rna460, rna460 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna460
Unique Name	rna460
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	786
Alignment location	CM002455.1:1147426..1150106 +

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Properties


Property Name	Value
Product	RAP domain protein
Orig transcript id	gnl\|cribi\|Naga_100003g19.1826.mrna
Orig protein id	gnl\|cribi\|Naga_100003g19.1826
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1147426..1150106 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g19	gene444	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna460	rna460-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30309.1	cds460	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1147426..1150106+
coding sequence from alignment at CM002455.1:1147426..1150106+

mRNA sequence

>rna460 ID=rna460|Name=rna460|organism=Nannochloropsis gaditana|type=mRNA|length=786bp
ATGCAACCCCGGAAAGAGGCCTTTGCTCTTCCATACGCGACACCATCCAA
GACTGCTCCTCTATCAGGACCTGAAAGCAACTCAAGTATGGCAAATGCGA
ATCCTGGGATAAGCACGGGTTTGCCCAGACCATCTTCTTACAACAGTGTT
CATAGCAATGTCCTCGGTGATGGCCTCTACACGCAGGAGAAAGTGAAGCA
TTTGGAGGAGTACTTGCAGCTGCAGGTGAAAGAGGGATCGTACGACTTTG
AGGCGAACAAGTCGTTGCTTAAATTGTACCTGCTCTATCCCCCGCTCGCC
AATAATGAAAATGTGGAGACGATTTTGCTAAAAGCGTTACTGAATCTTCC
GGCGACGGACTTTACCCTTCTGCTTTACATCCTTCCTGAGAAGCTTCAGA
CTGATGAAAACGTCCTGACCATAAAGGATGCAGCGGAGGCCCTGGAAACG
GCAAGATATGCAGATTTTTGGTCCATTCTCAACAGCAGAGCGGCAGTTTT
TTTAGCTATCCCTGAGTGGAAAGACGACATTCGAAAAATCATATTGACAG
TCCACGCTGCCACTTACAAAGCGGTAGATAAGGCTCATGTCTCTGACGGC
GTTGGATTGAGTGGAGATGAGCTTGACAGCTTCCTTACGGCCAATACCCC
TGGGTTGGTGGCCAAGGTGGAGGTAGACCGGGTAATTTTTGCTCCTAATA
AAGAAAATCAACCGTGGGTTCGAAAATACAAAGAGAAAGTGGATTTACAA
AATATGCTTGGTATCTTGAACCGATTGGCAGCGTGA

protein sequence of rna460

>rna460-protein ID=rna460-protein|Name=rna460|organism=Nannochloropsis gaditana|type=polypeptide|length=573bp
MRVLPLRERQLGVSCIRRISTRALDFLGVGLILASLLPVYSCASPHRSRG
FLFITTSTASATASSSYKFYTSQLFGRKKAGRTKGDCADDGLPGGSSLEK
TTAPFSLSDAHVASATATSTITSLIGRSDKVEVLRTIESLPSICLDGVTV
AAAWDRLAQRTVPAGPRAPHLPPLHNDRAFHMLLERTRALLPDLSPGHCA
AVVGNLAKLRYRPDDSFLSALLFSCRSRAEAQTFGQAAHLISGLARLDYD
FKEDELGRLACLMEERLLTMEKDTLHPESLSMGLWALAVLGPLGDPSREK
LRHWLVEAAIDRLASAHAEATAAGFGQGPVLSEGKAKNLVRICRLLRTAL
LFLSDPEVGQSGKKASGTSGGWEGKEVGEGRRAAKTPSLASVSRPAPALS
PCYPLAVSNDDLNLSAFAKLRLCVDQVWLDLGAWVDPVRSSRLQMEVEST
LRYGGAYCTGEWEDEVVTVDVALHPRPMSGSEDAEGAREDRRGGRRVRPV
ALEVDGPSHFFVNQPQRPTGDTKIKHQALHLGGQWSAVISLAHFEWPKSS
KQQLAVLKKKIAQTGLEPKDFFR

mRNA from alignment at CM002455.1:1147426..1150106+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna460 ID=rna460|Name=rna460|organism=Nannochloropsis gaditana|type=mRNA|length=2681bp|location=Sequence derived from alignment at CM002455.1:1147426..1150106+ (Nannochloropsis gaditana)
GCATCCCCCAGTGCCCCAGCCTCAACTCTTTCCGGGGTTGCATGTCCAAT
TCTGTTGTCTCAAGCCCCAAGTCCTCACGTCTCAACGGTCCACGGAGCTA
CAGGCTCGGCGTCTTGCGATTGACAGCCGGCGCGGGAGCGTTCTCATGTC
CCTTTTGGTCTGACGTGCGCTTTGAGCTCTCCGAccacgggaggaggatc
aagCAGAGATGCGCGTTTTGCCGTTGCGGGAAAGGCAACTCGGTGTCTCG
TGTATACGACGGATCTCCACCAGAGCGCTTGATTTCCTGGGTGTCGGGCT
TATTCTTGCGTCACTGCTGCCCGTGTATAGTTGTGCGTCCCCACATCGGT
CTCGAGGTAAGAAACAGGCCATGCGCATGCTTGCACTTGAACTCCCTTAT
GGCACAAGACACACGCCACGAAAAAGCATATTTGTCAGCTGTGGAAAAAT
TGTTGTCATGCATTATGCGACGTGACTACTAGGCCGTATGGTGCAATGCT
TATCGGGAGCGTCTCGAATTCTTTgaagcttctttttccgatcTGATGGG
AATTACTCGCTTGCAAATAGGTTTTCTTTTTATTACAACTTCGACCGCTT
CGGCCACAGCGTCGTCATCATACAAGTTCTACACATCGCAGCTATTCGGG
CGTAAAAAGGCGGGACGAACCAAAGGGGATTGCGCAGATGATGGCCTCCC
CGGGGGCTCCAGCCTGGAGAAGACGACCGCGCCGTTCTCTCTCTCCGACG
CTCAcgtcgcctccgccactgCCACGTCCACCATCACCAGTCTGATCGGT
CGAAGTGATAAGGTCGAAGTTCTACGCACCATcgagtccctcccttccat
ctgTTTGGACGGCGTCacggtggcggcggcttgGGATCGGCTGGCGCAAC
GGACAGTGCCCGCCGGTCCCCGGGCCCCCCACTTGCCCCCCCTTCACAAC
GACCGCGCGTTCCACATGCTTTTGGAGCGGACCCGAGCGCTTCTCCCAGA
CCTGTCGCCCGGGCACTGTGCGGCGGTCGTCGGCAACTTGGCCAAGCTGC
GGTACCGGCCGGACGACTCTTTTCTCTCCGCGCTTCTATTCTCATGCCGC
AGCCGCGCAGAGGCGCAGACCTTCGGACAGGCGGCCCATTTGATTTCAGG
CCTGGCGCGATTGGACTATGATTTCAAAGAGGACGAGCTGGGGCGCCTGG
CTTGcttgatggaggagcggTTGTTGACCATGGAGAAGGACACGTTGCAC
CCCGAATCGCTCTCGATGGGTCTGTGGGCGCTCGCGGTCCTGGGCCCGCT
GGGAGACCCGAGTCGTGAAAAATTACGGCACTGGCTCGTGGAAGCGGCGA
TCGACCGACTGGCGAGCGCTCATGCGGAAGCCACCGCAGCGGGATTCGGG
CAAGGTCCTGTGCTttcggagggcaaggcgaagAACTTGGTGCGGATCTG
TCGGTTGCTTCGGACCGCTTTGCTCTTTCTTTCCGACCCGGAGGTAGGAC
AGTCTGGAAAGAAGGCGAGTGGGACGTCTGGTggctgggaagggaaggag
gtgggagaggggaggcgcgcTGCCAAGACACCCTCGCTCGCGTCTGTttc
tcgccctgcccctgccttgaGCCCTTGCTACCCCCTGGCGGTGTCAAATG
ACGACCTGAATTTGTCCGCCTTCGCAAAGCTTCGCCTGTGCGTGGACCAA
GTCTGGCTGGATCTGGGCGCCTGGGTGGACCCTGTGCGGTCCTCCCGGTT
GCAGATGGAGGTGGAATCGACCCTCCGCTACGGAGGCGCCTATTGTAccg
gggagtgggaggacgaggtggtgaCCGTGGACGTGGCGCTGCACCCTCGG
CCAATGAGTGGTAGCGAAGACGCGGAGGGCGCgcgggaggacaggagggg
gggaaggagggtgcgaCCAGTGGCCTTGGAAGTGGACGGACCGTCCCACT
TCTTTGTGAACCAGCCGCAGCGCCCGACGGGGGACACCAAGATCAAGCAC
CAGGCCCTGCACCTGGGAGGGCAGTGGTCCGCCGTCATCTCCTTGGCGCA
TTTCGAGTGGCCCAAGTCGAGCAAGCAGCAGTTGGCGGTTCTTAAAAAGA
AGATTGCGCAGACAGGCTTGGAGCCGAAAGACTTTTTCcggtgaggaagg
ggcagtCATGTAGCCCTAGTTATTATATGTACTCCAGGAAATACAATTTT
GACGTACGTGCAAGCATAAATTATATATATCCGAAAGAACTTGACACTGC
ACGGTGTTAATATTGGTTGTAGGCAGCTGGAACCTCGGACCGCGGTAGCA
AAATTTATACATAACCGTAACTTTTTTTTTGGAAGAACTGTTCAAAATGG
CCGAGCCATTATTTTTATCGAAATGCCAATTTTCCGGACAAAGCAAGCTA
CGCAGAAAGGAGTTTACGGCCCTCACTTAGGAGCGAAAAGTACACCTGTT
GAACGCAAAAAATAGAAACTCATTGTCAAGGCTCAAGTTGGGTGAGCGTA
GTTCTTGTGGCAACCAGCAGCCATCTCAAACGCGTATAAGATCTGTTGCT
CTCATTCATGGCACAAGCCATCCGCTTTCAAAATACTGAACTTCATACAC
AATATGCGCAGCCGGGTAAAGTCTAAATTCCCTCTCTACGTGCCTCCAGC
CTTTACGTTATCCTCCGTACATGGTGGTATC

Coding sequence (CDS) from alignment at CM002455.1:1147426..1150106+

>rna460 ID=rna460|Name=rna460|organism=Nannochloropsis gaditana|type=CDS|length=3444bp|location=Sequence derived from alignment at CM002455.1:1147426..1150106+ (Nannochloropsis gaditana)
ATGCGCGTTTTGCCGTTGCGGGAAAGGCAACTCGGTGTCTCGTGTATACG
ACGGATCTCCACCAGAGCGCTTGATTTCCTGGGTGTCGGGCTTATTCTTG
CGTCACTGCTGCCCGTGTATAGTTGTGCGTCCCCACATCGGTCTCGAGGT
TTTCTTTTTATTACAACTTCGACCGCTTCGGCCACAGCGTCGTCATCATA
CAAGTTCTACACATCGCAGCTATTCGGGCGTAAAAAGGCGGGACGAACCA
AAGGGGATTGCGCAGATGATGGCCTCCCCGGGGGCTCCAGCCTGGAGAAG
ACGACCGCGCCGTTCTCTCTCTCCGACGCTCAcgtcgcctccgccactgC
CACGTCCACCATCACCAGTCTGATCGGTCGAAGTGATAAGGTCGAAGTTC
TACGCACCATcgagtccctcccttccatctgTTTGGACGGCGTCacggtg
gcggcggcttgGGATCGGCTGGCGCAACGGACAGTGCCCGCCGGTCCCCG
GGCCCCCCACTTGCCCCCCCTTCACAACGACCGCGCGTTCCACATGCTTT
TGGAGCGGACCCGAGCGCTTCTCCCAGACCTGTCGCCCGGGCACTGTGCG
GCGGTCGTCGGCAACTTGGCCAAGCTGCGGTACCGGCCGGACGACTCTTT
TCTCTCCGCGCTTCTATTCTCATGCCGCAGCCGCGCAGAGGCGCAGACCT
TCGGACAGGCGGCCCATTTGATTTCAGGCCTGGCGCGATTGGACTATGAT
TTCAAAGAGGACGAGCTGGGGCGCCTGGCTTGcttgatggaggagcggTT
GTTGACCATGGAGAAGGACACGTTGCACCCCGAATCGCTCTCGATGGGTC
TGTGGGCGCTCGCGGTCCTGGGCCCGCTGGGAGACCCGAGTCGTGAAAAA
TTACGGCACTGGCTCGTGGAAGCGGCGATCGACCGACTGGCGAGCGCTCA
TGCGGAAGCCACCGCAGCGGGATTCGGGCAAGGTCCTGTGCTttcggagg
gcaaggcgaagAACTTGGTGCGGATCTGTCGGTTGCTTCGGACCGCTTTG
CTCTTTCTTTCCGACCCGGAGGTAGGACAGTCTGGAAAGAAGGCGAGTGG
GACGTCTGGTggctgggaagggaaggaggtgggagaggggaggcgcgcTG
CCAAGACACCCTCGCTCGCGTCTGTttctcgccctgcccctgccttgaGC
CCTTGCTACCCCCTGGCGGTGTCAAATGACGACCTGAATTTGTCCGCCTT
CGCAAAGCTTCGCCTGTGCGTGGACCAAGTCTGGCTGGATCTGGGCGCCT
GGGTGGACCCTGTGCGGTCCTCCCGGTTGCAGATGGAGGTGGAATCGACC
CTCCGCTACGGAGGCGCCTATTGTAccggggagtgggaggacgaggtggt
gaCCGTGGACGTGGCGCTGCACCCTCGGCCAATGAGTGGTAGCGAAGACG
CGGAGGGCGCgcgggaggacaggagggggggaaggagggtgcgaCCAGTG
GCCTTGGAAGTGGACGGACCGTCCCACTTCTTTGTGAACCAGCCGCAGCG
CCCGACGGGGGACACCAAGATCAAGCACCAGGCCCTGCACCTGGGAGGGC
AGTGGTCCGCCGTCATCTCCTTGGCGCATTTCGAGTGGCCCAAGTCGAGC
AAGCAGCAGTTGGCGGTTCTTAAAAAGAAGATTGCGCAGACAGGCTTGGA
GCCGAAAGACTTTTTCcggtgaATGCGCGTTTTGCCGTTGCGGGAAAGGC
AACTCGGTGTCTCGTGTATACGACGGATCTCCACCAGAGCGCTTGATTTC
CTGGGTGTCGGGCTTATTCTTGCGTCACTGCTGCCCGTGTATAGTTGTGC
GTCCCCACATCGGTCTCGAGGTTTTCTTTTTATTACAACTTCGACCGCTT
CGGCCACAGCGTCGTCATCATACAAGTTCTACACATCGCAGCTATTCGGG
CGTAAAAAGGCGGGACGAACCAAAGGGGATTGCGCAGATGATGGCCTCCC
CGGGGGCTCCAGCCTGGAGAAGACGACCGCGCCGTTCTCTCTCTCCGACG
CTCAcgtcgcctccgccactgCCACGTCCACCATCACCAGTCTGATCGGT
CGAAGTGATAAGGTCGAAGTTCTACGCACCATcgagtccctcccttccat
ctgTTTGGACGGCGTCacggtggcggcggcttgGGATCGGCTGGCGCAAC
GGACAGTGCCCGCCGGTCCCCGGGCCCCCCACTTGCCCCCCCTTCACAAC
GACCGCGCGTTCCACATGCTTTTGGAGCGGACCCGAGCGCTTCTCCCAGA
CCTGTCGCCCGGGCACTGTGCGGCGGTCGTCGGCAACTTGGCCAAGCTGC
GGTACCGGCCGGACGACTCTTTTCTCTCCGCGCTTCTATTCTCATGCCGC
AGCCGCGCAGAGGCGCAGACCTTCGGACAGGCGGCCCATTTGATTTCAGG
CCTGGCGCGATTGGACTATGATTTCAAAGAGGACGAGCTGGGGCGCCTGG
CTTGcttgatggaggagcggTTGTTGACCATGGAGAAGGACACGTTGCAC
CCCGAATCGCTCTCGATGGGTCTGTGGGCGCTCGCGGTCCTGGGCCCGCT
GGGAGACCCGAGTCGTGAAAAATTACGGCACTGGCTCGTGGAAGCGGCGA
TCGACCGACTGGCGAGCGCTCATGCGGAAGCCACCGCAGCGGGATTCGGG
CAAGGTCCTGTGCTttcggagggcaaggcgaagAACTTGGTGCGGATCTG
TCGGTTGCTTCGGACCGCTTTGCTCTTTCTTTCCGACCCGGAGGTAGGAC
AGTCTGGAAAGAAGGCGAGTGGGACGTCTGGTggctgggaagggaaggag
gtgggagaggggaggcgcgcTGCCAAGACACCCTCGCTCGCGTCTGTttc
tcgccctgcccctgccttgaGCCCTTGCTACCCCCTGGCGGTGTCAAATG
ACGACCTGAATTTGTCCGCCTTCGCAAAGCTTCGCCTGTGCGTGGACCAA
GTCTGGCTGGATCTGGGCGCCTGGGTGGACCCTGTGCGGTCCTCCCGGTT
GCAGATGGAGGTGGAATCGACCCTCCGCTACGGAGGCGCCTATTGTAccg
gggagtgggaggacgaggtggtgaCCGTGGACGTGGCGCTGCACCCTCGG
CCAATGAGTGGTAGCGAAGACGCGGAGGGCGCgcgggaggacaggagggg
gggaaggagggtgcgaCCAGTGGCCTTGGAAGTGGACGGACCGTCCCACT
TCTTTGTGAACCAGCCGCAGCGCCCGACGGGGGACACCAAGATCAAGCAC
CAGGCCCTGCACCTGGGAGGGCAGTGGTCCGCCGTCATCTCCTTGGCGCA
TTTCGAGTGGCCCAAGTCGAGCAAGCAGCAGTTGGCGGTTCTTAAAAAGA
AGATTGCGCAGACAGGCTTGGAGCCGAAAGACTTTTTCcggtga

Synonyms

Publications