EWM30309.1, cds460 (CDS) Nannochloropsis gaditana

Overview
NameEWM30309.1
Unique Namecds460
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1147634..1147781 +
Alignment locationCM002455.1:1147996..1149569 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30309.1
ProductRAP domain protein
Orig transcript idgnl|cribi|Naga_100003g19.1826.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1147634..1147781 +
CM002455.1supercontigCM002455.1:1147996..1149569 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR013584RAP
Homology
BLAST of EWM30309.1 vs. NCBI_GenBank
Match: gi|585112968|gb|EWM30309.1| (RAP domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1159.44 bits (2998), Expect = 0.000e+0
Identity = 573/573 (100.00%), Postives = 573/573 (100.00%), Query Frame = 0
Query:    1 MRVLPLRERQLGVSCIRRISTRALDFLGVGLILASLLPVYSCASPHRSRGFLFITTSTASATASSSYKFYTSQLFGRKKAGRTKGDCADDGLPGGSSLEKTTAPFSLSDAHVASATATSTITSLIGRSDKVEVLRTIESLPSICLDGVTVAAAWDRLAQRTVPAGPRAPHLPPLHNDRAFHMLLERTRALLPDLSPGHCAAVVGNLAKLRYRPDDSFLSALLFSCRSRAEAQTFGQAAHLISGLARLDYDFKEDELGRLACLMEERLLTMEKDTLHPESLSMGLWALAVLGPLGDPSREKLRHWLVEAAIDRLASAHAEATAAGFGQGPVLSEGKAKNLVRICRLLRTALLFLSDPEVGQSGKKASGTSGGWEGKEVGEGRRAAKTPSLASVSRPAPALSPCYPLAVSNDDLNLSAFAKLRLCVDQVWLDLGAWVDPVRSSRLQMEVESTLRYGGAYCTGEWEDEVVTVDVALHPRPMSGSEDAEGAREDRRGGRRVRPVALEVDGPSHFFVNQPQRPTGDTKIKHQALHLGGQWSAVISLAHFEWPKSSKQQLAVLKKKIAQTGLEPKDFFR 573
            MRVLPLRERQLGVSCIRRISTRALDFLGVGLILASLLPVYSCASPHRSRGFLFITTSTASATASSSYKFYTSQLFGRKKAGRTKGDCADDGLPGGSSLEKTTAPFSLSDAHVASATATSTITSLIGRSDKVEVLRTIESLPSICLDGVTVAAAWDRLAQRTVPAGPRAPHLPPLHNDRAFHMLLERTRALLPDLSPGHCAAVVGNLAKLRYRPDDSFLSALLFSCRSRAEAQTFGQAAHLISGLARLDYDFKEDELGRLACLMEERLLTMEKDTLHPESLSMGLWALAVLGPLGDPSREKLRHWLVEAAIDRLASAHAEATAAGFGQGPVLSEGKAKNLVRICRLLRTALLFLSDPEVGQSGKKASGTSGGWEGKEVGEGRRAAKTPSLASVSRPAPALSPCYPLAVSNDDLNLSAFAKLRLCVDQVWLDLGAWVDPVRSSRLQMEVESTLRYGGAYCTGEWEDEVVTVDVALHPRPMSGSEDAEGAREDRRGGRRVRPVALEVDGPSHFFVNQPQRPTGDTKIKHQALHLGGQWSAVISLAHFEWPKSSKQQLAVLKKKIAQTGLEPKDFFR
Sbjct:    1 MRVLPLRERQLGVSCIRRISTRALDFLGVGLILASLLPVYSCASPHRSRGFLFITTSTASATASSSYKFYTSQLFGRKKAGRTKGDCADDGLPGGSSLEKTTAPFSLSDAHVASATATSTITSLIGRSDKVEVLRTIESLPSICLDGVTVAAAWDRLAQRTVPAGPRAPHLPPLHNDRAFHMLLERTRALLPDLSPGHCAAVVGNLAKLRYRPDDSFLSALLFSCRSRAEAQTFGQAAHLISGLARLDYDFKEDELGRLACLMEERLLTMEKDTLHPESLSMGLWALAVLGPLGDPSREKLRHWLVEAAIDRLASAHAEATAAGFGQGPVLSEGKAKNLVRICRLLRTALLFLSDPEVGQSGKKASGTSGGWEGKEVGEGRRAAKTPSLASVSRPAPALSPCYPLAVSNDDLNLSAFAKLRLCVDQVWLDLGAWVDPVRSSRLQMEVESTLRYGGAYCTGEWEDEVVTVDVALHPRPMSGSEDAEGAREDRRGGRRVRPVALEVDGPSHFFVNQPQRPTGDTKIKHQALHLGGQWSAVISLAHFEWPKSSKQQLAVLKKKIAQTGLEPKDFFR 573          
BLAST of EWM30309.1 vs. NCBI_GenBank
Match: gi|585112497|gb|EWM29914.1| (hypothetical protein Naga_100035g39 [Nannochloropsis gaditana])

HSP 1 Score: 83.1889 bits (204), Expect = 6.334e-13
Identity = 113/434 (26.04%), Postives = 173/434 (39.86%), Query Frame = 0
Query:  193 DLSPGHCAAVVGNLAKLRYRPDDSFLSALLFSCRSRAEAQTFGQA-AHLISGLARLDYDFKEDELGRLACLMEERLLTMEKDTLHPESLSMGLWALAVLGPLGDPSREKLRHWLVEAAIDRLASA----HAEATAAGFGQGPVLSEGKAKNLVRICRLLRTAL--LFLSDPEVGQ---SGKKASGTSGGWEGKEVGEGRRAAKTPSLASVSRPAPALSPCYPLAVSNDDLNL---------SAFAKLRL-----------CVDQVWLDLGAWVDPVRSSRLQMEVESTLRYGGAYCTGEWE--DEVVTVDVALHPR------PMSGSEDAEGAREDRRGGRRVRPVALEVDGPSHFFVNQPQRPTGDTKIKHQAL------------HLGGQ-WSAVISLAHFEWPKSS---KQQLAVLKKKIAQTGLEPKDFF 572
            +L P   A VV   A+++ R DD  L  L  S   R   Q+ GQA A +I+  ARL Y   +  L      +  R+ T++       SL + LW+LAV+        E          I   AS       + T+A      +L +  A   VR+   LR  L  L L+   VG+   S ++  G     +   V     A   P+L+  SRP+P +    P  ++     +          +FA   L            V + W  +    +P   S L  +V  TL   G     E +  +   ++D+ L PR          ++      E     R   PV +EVDGPSH+ VN P   TGDT  K + L            H   Q W+AV+SL  +EW +     + ++A+L++K+   GL  +D+ 
Sbjct:  939 NLGPQDVAMVVNAFARMQMRADDHLLDNLAVSLLDRL-PQSEGQALASVINAFARLRYHPGQGFLAAFEVEVRRRIATLDLS-----SLCLILWSLAVM--------ESSACSSSSMPIRNGASGARWEETDGTSASALSPALLEDAIA---VRLLPELRAQLSRLELARSAVGKQIDSNEEIDGIDAESQSSHVPGPSLALSGPTLSQRSRPSPPVPRLSPALLTRSLCQILQVLLYTSSCSFAPAELRDIPGSKALYSLVIRAWGHVAHLREPPVPSALHQQVMGTLTLAGVSYRAEEKVCEGTFSLDLVLFPRGNCRNCSSDRNKSVLDGEEASHSSRVALPVVVEVDGPSHYMVNMPDMLTGDTMFKRRMLLGQRSLRKDEGAHAPSQRWAAVLSLLLWEWEEVGPRYQNKIALLRRKLKAEGLRLEDYI 1355          
BLAST of EWM30309.1 vs. NCBI_GenBank
Match: gi|585112903|gb|EWM30244.1| (RAP domain protein [Nannochloropsis gaditana])

HSP 1 Score: 67.781 bits (164), Expect = 4.004e-8
Identity = 88/378 (23.28%), Postives = 156/378 (41.27%), Query Frame = 0
Query:  200 AAVVGNLAKLRYRPDDSFLSALLFSCR-SRAEAQTFG-QAAHLISGLARLDYDFKEDELGRLACLMEERLLTMEKDTLHPESLSMGLWALAVLGPLGDPSREK-LRHWLVEAAIDRLASAHAEATAAGFGQGPVLSEGKAKNLVRICRLLRTALLFLSDPEVGQSGKKASGTSGGWEGKEVGEGRRAAKTPSLASVSRPAPALSPCYPLAVSNDDLNLSAFAKLRLCVDQVWLDLGAWVDPVRSSRLQMEVESTL-RYGGAYCTGEWEDEVVTVDVALHPRPMSGSEDAEGAREDRRGGRRVRPVALEVDGPSHFFVNQPQRPTGDTKIKHQALH-LGGQWSAVISLAHFEWPK-----SSKQQLAVLKKKIAQTGLE 567
            A  +    +L ++P    L  +  S   +  E   FG + A  ++GLA L++       GR      + ++  +K+ +   ++++ LW+L+ L    DP+R K     +VE A  RL     +     F        G+           R+++ + S  EV         T GG           + + P +  V +    L  C  L +  + ++ + F +    +++ W ++      V +S    +V + + +  G  C  E EDE  T+D+ ++P                 GG    PV +E DGP HFF NQP    G T  KH+ L     +W AV+S++  EW +     S + + A+L +K+   GL+
Sbjct:  670 AMTLNAFNRLNWKPSPRLLLEMEKSLECATCEGLIFGAELAQAVNGLANLNHT-----PGRSFLAAFKNVILEQKNYVDLSTIAVILWSLSAL----DPARMKGFYTEMVEVACRRLEGEQPDILPTSFS-------GE-----------RSSMYYTSFNEV-------VPTIGG----------ESLEPPMVMCVRQ---LLQTCRYLTMLANPIDPALFQRFSSLLEKKWAEIQREKYEVHTSYFHRDVLAVVTKSLGLRCDIEVEDEAYTLDMVIYPT---------------DGGL---PVVVEADGPHHFFRNQPDEAMGFTVFKHRLLQGRSDRWRAVVSVSQAEWQRAKESDSQRGRTALLIEKLRGAGLD 982          
The following BLAST results are available for this feature:
BLAST of EWM30309.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585112968|gb|EWM30309.1|0.000e+0100.00RAP domain protein [Nannochloropsis gaditana][more]
gi|585112497|gb|EWM29914.1|6.334e-1326.04hypothetical protein Naga_100035g39 [Nannochlorops... [more]
gi|585112903|gb|EWM30244.1|4.004e-823.28RAP domain protein [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna460rna460Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications