rna4620, rna4620 (mRNA) Nannochloropsis gaditana

Overview
Namerna4620
Unique Namerna4620
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length420
Alignment locationCM002463.1:1076305..1077237 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102077g1.10362.mrna
Orig protein idgnl|cribi|Naga_102077g1.10362
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1076305..1077237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102077g1gene4456Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26065.1cds4608Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4620rna4620-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4620 ID=rna4620|Name=rna4620|organism=Nannochloropsis gaditana|type=mRNA|length=420bp
ATGCTGCGCTGGTGTGATGAACAGGGTTGGAAACTAAGTCCTGGACAAGG
CATTACCGCATGCTTCTCCCAGTCTATATTTGGCTTGGGTCCTGTACTAT
TTTTTGCCGTCGCCGGACTGTATCAATACGTCCTTTTTTCAAGGGAGGAC
GAGGCTGCAAGTCGGAGACCGTTCCACGACAAACGCCTGAAAGACAAGAC
GAAGACTGTCAAGCTGCTTCTATCGGTCCTGCTAGTCTCGATCCCTTTGG
CGCGTGTCCTGGTGGCAGTTGGCACGCAGAGCCATGGCTTGTACTCCGTT
GCTTTCTTCTTCAGCAATGTCGTCACCTCGATGGCATGGTGTGGTTGTTT
AGGTGTCCTGTCTCTCCCGGGATCACCAGACGTCATCCCTCGCCAGTCCT
GTGGAGCCTGGGGGTCTTAA
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protein sequence of rna4620

>rna4620-protein ID=rna4620-protein|Name=rna4620|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
HFPFPSPLPPFLPPSLHSRHINRRGATIGSHLPPSLLPSLLLPSPPLLRF
LLPSHSCLPSSPPSSPPPPPLLPPPPPPPPPPPPPPPSPPPRPRPRETAR
ADPVIEDTLRNAIHFSCLWELV
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mRNA from alignment at CM002463.1:1076305..1077237-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4620 ID=rna4620|Name=rna4620|organism=Nannochloropsis gaditana|type=mRNA|length=933bp|location=Sequence derived from alignment at CM002463.1:1076305..1077237- (Nannochloropsis gaditana)
CACTTTCCTTTTCCTTCCCCCCTCCCTCCCTTCCTCCCTCCCTCTCTCCA
TTCTCGTCACATAAACCGCAGGGGTGCGACTATCGGATCGCACCTCCCTC
CCTCCCTCCTTCCCTCCCTCCTTCTTCCCTCCCCTCCCCTCCTTCGCTTC
CTTCTTCCCTCTCATTCATGTCTTCCTTCTTCACCTCCCTCATCACCACC
ACCTCCTCCTCTTCTTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCTCCCC
CCCCTCCTCCCTCCCCTCCTCCCCGCCCTCGCCCTCGTGAGACCGCGCGG
GCCGACCCCGTCATAGAAGATACCTTAAGAAATGCGATCCATTTTTCCTG
CCTCTGGGAATTGGTTTGATTGTGAAGGAAGGGACATGGGGAACGCTTTG
ATTGTAAAGGGAGGGAGGTTACGGCAGAATATGATAACAAGAGAGTTTTG
GAAGGCGATCGCCTTAATCGTAATGGCAATTTTGGGTTCATCGCATGCTT
TTGTACAGGGAAGTTGTGACTTTGGCTCCAATCTGTGAAAGGAAGGAGGG
AAGGAGGAAGGGAAGGAGGGAAGGAAGGAGGGAAGCGATGGCGGTCGGGG
CGAGACAGAGATTTTCTTGTCAATTAGAATATGTCATGGAATGAAAGGAG
GGGGAAGGTGGGCAGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGGAGATAAAGGATTGGCCTTGCTCCGATTTTGACGTGCTGT
ATCTTACGAGAAAGAATGTCACAAAATGAAATGAATCTTTAAGGATTCTT
GCGTGGTACCGCAGTCGTTTGAGTTCGGTAACGGCGATGTTTCTGATCAC
GTTCCTTGCCAAGAAGCGGAGGAAGGGAGGAAGGATGATGGGGAGGGAAG
GGGAGGAGGTTCTGGGAAGGGAGGAGATGAGGA
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Coding sequence (CDS) from alignment at CM002463.1:1076305..1077237-

>rna4620 ID=rna4620|Name=rna4620|organism=Nannochloropsis gaditana|type=CDS|length=369bp|location=Sequence derived from alignment at CM002463.1:1076305..1077237- (Nannochloropsis gaditana)
CACTTTCCTTTTCCTTCCCCCCTCCCTCCCTTCCTCCCTCCCTCTCTCCA
TTCTCGTCACATAAACCGCAGGGGTGCGACTATCGGATCGCACCTCCCTC
CCTCCCTCCTTCCCTCCCTCCTTCTTCCCTCCCCTCCCCTCCTTCGCTTC
CTTCTTCCCTCTCATTCATGTCTTCCTTCTTCACCTCCCTCATCACCACC
ACCTCCTCCTCTTCTTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCTCCCC
CCCCTCCTCCCTCCCCTCCTCCCCGCCCTCGCCCTCGTGAGACCGCGCGG
GCCGACCCCGTCATAGAAGATACCTTAAGAAATGCGATCCATTTTTCCTG
CCTCTGGGAATTGGTTTGA
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Synonyms
Publications