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Properties
| Property Name | Value |
|---|
| Product | Transcription elongation factor S-II, central domain protein |
| Orig transcript id | gnl|cribi|Naga_101239g1.2660.mrna |
| Orig protein id | gnl|cribi|Naga_101239g1.2660 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:1029356..1032409 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4608 ID=rna4608|Name=rna4608|organism=Nannochloropsis gaditana|type=mRNA|length=318bp
ATGGAGAATGCTACGCTAGAATCCGGCAGAAAAGGTCAGCAGCAGCATGA
ATCGCAGCAAATAGATGAACAACGACAGCCACGCCGATCGAGTCGCGGAG
GCGCGAGGACAAAAAGAGGATTAAAAACGCGCCGTCCTGTAGACGCTCTG
TGGGTGAGAGCCTTGACCGCCCTTCCTACAGAAGAAGAAGGACAAGGACG
TTGGCGCTTTGCCTTCACACAGCAAACACCATGTGAATTATGCGATGACA
GTGGAGGATTGGTGGTTCAATGTGCCAAAAGCGGTAAAGTACCGGAAGCG
GGTCCTTCAAGGGTTTGA back to topprotein sequence of rna4608 >rna4608-protein ID=rna4608-protein|Name=rna4608|organism=Nannochloropsis gaditana|type=polypeptide|length=545bp
MTWRRPSLCSSLCGNPPSPPSLPPPRPSPGADREEREGGGREGGGSRERM
RSALRETFEQGLGRLLDGERKEGGKEGGREGGVDRGRVNRALSAVLAWEL
ERELRDFATREGGKEGGKAGGKGVGGREQRRRESLRKKYASIKYNLDKPD
NPYLLHRILSGDLSMEALCLLSPQELAATDQEAEASRLTAAKKALLVDVH
MFPLPVGEGGGQEGVTERKRKRGSLGEVEDRGEDEARAGEARRAGRTKKR
KPTPSPTGPPRELLQLPHPPSSPSSSSAAAALPVFPPAAIAQTGASALKP
SAAPSSTSGGLGEGDTERKGGTVPPFFLPVCPHAPLVPSPVGLDEVGREE
GREGGREEGRTFYTLEQPSSGGEGKGTFLYLQAWTLAHARTALAESLKRG
ALVVKGRTKIADLNSYLRQCQSSPRFQVLPLLLTDAAPSFPACPPPSALL
PRGFFPSSPDENSLAFTALVQALVAGKKAAYIGLGFSFSPSAPKEGGKEG
GKEGGREGGADTLHIYMVPQALLRECPAARACSDLEGGKEGGKEG back to topmRNA from alignment at CM002463.1:1029356..1032409+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4608 ID=rna4608|Name=rna4608|organism=Nannochloropsis gaditana|type=mRNA|length=3054bp|location=Sequence derived from alignment at CM002463.1:1029356..1032409+ (Nannochloropsis gaditana)
ggacaaccAGGAGACTCTTCACGgactcatctccctcccccccagggCTC
GTCCTGCGTTATGCTCCAGCAGGCTCTCCGGCTCCACGCCCGCATGACCC
AACGCCTTCAACATGCGCGGAATTGGATCAGGTAGGCGTGCGAGTGGCTG
CCATCccgctctctttcccctgcaCTCGAGGCGGTCTTGCGTCTTTCCTG
TGCctgtctcctgcctcccatctccgcccccaccctcacccctcctctcc
ttccctctgcgggggcggcggcttcCGCTCGCAGTACCCTCAAGGCCTGG
CAGGCGgatcccgccttctccctgcctcccgccctcctcccctccctccg
gcagCAGCTGGATGCAGCCGGCGTCTGCAtccgggaggagaagctgacAG
GACTGACAAGGCccggagaagggaaggagggggcgagggagacggtggca
gggctgggagggggaaagcaggcGAGTTTGGGGGCGAAGCGGAAGCAAgt
cggggcggggaagaaggctcGACGAGGAGGTCTCGGCTGTCTCGGACCCG
GATGctcccgcgccccctccccctccgcacgccctgcctccctccttccc
tcccagtaCTGCTCCGCCCGCTGCATGGTCCTgtcggcgccctccctcct
tcagaccctcctctccctccgtcaagccttcctcctctcagtATACGCCC
CCGgttcccgtcctccactcGTGTCCcaagtccctccctccctccctccc
tcccgccctccctgccgccctccctgccacacCTACCACCTTGAGGTCTG
CCGGTGCCCAACTGGCAGCTGGGAGTATGACCTGgcgtcgcccctccctc
tgctcgTCCCTGTGCGGGaatcccccctctcctccttccctccctccccc
ccgcccttccccaggcgccgacagggaggagagggaaggtggagggaggg
aaggagggggatcgagggagaggatgcgaAGCGCACTGCGTGAGACCTTC
GAGCAGGGCCTGGGCCGCCTGCTCGacggggaaagaaaggaaggagggaa
ggaaggagggagggaaggaggggtggacaGAGGACGGGTGAACCGGGCGC
TGAGTGCCGTCCTGGCGTGGGAGCTGGAACGGGAGTTGCGGGACTTCGCG
acgcgggaaggggggaaagagggagggaaagcgggcgggaagggggtggg
agggcgggaacaGAGACGAAGGGAAAGCCTGAGGAAGAAGTACGCGAGTA
tcaaggtgagggaggggcggaggaaggggcggagggagatggagaaggcg
cTAAGAGCGAGGGTTGACAGGTCCATGACACGCTTAGGCCCCTCCATGCC
AAGGTCGGTCCACTAAAACgatccccgccctcccccccgccctcccccgc
gccctccccccctccctccctcagtacAACCTGGACAAGCCCGACAACCC
CTACCTGCTCCACCGCATCCTCTCGGGTGACCTGTCGATGGAGgcgctct
gcctcctctccccccagGAACTGGCAGCGACGGACcaggcaagaggaggg
ggcggagagggagggagggagggagggagggagggagggagagggcaacC
GACCCTTTTTCTTGCGCTCCGGCTTGGGCGAGGGCTTGGTTCGGCGTCGT
GTGTCTCCCGTTCGTCGTCCACAGGCAGGGGTAGCGTTAGGATCAGGTTC
TGGACGAGGGTTGGGGTTGGGGTTGGGctaaggacgaggaaagtccgggt
agcttttccCCCAGGCCGGGAGGCTCCTGTGCTGacatctccccttccct
ttgccttgccttcccttcctcccctctgacTCTCCTCGAGACAGGAGGCA
GAAGCCTCCAGGCTAACGGCTGCGAAGAAGGCGCTCTTGGTGGACGTGCA
CATgttccccttgcccgtcggggagggaggggggcaagagggggtAaccg
agagaaagaggaagcgcgggAGTCTTGGGGAGGTCGAAgaccggggggag
gacgaggcgcgGGCTGGCGAggcacggcgggcggggaggacgaagaagag
gaagccgacTCCTTCCCCGACCGGTCCTCCGCGAGAACTCTTGCAGcttc
ctcaccccccttcctccccctcgtcctcctctgccgctgccgccctcccc
gtctttccccccgccgccatcgcccaGACGGGCGCCTCTGccctcaagcc
ctccgctgccccttcctcgacgtCGGGGGGCCTCGGTGAAGGGGAcacag
aaaggaagggaggcaccgtcccgccttttttccttcccgtgtGTCCGCAC
GCGCCTCTCGTTCCGTCGCCCGTAGGCTTGGacgaggtagggagggagga
ggggagggaaggagggagggaggaagggaggacattTTACACGCTGGAGC
AACCGAGcagcggcggggaagggaaaggcacATTCTTATATCTGCAGGCA
TGGACATTGGCGCACGCGCGAACCGCCTTGGCAGAGTCATTGAAGgtgag
tggggagggagggagggagggagggagggaggagggaagtaaaGAATCCG
GCGGGAcctccttacctcctctgtcccctctcgcccttttcctccctccc
tccctccctaagCGTGGTGCGCTGGtcgtgaaggggaggacgaagatcGC
GGACCTGAACAGCTACTTGCGGCAGTGCCAAAGCTCTCCTCGCTTCcagg
tccttcccctcctcctgaccgatgccgccccctccttccctgcctgcccc
cctccctccgccctccttccccgtgggtttttcccctcttcgcccgACGA
GAACAGCTTGGCGTTCACGGCCTTGGTGCAGGCGTTGGTggcagggaaga
aggcggccTACATCGGCCTgggcttctccttctctccctccgcgcccaag
gaggggggaaaggagggagggaaggaaggcgggagggagggtggggcggA
CACACTGCACATCTACATGGTGCCGCAAGCACTGCTTCGAGAATGCCCCG
CAGCCAGGGCCTGCTCCGacttggagggcgggaaggagggcgggaaggag
ggcg back to topCoding sequence (CDS) from alignment at CM002463.1:1029356..1032409+ >rna4608 ID=rna4608|Name=rna4608|organism=Nannochloropsis gaditana|type=CDS|length=6544bp|location=Sequence derived from alignment at CM002463.1:1029356..1032409+ (Nannochloropsis gaditana)
ATGACCTGgcgtcgcccctccctctgctcgTCCCTGTGCGGGaatccccc
ctctcctccttccctccctcccccccgcccttccccaggcgccgacaggg
aggagagggaaggtggagggagggaaggagggggatcgagggagaggatg
cgaAGCGCACTGCGTGAGACCTTCGAGCAGGGCCTGGGCCGCCTGCTCGa
cggggaaagaaaggaaggagggaaggaaggagggagggaaggaggggtgg
acaGAGGACGGGTGAACCGGGCGCTGAGTGCCGTCCTGGCGTGGGAGCTG
GAACGGGAGTTGCGGGACTTCGCGacgcgggaaggggggaaagagggagg
gaaagcgggcgggaagggggtgggagggcgggaacaGAGACGAAGGGAAA
GCCTGAGGAAGAAGTACGCGAGTAtcaagtacAACCTGGACAAGCCCGAC
AACCCCTACCTGCTCCACCGCATCCTCTCGGGTGACCTGTCGATGGAGgc
gctctgcctcctctccccccagGAACTGGCAGCGACGGACcagGAGGCAG
AAGCCTCCAGGCTAACGGCTGCGAAGAAGGCGCTCTTGGTGGACGTGCAC
ATgttccccttgcccgtcggggagggaggggggcaagagggggtAaccga
gagaaagaggaagcgcgggAGTCTTGGGGAGGTCGAAgaccggggggagg
acgaggcgcgGGCTGGCGAggcacggcgggcggggaggacgaagaagagg
aagccgacTCCTTCCCCGACCGGTCCTCCGCGAGAACTCTTGCAGcttcc
tcaccccccttcctccccctcgtcctcctctgccgctgccgccctccccg
tctttccccccgccgccatcgcccaGACGGGCGCCTCTGccctcaagccc
tccgctgccccttcctcgacgtCGGGGGGCCTCGGTGAAGGGGAcacaga
aaggaagggaggcaccgtcccgccttttttccttcccgtgtGTCCGCACG
CGCCTCTCGTTCCGTCGCCCGTAGGCTTGGacgaggtagggagggaggag
gggagggaaggagggagggaggaagggaggacattTTACACGCTGGAGCA
ACCGAGcagcggcggggaagggaaaggcacATTCTTATATCTGCAGGCAT
GGACATTGGCGCACGCGCGAACCGCCTTGGCAGAGTCATTGAAGCGTGGT
GCGCTGGtcgtgaaggggaggacgaagatcGCGGACCTGAACAGCTACTT
GCGGCAGTGCCAAAGCTCTCCTCGCTTCcaggtccttcccctcctcctga
ccgatgccgccccctccttccctgcctgcccccctccctccgccctcctt
ccccgtgggtttttcccctcttcgcccgACGAGAACAGCTTGGCGTTCAC
GGCCTTGGTGCAGGCGTTGGTggcagggaagaaggcggccTACATCGGCC
Tgggcttctccttctctccctccgcgcccaaggaggggggaaaggaggga
gggaaggaaggcgggagggagggtggggcggACACACTGCACATCTACAT
GGTGCCGCAAGCACTGCTTCGAGAATGCCCCGCAGCCAGGGCCTGCTCCG
acttggagggcgggaaggagggcgggaaggagggcgATGACCTGgcgtcg
cccctccctctgctcgTCCCTGTGCGGGaatcccccctctcctccttccc
tccctcccccccgcccttccccaggcgccgacagggaggagagggaaggt
ggagggagggaaggagggggatcgagggagaggatgcgaAGCGCACTGCG
TGAGACCTTCGAGCAGGGCCTGGGCCGCCTGCTCGacggggaaagaaagg
aaggagggaaggaaggagggagggaaggaggggtggacaGAGGACGGGTG
AACCGGGCGCTGAGTGCCGTCCTGGCGTGGGAGCTGGAACGGGAGTTGCG
GGACTTCGCGacgcgggaaggggggaaagagggagggaaagcgggcggga
agggggtgggagggcgggaacaGAGACGAAGGGAAAGCCTGAGGAAGAAG
TACGCGAGTAtcaagtacAACCTGGACAAGCCCGACAACCCCTACCTGCT
CCACCGCATCCTCTCGGGTGACCTGTCGATGGAGgcgctctgcctcctct
ccccccagGAACTGGCAGCGACGGACcagGAGGCAGAAGCCTCCAGGCTA
ACGGCTGCGAAGAAGGCGCTCTTGGTGGACGTGCACATgttccccttgcc
cgtcggggagggaggggggcaagagggggtAaccgagagaaagaggaagc
gcgggAGTCTTGGGGAGGTCGAAgaccggggggaggacgaggcgcgGGCT
GGCGAggcacggcgggcggggaggacgaagaagaggaagccgacTCCTTC
CCCGACCGGTCCTCCGCGAGAACTCTTGCAGcttcctcaccccccttcct
ccccctcgtcctcctctgccgctgccgccctccccgtctttccccccgcc
gccatcgcccaGACGGGCGCCTCTGccctcaagccctccgctgccccttc
ctcgacgtCGGGGGGCCTCGGTGAAGGGGAcacagaaaggaagggaggca
ccgtcccgccttttttccttcccgtgtGTCCGCACGCGCCTCTCGTTCCG
TCGCCCGTAGGCTTGGacgaggtagggagggaggaggggagggaaggagg
gagggaggaagggaggacattTTACACGCTGGAGCAACCGAGcagcggcg
gggaagggaaaggcacATTCTTATATCTGCAGGCATGGACATTGGCGCAC
GCGCGAACCGCCTTGGCAGAGTCATTGAAGCGTGGTGCGCTGGtcgtgaa
ggggaggacgaagatcGCGGACCTGAACAGCTACTTGCGGCAGTGCCAAA
GCTCTCCTCGCTTCcaggtccttcccctcctcctgaccgatgccgccccc
tccttccctgcctgcccccctccctccgccctccttccccgtgggttttt
cccctcttcgcccgACGAGAACAGCTTGGCGTTCACGGCCTTGGTGCAGG
CGTTGGTggcagggaagaaggcggccTACATCGGCCTgggcttctccttc
tctccctccgcgcccaaggaggggggaaaggagggagggaaggaaggcgg
gagggagggtggggcggACACACTGCACATCTACATGGTGCCGCAAGCAC
TGCTTCGAGAATGCCCCGCAGCCAGGGCCTGCTCCGacttggagggcggg
aaggagggcgggaaggagggcgATGACCTGgcgtcgcccctccctctgct
cgTCCCTGTGCGGGaatcccccctctcctccttccctccctcccccccgc
ccttccccaggcgccgacagggaggagagggaaggtggagggagggaagg
agggggatcgagggagaggatgcgaAGCGCACTGCGTGAGACCTTCGAGC
AGGGCCTGGGCCGCCTGCTCGacggggaaagaaaggaaggagggaaggaa
ggagggagggaaggaggggtggacaGAGGACGGGTGAACCGGGCGCTGAG
TGCCGTCCTGGCGTGGGAGCTGGAACGGGAGTTGCGGGACTTCGCGacgc
gggaaggggggaaagagggagggaaagcgggcgggaagggggtgggaggg
cgggaacaGAGACGAAGGGAAAGCCTGAGGAAGAAGTACGCGAGTAtcaa
gtacAACCTGGACAAGCCCGACAACCCCTACCTGCTCCACCGCATCCTCT
CGGGTGACCTGTCGATGGAGgcgctctgcctcctctccccccagGAACTG
GCAGCGACGGACcagGAGGCAGAAGCCTCCAGGCTAACGGCTGCGAAGAA
GGCGCTCTTGGTGGACGTGCACATgttccccttgcccgtcggggagggag
gggggcaagagggggtAaccgagagaaagaggaagcgcgggAGTCTTGGG
GAGGTCGAAgaccggggggaggacgaggcgcgGGCTGGCGAggcacggcg
ggcggggaggacgaagaagaggaagccgacTCCTTCCCCGACCGGTCCTC
CGCGAGAACTCTTGCAGcttcctcaccccccttcctccccctcgtcctcc
tctgccgctgccgccctccccgtctttccccccgccgccatcgcccaGAC
GGGCGCCTCTGccctcaagccctccgctgccccttcctcgacgtCGGGGG
GCCTCGGTGAAGGGGAcacagaaaggaagggaggcaccgtcccgcctttt
ttccttcccgtgtGTCCGCACGCGCCTCTCGTTCCGTCGCCCGTAGGCTT
GGacgaggtagggagggaggaggggagggaaggagggagggaggaaggga
ggacattTTACACGCTGGAGCAACCGAGcagcggcggggaagggaaaggc
acATTCTTATATCTGCAGGCATGGACATTGGCGCACGCGCGAACCGCCTT
GGCAGAGTCATTGAAGCGTGGTGCGCTGGtcgtgaaggggaggacgaaga
tcGCGGACCTGAACAGCTACTTGCGGCAGTGCCAAAGCTCTCCTCGCTTC
caggtccttcccctcctcctgaccgatgccgccccctccttccctgcctg
cccccctccctccgccctccttccccgtgggtttttcccctcttcgcccg
ACGAGAACAGCTTGGCGTTCACGGCCTTGGTGCAGGCGTTGGTggcaggg
aagaaggcggccTACATCGGCCTgggcttctccttctctccctccgcgcc
caaggaggggggaaaggagggagggaaggaaggcgggagggagggtgggg
cggACACACTGCACATCTACATGGTGCCGCAAGCACTGCTTCGAGAATGC
CCCGCAGCCAGGGCCTGCTCCGacttggagggcgggaaggagggcgggaa
ggagggcgATGACCTGgcgtcgcccctccctctgctcgTCCCTGTGCGGG
aatcccccctctcctccttccctccctcccccccgcccttccccaggcgc
cgacagggaggagagggaaggtggagggagggaaggagggggatcgaggg
agaggatgcgaAGCGCACTGCGTGAGACCTTCGAGCAGGGCCTGGGCCGC
CTGCTCGacggggaaagaaaggaaggagggaaggaaggagggagggaagg
aggggtggacaGAGGACGGGTGAACCGGGCGCTGAGTGCCGTCCTGGCGT
GGGAGCTGGAACGGGAGTTGCGGGACTTCGCGacgcgggaaggggggaaa
gagggagggaaagcgggcgggaagggggtgggagggcgggaacaGAGACG
AAGGGAAAGCCTGAGGAAGAAGTACGCGAGTAtcaagtacAACCTGGACA
AGCCCGACAACCCCTACCTGCTCCACCGCATCCTCTCGGGTGACCTGTCG
ATGGAGgcgctctgcctcctctccccccagGAACTGGCAGCGACGGACca
gGAGGCAGAAGCCTCCAGGCTAACGGCTGCGAAGAAGGCGCTCTTGGTGG
ACGTGCACATgttccccttgcccgtcggggagggaggggggcaagagggg
gtAaccgagagaaagaggaagcgcgggAGTCTTGGGGAGGTCGAAgaccg
gggggaggacgaggcgcgGGCTGGCGAggcacggcgggcggggaggacga
agaagaggaagccgacTCCTTCCCCGACCGGTCCTCCGCGAGAACTCTTG
CAGcttcctcaccccccttcctccccctcgtcctcctctgccgctgccgc
cctccccgtctttccccccgccgccatcgcccaGACGGGCGCCTCTGccc
tcaagccctccgctgccccttcctcgacgtCGGGGGGCCTCGGTGAAGGG
GAcacagaaaggaagggaggcaccgtcccgccttttttccttcccgtgtG
TCCGCACGCGCCTCTCGTTCCGTCGCCCGTAGGCTTGGacgaggtaggga
gggaggaggggagggaaggagggagggaggaagggaggacattTTACACG
CTGGAGCAACCGAGcagcggcggggaagggaaaggcacATTCTTATATCT
GCAGGCATGGACATTGGCGCACGCGCGAACCGCCTTGGCAGAGTCATTGA
AGCGTGGTGCGCTGGtcgtgaaggggaggacgaagatcGCGGACCTGAAC
AGCTACTTGCGGCAGTGCCAAAGCTCTCCTCGCTTCcaggtccttcccct
cctcctgaccgatgccgccccctccttccctgcctgcccccctccctccg
ccctccttccccgtgggtttttcccctcttcgcccgACGAGAACAGCTTG
GCGTTCACGGCCTTGGTGCAGGCGTTGGTggcagggaagaaggcggccTA
CATCGGCCTgggcttctccttctctccctccgcgcccaaggaggggggaa
aggagggagggaaggaaggcgggagggagggtggggcggACACACTGCAC
ATCTACATGGTGCCGCAAGCACTGCTTCGAGAATGCCCCGCAGCCAGGGC
CTGCTCCGacttggagggcgggaaggagggcgggaaggagggcg back to top
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