EWM30309.1, cds460 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30309.1 vs. NCBI_GenBank
Match: gi|585112968|gb|EWM30309.1| (RAP domain protein [Nannochloropsis gaditana]) HSP 1 Score: 1159.44 bits (2998), Expect = 0.000e+0 Identity = 573/573 (100.00%), Postives = 573/573 (100.00%), Query Frame = 0
Query: 1 MRVLPLRERQLGVSCIRRISTRALDFLGVGLILASLLPVYSCASPHRSRGFLFITTSTASATASSSYKFYTSQLFGRKKAGRTKGDCADDGLPGGSSLEKTTAPFSLSDAHVASATATSTITSLIGRSDKVEVLRTIESLPSICLDGVTVAAAWDRLAQRTVPAGPRAPHLPPLHNDRAFHMLLERTRALLPDLSPGHCAAVVGNLAKLRYRPDDSFLSALLFSCRSRAEAQTFGQAAHLISGLARLDYDFKEDELGRLACLMEERLLTMEKDTLHPESLSMGLWALAVLGPLGDPSREKLRHWLVEAAIDRLASAHAEATAAGFGQGPVLSEGKAKNLVRICRLLRTALLFLSDPEVGQSGKKASGTSGGWEGKEVGEGRRAAKTPSLASVSRPAPALSPCYPLAVSNDDLNLSAFAKLRLCVDQVWLDLGAWVDPVRSSRLQMEVESTLRYGGAYCTGEWEDEVVTVDVALHPRPMSGSEDAEGAREDRRGGRRVRPVALEVDGPSHFFVNQPQRPTGDTKIKHQALHLGGQWSAVISLAHFEWPKSSKQQLAVLKKKIAQTGLEPKDFFR 573
MRVLPLRERQLGVSCIRRISTRALDFLGVGLILASLLPVYSCASPHRSRGFLFITTSTASATASSSYKFYTSQLFGRKKAGRTKGDCADDGLPGGSSLEKTTAPFSLSDAHVASATATSTITSLIGRSDKVEVLRTIESLPSICLDGVTVAAAWDRLAQRTVPAGPRAPHLPPLHNDRAFHMLLERTRALLPDLSPGHCAAVVGNLAKLRYRPDDSFLSALLFSCRSRAEAQTFGQAAHLISGLARLDYDFKEDELGRLACLMEERLLTMEKDTLHPESLSMGLWALAVLGPLGDPSREKLRHWLVEAAIDRLASAHAEATAAGFGQGPVLSEGKAKNLVRICRLLRTALLFLSDPEVGQSGKKASGTSGGWEGKEVGEGRRAAKTPSLASVSRPAPALSPCYPLAVSNDDLNLSAFAKLRLCVDQVWLDLGAWVDPVRSSRLQMEVESTLRYGGAYCTGEWEDEVVTVDVALHPRPMSGSEDAEGAREDRRGGRRVRPVALEVDGPSHFFVNQPQRPTGDTKIKHQALHLGGQWSAVISLAHFEWPKSSKQQLAVLKKKIAQTGLEPKDFFR
Sbjct: 1 MRVLPLRERQLGVSCIRRISTRALDFLGVGLILASLLPVYSCASPHRSRGFLFITTSTASATASSSYKFYTSQLFGRKKAGRTKGDCADDGLPGGSSLEKTTAPFSLSDAHVASATATSTITSLIGRSDKVEVLRTIESLPSICLDGVTVAAAWDRLAQRTVPAGPRAPHLPPLHNDRAFHMLLERTRALLPDLSPGHCAAVVGNLAKLRYRPDDSFLSALLFSCRSRAEAQTFGQAAHLISGLARLDYDFKEDELGRLACLMEERLLTMEKDTLHPESLSMGLWALAVLGPLGDPSREKLRHWLVEAAIDRLASAHAEATAAGFGQGPVLSEGKAKNLVRICRLLRTALLFLSDPEVGQSGKKASGTSGGWEGKEVGEGRRAAKTPSLASVSRPAPALSPCYPLAVSNDDLNLSAFAKLRLCVDQVWLDLGAWVDPVRSSRLQMEVESTLRYGGAYCTGEWEDEVVTVDVALHPRPMSGSEDAEGAREDRRGGRRVRPVALEVDGPSHFFVNQPQRPTGDTKIKHQALHLGGQWSAVISLAHFEWPKSSKQQLAVLKKKIAQTGLEPKDFFR 573
BLAST of EWM30309.1 vs. NCBI_GenBank
Match: gi|585112497|gb|EWM29914.1| (hypothetical protein Naga_100035g39 [Nannochloropsis gaditana]) HSP 1 Score: 83.1889 bits (204), Expect = 6.334e-13 Identity = 113/434 (26.04%), Postives = 173/434 (39.86%), Query Frame = 0
Query: 193 DLSPGHCAAVVGNLAKLRYRPDDSFLSALLFSCRSRAEAQTFGQA-AHLISGLARLDYDFKEDELGRLACLMEERLLTMEKDTLHPESLSMGLWALAVLGPLGDPSREKLRHWLVEAAIDRLASA----HAEATAAGFGQGPVLSEGKAKNLVRICRLLRTAL--LFLSDPEVGQ---SGKKASGTSGGWEGKEVGEGRRAAKTPSLASVSRPAPALSPCYPLAVSNDDLNL---------SAFAKLRL-----------CVDQVWLDLGAWVDPVRSSRLQMEVESTLRYGGAYCTGEWE--DEVVTVDVALHPR------PMSGSEDAEGAREDRRGGRRVRPVALEVDGPSHFFVNQPQRPTGDTKIKHQAL------------HLGGQ-WSAVISLAHFEWPKSS---KQQLAVLKKKIAQTGLEPKDFF 572
+L P A VV A+++ R DD L L S R Q+ GQA A +I+ ARL Y + L + R+ T++ SL + LW+LAV+ E I AS + T+A +L + A VR+ LR L L L+ VG+ S ++ G + V A P+L+ SRP+P + P ++ + +FA L V + W + +P S L +V TL G E + + ++D+ L PR ++ E R PV +EVDGPSH+ VN P TGDT K + L H Q W+AV+SL +EW + + ++A+L++K+ GL +D+
Sbjct: 939 NLGPQDVAMVVNAFARMQMRADDHLLDNLAVSLLDRL-PQSEGQALASVINAFARLRYHPGQGFLAAFEVEVRRRIATLDLS-----SLCLILWSLAVM--------ESSACSSSSMPIRNGASGARWEETDGTSASALSPALLEDAIA---VRLLPELRAQLSRLELARSAVGKQIDSNEEIDGIDAESQSSHVPGPSLALSGPTLSQRSRPSPPVPRLSPALLTRSLCQILQVLLYTSSCSFAPAELRDIPGSKALYSLVIRAWGHVAHLREPPVPSALHQQVMGTLTLAGVSYRAEEKVCEGTFSLDLVLFPRGNCRNCSSDRNKSVLDGEEASHSSRVALPVVVEVDGPSHYMVNMPDMLTGDTMFKRRMLLGQRSLRKDEGAHAPSQRWAAVLSLLLWEWEEVGPRYQNKIALLRRKLKAEGLRLEDYI 1355
BLAST of EWM30309.1 vs. NCBI_GenBank
Match: gi|585112903|gb|EWM30244.1| (RAP domain protein [Nannochloropsis gaditana]) HSP 1 Score: 67.781 bits (164), Expect = 4.004e-8 Identity = 88/378 (23.28%), Postives = 156/378 (41.27%), Query Frame = 0
Query: 200 AAVVGNLAKLRYRPDDSFLSALLFSCR-SRAEAQTFG-QAAHLISGLARLDYDFKEDELGRLACLMEERLLTMEKDTLHPESLSMGLWALAVLGPLGDPSREK-LRHWLVEAAIDRLASAHAEATAAGFGQGPVLSEGKAKNLVRICRLLRTALLFLSDPEVGQSGKKASGTSGGWEGKEVGEGRRAAKTPSLASVSRPAPALSPCYPLAVSNDDLNLSAFAKLRLCVDQVWLDLGAWVDPVRSSRLQMEVESTL-RYGGAYCTGEWEDEVVTVDVALHPRPMSGSEDAEGAREDRRGGRRVRPVALEVDGPSHFFVNQPQRPTGDTKIKHQALH-LGGQWSAVISLAHFEWPK-----SSKQQLAVLKKKIAQTGLE 567
A + +L ++P L + S + E FG + A ++GLA L++ GR + ++ +K+ + ++++ LW+L+ L DP+R K +VE A RL + F G+ R+++ + S EV T GG + + P + V + L C L + + ++ + F + +++ W ++ V +S +V + + + G C E EDE T+D+ ++P GG PV +E DGP HFF NQP G T KH+ L +W AV+S++ EW + S + + A+L +K+ GL+
Sbjct: 670 AMTLNAFNRLNWKPSPRLLLEMEKSLECATCEGLIFGAELAQAVNGLANLNHT-----PGRSFLAAFKNVILEQKNYVDLSTIAVILWSLSAL----DPARMKGFYTEMVEVACRRLEGEQPDILPTSFS-------GE-----------RSSMYYTSFNEV-------VPTIGG----------ESLEPPMVMCVRQ---LLQTCRYLTMLANPIDPALFQRFSSLLEKKWAEIQREKYEVHTSYFHRDVLAVVTKSLGLRCDIEVEDEAYTLDMVIYPT---------------DGGL---PVVVEADGPHHFFRNQPDEAMGFTVFKHRLLQGRSDRWRAVVSVSQAEWQRAKESDSQRGRTALLIEKLRGAGLD 982 The following BLAST results are available for this feature:
BLAST of EWM30309.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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