polyphemus])

HSP 1 Score: 102.834 bits (255), Expect = 1.441e-23
Identity = 68/199 (34.17%), Postives = 99/199 (49.75%), Query Frame = 0
Query:   17 CVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIESVPVLSGTSSTAMPLLPPTLSHALSEVRQESTPSAETSSPSSTLGPSSATPPEVPEHEQASIPQAMEVSAS-ASSLDVPAALETAKVAAPVVQATPAAVENAVSLPVQASPLP-QKKKNRCAVCNKKVGLTGIECRCELVFCGVHRYPSQHSCAFDHKEHDRQNLK 213
            C  GCGFYGS  +  +CS+C+K+   V R   +S P  SG +    P  P T S  L         +A  SS  S L  +S T           +P A+  S    SS   P    +  + +     +     +  +   +++P   +KKKNRC +C KKVGLTG ECRC  +FC VHRY ++H+C+FD+K+H  Q ++
Sbjct:   14 CRSGCGFYGSPASDGLCSQCYKEQ--VRRK--QSTPPSSGVTGLVSPTTPETSSEGLV--------AAAISSAESMLNTASPT-----------VPSAITTSPDPESSFSEPQPSGSQDIGSEETSVSSDTFVSDTAQSEESTPKDHKKKKNRCQLCRKKVGLTGFECRCGGLFCSVHRYVNEHNCSFDYKQHGAQEIR 189          
BLAST of EWM30353.1 vs. NCBI_GenBank
Match: gi|1072262941|ref|XP_018416864.1| (PREDICTED: AN1-type zinc finger protein 6 [Nanorana parkeri])

HSP 1 Score: 102.834 bits (255), Expect = 1.649e-23
Identity = 70/191 (36.65%), Postives = 92/191 (48.17%), Query Frame = 0
Query:   17 CVKGCGFYGSAQTGYMCSKCFKDTAGVTRAS--IESVPVLSGTSSTAMPLLPPTLSHALSEVRQESTPSAETSSPSSTLGPSSATPPEVPEHEQASIPQAMEVSASASSLDVPAALETAKVAAPVVQATPAAVENAVSLPVQASPLPQKKKNRCAVCNKKVGLTGIECRCELVFCGVHRYPSQHSCAFDHK 205
            C  GCGFYG+ +T  +CS C+K+      +S    S PVLS  S   +P L  T++  +SE  +   P A+ SS                      +P    VS+S +        ET    A    +   + E   S PV+A    + KKNRC +C KKVGLTG ECRC  VFCG HRY   HSC+FD+K
Sbjct:   16 CSNGCGFYGNPRTNGLCSVCYKEHLQRQNSSGGRSSPPVLSMGSGVEVPSLQQTVAPPVSEPEESVLPQAQASS----------------------LPLPESVSSSPAETTEDRTSETKDPPASPSDSAQNSSEEQASSPVKA----KLKKNRCNMCRKKVGLTGFECRCGNVFCGTHRYSDVHSCSFDYK 180          
BLAST of EWM30353.1 vs. NCBI_GenBank
Match: gi|928081265|ref|XP_013855454.1| (PREDICTED: AN1-type zinc finger protein 5-like [Austrofundulus limnaeus])

HSP 1 Score: 102.834 bits (255), Expect = 2.095e-23
Identity = 71/191 (37.17%), Postives = 106/191 (55.50%), Query Frame = 0
Query:   17 CVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIESVPVLSGTSSTAMPLLPPTLSHALSEVRQESTPSAETSSPSSTLGPSSATPPEVPEHEQASIPQAMEVS-ASASSLDVPAALETAKVAAPVVQATPAAVENAVSLPVQA-SPLPQKKKNRCAVCNKKVGLTGIECRCELVFCGVHRYPSQHSCAFDHK 205
            C  GCGFYG+ +T  MCS C+K+     ++S    P LS   STA P      S A +  R E++ +   +SP+S+        P++    Q S+P   +++  S S  D P  LE   ++ P   ++P  V  A S P ++ S  P+ KKNRC +C K+VGLTG +CRC  +FCG+HRY  +H+C +D+K
Sbjct:   14 CAMGCGFYGNPRTNGMCSVCYKEHLTRQQSSDRMSP-LSPMGSTASPT-----SEASAIQRLEASLAKVDASPASS--------PDMSRTVQGSLPVTQQMTEMSISRDDKPEPLEPV-ISQPAA-SSPTPV--ASSSPEESKSDTPKPKKNRCFMCRKRVGLTGFDCRCGNLFCGIHRYSDKHNCPYDYK 186          
BLAST of EWM30353.1 vs. NCBI_GenBank
Match: gi|686730525|ref|XP_009242794.1| (PREDICTED: LOW QUALITY PROTEIN: AN1-type zinc finger protein 5 [Pongo abelii])

HSP 1 Score: 102.834 bits (255), Expect = 2.545e-23
Identity = 64/191 (33.51%), Postives = 104/191 (54.45%), Query Frame = 0
Query:   17 CVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIESVPVLSGTSSTAMPLLPPTLSHALSEVRQESTPSAETSSPSSTLGPSSATPPEVPEHEQASIPQAMEVSASASSLDVPAALETAKVAAPVV-QATPAAVENAVSLPVQASP-LPQKKKNRCAVCNKKVGLTGIECRCELVFCGVHRYPSQHSCAFDHK 205
            C  GCGFYG+ +T  MCS C+K+     + S      +S      +P  P + S +++E R  +  + + ++     G +S     VP    A++P   +++  + S +        +V+ PVV Q +P+  + + S   + +P LPQ KKNRC +C KKVGLTG +CRC  +FCG+HRY  +H+C +D+K
Sbjct:   14 CSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGR----MSPNGXLVVPNSPTSDSASVTESRHXAXTTVKGAA-----GSTSEKSRNVP---VAALPVTQQMTEMSISREDKITTPKTEVSEPVVTQPSPSVSQPSTSQSEEKAPELPQPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYK 192          
BLAST of EWM30353.1 vs. NCBI_GenBank
Match: gi|657548236|ref|XP_008279049.1| (PREDICTED: AN1-type zinc finger protein 5 isoform X2 [Stegastes partitus] >gi|657548239|ref|XP_008279050.1| PREDICTED: AN1-type zinc finger protein 5 isoform X2 [Stegastes partitus])

HSP 1 Score: 101.679 bits (252), Expect = 5.159e-23
Identity = 70/194 (36.08%), Postives = 104/194 (53.61%), Query Frame = 0
Query:   17 CVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIESVPVLSGTSSTAMPLLPPTLSHALSEVRQESTPSAETSSPSSTLGPSSATPPEVPEHEQASIPQAMEVS-ASASSLDVPAALETAKVAAPVVQ----ATPAAVENAVSLPVQASPLPQKKKNRCAVCNKKVGLTGIECRCELVFCGVHRYPSQHSCAFDHK 205
            C  GCGFYG+ +T  MCS C+K+     ++S    P LS   STA P      S A +  R E++ +   +SP+S+        P++    Q S+P   +++  S S  D P  LE      PVV     ++P  V ++ S   +    P+ KKNRC +C K+VGLTG +CRC  +FCG+HRY  +H+C +D+K
Sbjct:   14 CATGCGFYGNPRTNGMCSVCYKEHLTRQQSSDRMSP-LSPMGSTASPT-----SEASAIQRLEASLAKVDASPASS--------PDMSRTIQGSLPVTQQMTEMSISREDKPEPLE------PVVNQPAASSPTPVASSSSEEGKGD-TPKPKKNRCFMCRKRVGLTGFDCRCGNLFCGIHRYSDKHNCPYDYK 186          
BLAST of EWM30353.1 vs. NCBI_GenBank
Match: gi|657548233|ref|XP_008279048.1| (PREDICTED: AN1-type zinc finger protein 5 isoform X1 [Stegastes partitus])

HSP 1 Score: 101.293 bits (251), Expect = 8.585e-23
Identity = 70/194 (36.08%), Postives = 104/194 (53.61%), Query Frame = 0
Query:   17 CVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIESVPVLSGTSSTAMPLLPPTLSHALSEVRQESTPSAETSSPSSTLGPSSATPPEVPEHEQASIPQAMEVS-ASASSLDVPAALETAKVAAPVVQ----ATPAAVENAVSLPVQASPLPQKKKNRCAVCNKKVGLTGIECRCELVFCGVHRYPSQHSCAFDHK 205
            C  GCGFYG+ +T  MCS C+K+     ++S    P LS   STA P      S A +  R E++ +   +SP+S+        P++    Q S+P   +++  S S  D P  LE      PVV     ++P  V ++ S   +    P+ KKNRC +C K+VGLTG +CRC  +FCG+HRY  +H+C +D+K
Sbjct:   25 CATGCGFYGNPRTNGMCSVCYKEHLTRQQSSDRMSP-LSPMGSTASPT-----SEASAIQRLEASLAKVDASPASS--------PDMSRTIQGSLPVTQQMTEMSISREDKPEPLE------PVVNQPAASSPTPVASSSSEEGKGD-TPKPKKNRCFMCRKRVGLTGFDCRCGNLFCGIHRYSDKHNCPYDYK 197          
BLAST of EWM30353.1 vs. NCBI_GenBank
Match: gi|1201909235|ref|XP_021235573.1| (AN1-type zinc finger protein 5 [Numida meleagris] >gi|1201909237|ref|XP_021235574.1| AN1-type zinc finger protein 5 [Numida meleagris] >gi|1201909239|ref|XP_021235575.1| AN1-type zinc finger protein 5 [Numida meleagris])

HSP 1 Score: 100.908 bits (250), Expect = 1.036e-22
Identity = 70/193 (36.27%), Postives = 102/193 (52.85%), Query Frame = 0
Query:   17 CVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIESVPVLSGTSSTAMPLLPPTLSHALSEVRQESTPSAETSSPSSTLGPSSATPPEVPEHEQASIP---QAMEVSASASSLDVPAALETAKVAAPVVQATPAAVENAVSLPVQASP-LPQKKKNRCAVCNKKVGLTGIECRCELVFCGVHRYPSQHSCAFDHK 205
            C  GCGFYG+ +T  MCS C+K+     + S    P+   + S +     PT   A       S   A+T+S ++  G + +TP +      A++P   Q  E+S S      P   ET  V   V Q TP+  + + S   + +P LP+ KKNRC +C KKVGLTG +CRC  +FCG+HRY  +H+C +D+K
Sbjct:   14 CSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRISPMGPASGSNS-----PTSDSA-------SVQRADTASLNNCDGVAGSTPEKSRNVPVAALPVTQQMTEMSISREEKVTPKT-ETEPV---VTQPTPSVSQPSTSQNEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYK 190          
BLAST of EWM30353.1 vs. NCBI_GenBank
Match: gi|731247438|ref|XP_010636751.1| (PREDICTED: AN1-type zinc finger protein 5 [Fukomys damarensis] >gi|731247440|ref|XP_010636752.1| PREDICTED: AN1-type zinc finger protein 5 [Fukomys damarensis] >gi|676272326|gb|KFO27196.1| AN1-type zinc finger protein 5 [Fukomys damarensis])

HSP 1 Score: 100.908 bits (250), Expect = 1.269e-22
Identity = 65/191 (34.03%), Postives = 102/191 (53.40%), Query Frame = 0
Query:   17 CVKGCGFYGSAQTGYMCSKCFKDTAGVTRASIESVPVLSGTSSTAMPLLPPTLSHALSEVRQESTPSAETSSPSSTLGPSSATPPEVPEHEQASIPQAMEVSASASSLDVPAALETAKVAAPVV-QATPAAVENAVSLPVQASP-LPQKKKNRCAVCNKKVGLTGIECRCELVFCGVHRYPSQHSCAFDHK 205
            C  GCGFYG+ +T  MCS C+K+     + S    P+ + + S +     PT   A  +    S  + E ++     G +S     VP    A++P   +++  + S D        +V+ PVV Q +P+  + + S   + +P LP+ KKNRC +C KKVGLTG +CRC  +FCG+HRY  +H+C +D+K
Sbjct:   14 CSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNS-----PTSDSASVQRADTSLNNCEGAA-----GSTSEKSRNVP---VAALPVTQQMTEMSISRDDKITTPKTEVSEPVVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYK 191          
The following BLAST results are available for this feature:
BLAST of EWM30353.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113012|gb|EWM30353.1|1.074e-166100.00an1-type zinc finger protein 5 [Nannochloropsis ga... [more]
gi|1041099889|ref|XP_017272805.1|1.342e-2336.32PREDICTED: AN1-type zinc finger protein 5 [Kryptol... [more]
gi|926625624|ref|XP_013778320.1|1.441e-2334.17PREDICTED: AN1-type zinc finger protein 6-like [Li... [more]
gi|1072262941|ref|XP_018416864.1|1.649e-2336.65PREDICTED: AN1-type zinc finger protein 6 [Nanoran... [more]
gi|928081265|ref|XP_013855454.1|2.095e-2337.17PREDICTED: AN1-type zinc finger protein 5-like [Au... [more]
gi|686730525|ref|XP_009242794.1|2.545e-2333.51PREDICTED: LOW QUALITY PROTEIN: AN1-type zinc fing... [more]
gi|657548236|ref|XP_008279049.1|5.159e-2336.08PREDICTED: AN1-type zinc finger protein 5 isoform ... [more]
gi|657548233|ref|XP_008279048.1|8.585e-2336.08PREDICTED: AN1-type zinc finger protein 5 isoform ... [more]
gi|1201909235|ref|XP_021235573.1|1.036e-2236.27AN1-type zinc finger protein 5 [Numida meleagris] ... [more]
gi|731247438|ref|XP_010636751.1|1.269e-2234.03PREDICTED: AN1-type zinc finger protein 5 [Fukomys... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna463rna463Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications