EWM26077.1, cds4596 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM26077.1
Unique Name	cds4596
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002463.1:1030182..1030610 +
Alignment location	CM002463.1:1030780..1030893 +
Alignment location	CM002463.1:1031200..1031850 +
Alignment location	CM002463.1:1031968..1032409 +

Link to JBrowse

Properties


Property Name	Value
End range	.
End range	1032409
Protein id	EWM26077.1
Product	Transcription elongation factor S-II, central domain protein
Partial	true
Orig transcript id	gnl\|cribi\|Naga_101239g1.2660.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:1030182..1030610 +
CM002463.1	supercontig	CM002463.1:1030780..1030893 +
CM002463.1	supercontig	CM002463.1:1031200..1031850 +
CM002463.1	supercontig	CM002463.1:1031968..1032409 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0006139	nucleobase-containing compound metabolic process
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0008135	translation factor activity, RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR003618	TFIIS_cen_dom

Homology

[Close]

BLAST of EWM26077.1 vs. NCBI_GenBank
Match: gi|585108067|gb|EWM26077.1| (Transcription elongation factor S-II, central domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 1067.37 bits (2759), Expect = 0.000e+0
Identity = 545/545 (100.00%), Postives = 545/545 (100.00%), Query Frame = 0

Query:    1 MTWRRPSLCSSLCGNPPSPPSLPPPRPSPGADREEREGGGREGGGSRERMRSALRETFEQGLGRLLDGERKEGGKEGGREGGVDRGRVNRALSAVLAWELERELRDFATREGGKEGGKAGGKGVGGREQRRRESLRKKYASIKYNLDKPDNPYLLHRILSGDLSMEALCLLSPQELAATDQEAEASRLTAAKKALLVDVHMFPLPVGEGGGQEGVTERKRKRGSLGEVEDRGEDEARAGEARRAGRTKKRKPTPSPTGPPRELLQLPHPPSSPSSSSAAAALPVFPPAAIAQTGASALKPSAAPSSTSGGLGEGDTERKGGTVPPFFLPVCPHAPLVPSPVGLDEVGREEGREGGREEGRTFYTLEQPSSGGEGKGTFLYLQAWTLAHARTALAESLKRGALVVKGRTKIADLNSYLRQCQSSPRFQVLPLLLTDAAPSFPACPPPSALLPRGFFPSSPDENSLAFTALVQALVAGKKAAYIGLGFSFSPSAPKEGGKEGGKEGGREGGADTLHIYMVPQALLRECPAARACSDLEGGKEGGKEG 545
            MTWRRPSLCSSLCGNPPSPPSLPPPRPSPGADREEREGGGREGGGSRERMRSALRETFEQGLGRLLDGERKEGGKEGGREGGVDRGRVNRALSAVLAWELERELRDFATREGGKEGGKAGGKGVGGREQRRRESLRKKYASIKYNLDKPDNPYLLHRILSGDLSMEALCLLSPQELAATDQEAEASRLTAAKKALLVDVHMFPLPVGEGGGQEGVTERKRKRGSLGEVEDRGEDEARAGEARRAGRTKKRKPTPSPTGPPRELLQLPHPPSSPSSSSAAAALPVFPPAAIAQTGASALKPSAAPSSTSGGLGEGDTERKGGTVPPFFLPVCPHAPLVPSPVGLDEVGREEGREGGREEGRTFYTLEQPSSGGEGKGTFLYLQAWTLAHARTALAESLKRGALVVKGRTKIADLNSYLRQCQSSPRFQVLPLLLTDAAPSFPACPPPSALLPRGFFPSSPDENSLAFTALVQALVAGKKAAYIGLGFSFSPSAPKEGGKEGGKEGGREGGADTLHIYMVPQALLRECPAARACSDLEGGKEGGKEG
Sbjct:    1 MTWRRPSLCSSLCGNPPSPPSLPPPRPSPGADREEREGGGREGGGSRERMRSALRETFEQGLGRLLDGERKEGGKEGGREGGVDRGRVNRALSAVLAWELERELRDFATREGGKEGGKAGGKGVGGREQRRRESLRKKYASIKYNLDKPDNPYLLHRILSGDLSMEALCLLSPQELAATDQEAEASRLTAAKKALLVDVHMFPLPVGEGGGQEGVTERKRKRGSLGEVEDRGEDEARAGEARRAGRTKKRKPTPSPTGPPRELLQLPHPPSSPSSSSAAAALPVFPPAAIAQTGASALKPSAAPSSTSGGLGEGDTERKGGTVPPFFLPVCPHAPLVPSPVGLDEVGREEGREGGREEGRTFYTLEQPSSGGEGKGTFLYLQAWTLAHARTALAESLKRGALVVKGRTKIADLNSYLRQCQSSPRFQVLPLLLTDAAPSFPACPPPSALLPRGFFPSSPDENSLAFTALVQALVAGKKAAYIGLGFSFSPSAPKEGGKEGGKEGGREGGADTLHIYMVPQALLRECPAARACSDLEGGKEGGKEG 545

[Close]

BLAST of EWM26077.1 vs. NCBI_GenBank
Match: gi|553186171|ref|XP_005854372.1| (hypothetical protein NGA_0163600, partial [Nannochloropsis gaditana CCMP526] >gi|422294687|gb|EKU21987.1| hypothetical protein NGA_0163600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 424.091 bits (1089), Expect = 4.786e-129
Identity = 216/217 (99.54%), Postives = 216/217 (99.54%), Query Frame = 0

Query:  182 EAEASRLTAAKKALLVDVHMFPLPVGEGGGQEGVTERKRKRGSLGEVEDRGEDEARAGEARRAGRTKKRKPTPSPTGPPRELLQLPHPPSSPSSSSAAAALPVFPPAAIAQTGASALKPSAAPSSTSGGLGEGDTERKGGTVPPFFLPVCPHAPLVPSPVGLDEVGREEGREGGREEGRTFYTLEQPSSGGEGKGTFLYLQAWTLAHARTALAESLK 398
            EAEASRLTAAKKALLVDVHMFPLPVGEGGGQEGVTERKRKRGSLGEVEDRGEDEARAGEARRAGRTKKRKPTPSPTGPPRELLQLPHPPSSPSSSSAAAALPVFPPAAIAQTGASALKPSAAPSSTSGGLGEGDTERKGGTVPPFFLPVCPHAPLVPSPVGLDEVGREEGREGGREEGRTFYTLEQPSSGGEGKGTFLYLQAWTLAHART LAESLK
Sbjct: 1173 EAEASRLTAAKKALLVDVHMFPLPVGEGGGQEGVTERKRKRGSLGEVEDRGEDEARAGEARRAGRTKKRKPTPSPTGPPRELLQLPHPPSSPSSSSAAAALPVFPPAAIAQTGASALKPSAAPSSTSGGLGEGDTERKGGTVPPFFLPVCPHAPLVPSPVGLDEVGREEGREGGREEGRTFYTLEQPSSGGEGKGTFLYLQAWTLAHARTTLAESLK 1389

The following BLAST results are available for this feature:

BLAST of EWM26077.1 vs. NCBI_GenBank

BLAST of EWM26077.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2


Match Name	E-value	Identity	Description
gi\|585108067\|gb\|EWM26077.1\|	0.000e+0	100.00	Transcription elongation factor S-II, central doma...	[more]
gi\|553186171\|ref\|XP_005854372.1\|	4.786e-129	99.54	hypothetical protein NGA_0163600, partial [Nannoch...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna4608	rna4608	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications