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Properties
| Property Name | Value |
|---|
| Product | Winged helix-turn-helix transcription repressor |
| Orig transcript id | gnl|cribi|Naga_100003g20.1720.mrna |
| Orig protein id | gnl|cribi|Naga_100003g20.1720 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:1145995..1147468 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna459 ID=rna459|Name=rna459|organism=Nannochloropsis gaditana|type=mRNA|length=2951bp
GCGAATTGACTTGTTTATTTTTAACCTCCTCACCCTCTGCCGCTGGCGGT
TAGGTCGTCGTCCCCCCTCTTCTTTCTGCTCTTCCATCTCGTCATTGGTA
ATGTTTTCCGCCTAATGCTTGGTAGTTGTTTTTCGTTCTTTGCAGGTTAT
TGAGAAAGTTGCAGAGCCTCCTTCTCACGTGAGATCTTGCTTTCTGGTGT
CGTCTTTCATTGTAAGAGCAGCGTCTTCCATTCCGAAGACATCACCCACC
GGCTCTCATTATATCAGAACTTAAGCTGCGAGGGCATATACTCAGCGTCT
CACTCCTTTCCTGTAAATTAAGTGATAGGGTCAACACGCGTGGATCCTTG
TACAGACGGTTGACATGGATGTAGACGTCGCTGCTTTGCTGCAGGAGGAT
GACGAGGACACGAGCGACCCCCCCCCTGCCCCTGTCAATCCCACGTCGCC
CCCCCCCCCCCTTCTACTTGCTCCTCGGCCGGGCGGAGGTCCGCGTCCTG
GGCTTTCTCCTGGGTACTATAGCAGTAATGCGCGGTCCGCTCCTTCAAGC
TTTCCCACAGGGTATAATCCATCCCAAATGCAGCAGTTCCCTCAAGCTGG
GCAAGCTCAGGGCCAAGCACAGCGGCAACAGCAGCAACAGCATCCAAATT
TTCAACCACAGCCACCACCGAACATGACAACACCATCACAACAGCGACAG
GCCCTGCAGCAATCCTATCACATCCCAGCGCAAGGCTTCCCTTCCCAATC
CCAGCCGCAGCAGCAGCATCAACAGTCTCTGCGCCATCAGCAGCAGCAGC
AACAACAACATCAGCAACGTCAACAACAACAACAACATCATCATCAACAA
CAACAACCACCACAACTACAACAACCACCACCACCACAACAACAACAACA
TCAACAATATCATCAACAAAACCAACAACAACAACAACAACCACAACCAC
AGCAACAGCAACAAGAGTACCAGCAGCAGAAGCAGCGACAGCACTTCCAG
CAGCAGCAGCAGCAGCAACAACAACAATACCAACATCAACAACGTCAACA
ACAACAACCCCAACTGCAACAACCACAACAACAATATCATCACCAACACC
AACAACAACAGCAACAACAACCATCACCACAACAACAACCACGAAAACAA
CAACAACAACAACAACAACAACAACCACAACAACAACAACAACAACAACA
ACAACAACAACAACTATTGCAGCAACGGCAGTTATCGCAGCAGCCGCAAC
ATTCACAACAGCCAACGCAACAGTCGCAACCACAACAGCATTTGCAGCAG
CGTCCACTCCACCATCAACAGCAGCATCAGCTTCAGCAGCAACACCAGCC
AGCGACACCTCAGGTGCAGCTCCAGCAACCACCAGGCGCCCCGGCAGTCG
GCTCACAGCAGTCCCTTCGAAGGCCAGCGCCATCCCAAATCGTTCAGTCG
TCTCACCAGCAGCAAAGCTATCCACAGCAACAGCAATCACCGTCGCATCA
ACATCTCCAACGCCCTTCACAATACCAAGACCCCGCCACGGCCAACACTA
CGAACACGCACCAGAGCGGCAACAGTAGTGCTAACACGGCCGGCACGGGT
AGCGGAGGGCCTCGAAAGGCGAGTTTTGCAGAATGTCTCTATCGGACCAT
GTTGAAAATGGACACCGAGAAAAAGGTCTCGATTCAGGAGGCTTTCCGGT
ATTTCAAGGCACACCCTAAACTGCCTCACGTGGAGGTTCAACAAAAGTTA
GTCGAATTGTTAGGCAAAGATTTTGTGTCGCGCGCGTGGAGGGAAGCGCG
GCGCTTATTGGAGCAAGCGGGGGGACAGCGGGGGGATGGGGAAAGGTTTT
CGCCGGACAAGCCCCCGTCTTCCCGACAGCAACATCAGCTACCACACCAA
GAGCAGGGAGCAGCCCGGGCCCCTCTACAGCAGCCACAGGGGGGTCAGGT
GGTGGAGGCCTTGGATGATTTGGATCTGATCAACGCCCAGCAAGCAACGG
GGGAGGATATTGAATCCGATATCACCAGGGAGGCGGACTTGGAGTGTATC
GTGCGGGAGGAGGACGAAGGTCTCCTGGAGCACATCCAGCCTCTGCGTAT
GCTGAGTGCAAAGGAGGCAGAGACCTGGGAATTCAAACATGTTATGGACG
GAGAATTGGTTCGTAAAGCTTTGAGGAGGGCGGAACGTAGGGAGGAAGAG
AGGCTGAGTGCGCGTACAGTAAGATGTGCAAATGGAGGGGAGAAAGGCAA
ACTCGGGATGGGCGCAGAGGATCAAGGGAGAAAGAAATTGGTGGGGGAGG
GGAAGGGCAAGGTGGAAGAAAAAGAAAGGCAAGAAGAGCCCGAGGAGGAC
GAGTCCTTGGGCAGGGCGCGTGCGGTGGAGGCTTTATCCCGAGCGTGCCA
GGACTATGCGACGGGATTATTGGAAGACTTGGTGCGGCTGGCGAAGCAGC
GGGAAAACGAGGACGTGCGACATTTGGTCCGTGAGGGGGCGACATTGGGT
GCGCAAGAACCCATGGTTGTCAGGTTTCTGGCTCCCTACGAGCTACCGGG
AAGGAAGAATGCCGATGAGAACGAAGCGGAAGAGGAGCAGGAGCAGCAGG
GGAAGGGCCAACATAGAAATGGAGAGGCGACAGAGAGTTTGCGGCCCGAG
GAGGGTCATATCCTAAGGCGTACGGACGTGGTTCGATATTTGGGAAGAAA
GCAGAGGAGGGGCAGGCGGCAGGGGCATGATCGGTTGATAGACATGTTGG
CAACCACAAACGTGAAGAGAGGGGAGCTCAGCCGAGGCGCCAGCGGACAA
GCACATCTCCGGGGGCCGTCGATTAAGGGGCGATACAGCTGAAAGTGCAC
AGCACAGCGTATACACGTCCATGGTGCGACAGGTCGTACGGAGGCAAAAA
TAGAAAATGTCGACAGTGATAAGAAAGCAAATTATTGAACTCGACAATGA
T back to topprotein sequence of rna459 >rna459-protein ID=rna459-protein|Name=rna459|organism=Nannochloropsis gaditana|type=polypeptide|length=261bp
MQPRKEAFALPYATPSKTAPLSGPESNSSMANANPGISTGLPRPSSYNSV
HSNVLGDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLA
NNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALET
ARYADFWSILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDG
VGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQ
NMLGILNRLAA back to topmRNA from alignment at CM002455.1:1145995..1147468- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna459 ID=rna459|Name=rna459|organism=Nannochloropsis gaditana|type=mRNA|length=1474bp|location=Sequence derived from alignment at CM002455.1:1145995..1147468- (Nannochloropsis gaditana)
ATGCAACCCCGGAAAGAGTTGAGGCTGGGGCACTGGGGGATGCCCTACCA
CGGTGACGCTCGCCCCCGAGAAGCATTGCCAGCCCCACGCTTGGCGCCCG
GGGAAAACGAGCCTGTCGGACGGTGCCGGACAGTTCCTGGTCCTGGATGT
GCAATTGTTGAAATTTTTAGTCCAGTTATGTTGTGATGATTGGTATCTCG
GGGTCACCTTTCACATCTTCCTGTACAGGGCCTTTGCTCTTCCATACGCG
ACACCATCCAAGACTGCTCCTCTATCAGGACCTGAAAGCAACTCAAGTAT
GGCAAATGCGAATCCTGGGATAAGCACGGGTTTGCCCAGACCATCTTCTT
ACAACAGTGTTCATAGCAATGTCCTCGGTGATGGCCTCTACACGCAGGAG
AAAGTGAAGCATTTGGAGGAGTACTTGCAGCTGCAGGTGAGTTTTAACGG
AGCGTTTGGGGCAATGGCAGACGTCATGTCAAGCATCACACTTACCTTGT
TTTAATATTGTTTGAAATATTTTGTTAGGTGAAAGAGGGATCGTACGACT
TTGAGGCGAACAAGTCGTTGCTTAAATTGTACCTGCTCTATCCCCCGCTC
GCCAATAATGAAAATGTGGAGACGGTAAGGCGGCCACCTGTTTTCGATCG
ATGCCTGTGAGCTTGATGGGACAGTGTAAATTGCTCCAAAATGCTGATTG
CAATCGGCAAACCCGATGAAAGATTTGTCGCGATAGGGAAGGCAAGAGAC
ATATTTTCACGTTATGATCCCTTCTGACATCCCCACCTAGATTTTGCTAA
AAGCGTTACTGAATCTTCCGGCGACGGACTTTACCCTTCTGCTTTACATC
CTTCCTGAGAAGCTTCAGACTGATGTAAGTTTGGCGGAGGGAAATACGAA
ATCGGCCTTGTGGAGCATGTGAGTGGCACGTTTCCTTCACACATCTTTTA
TACCTGTGTGCGCTATTCTAGGAAAACGTCCTGACCATAAAGGATGCAGC
GGAGGCCCTGGAAACGGCAAGATATGCAGATTTTTGGTCCATTCTCAACA
GCAGAGCGGCAGTTTTTTTAGCTATCCCTGAGTGGAAAGACGACATTCGA
AAAAGTAAGTGCTTTGTGAGATGTTTTCTTTTTCTTCAATGTTCGGATGA
TGCAAAGGGAAGATAGACTTGTGTGTACGGCCGTTCAATCTCAGAACTCA
GACCCTCATTCCTACACCTTTTATAGTCATATTGACAGTCCACGCTGCCA
CTTACAAAGCGGTAGATAAGGCTCATGTCTCTGACGGCGTTGGATTGAGT
GGAGATGAGCTTGACAGCTTCCTTACGGCCAATACCCCTGGGTTGGTGGC
CAAGGTGGAGGTAGACCGGGTAATTTTTGCTCCTAATAAAGAAAATCAAC
CGTGGGTTCGAAAATACAAAGAGAAAGTGGATTTACAAAATATGCTTGGT
ATCTTGAACCGATTGGCAGCGTGA back to topCoding sequence (CDS) from alignment at CM002455.1:1145995..1147468- >rna459 ID=rna459|Name=rna459|organism=Nannochloropsis gaditana|type=CDS|length=4716bp|location=Sequence derived from alignment at CM002455.1:1145995..1147468- (Nannochloropsis gaditana)
TCATATTGACAGTCCACGCTGCCACTTACAAAGCGGTAGATAAGGCTCAT
GTCTCTGACGGCGTTGGATTGAGTGGAGATGAGCTTGACAGCTTCCTTAC
GGCCAATACCCCTGGGTTGGTGGCCAAGGTGGAGGTAGACCGGGTAATTT
TTGCTCCTAATAAAGAAAATCAACCGTGGGTTCGAAAATACAAAGAGAAA
GTGGATTTACAAAATATGCTTGGTATCTTGAACCGATTGGCAGCGTGAGA
AAACGTCCTGACCATAAAGGATGCAGCGGAGGCCCTGGAAACGGCAAGAT
ATGCAGATTTTTGGTCCATTCTCAACAGCAGAGCGGCAGTTTTTTTAGCT
ATCCCTGAGTGGAAAGACGACATTCGAAAAAATTTTGCTAAAAGCGTTAC
TGAATCTTCCGGCGACGGACTTTACCCTTCTGCTTTACATCCTTCCTGAG
AAGCTTCAGACTGATGTGAAAGAGGGATCGTACGACTTTGAGGCGAACAA
GTCGTTGCTTAAATTGTACCTGCTCTATCCCCCGCTCGCCAATAATGAAA
ATGTGGAGACGGGCCTTTGCTCTTCCATACGCGACACCATCCAAGACTGC
TCCTCTATCAGGACCTGAAAGCAACTCAAGTATGGCAAATGCGAATCCTG
GGATAAGCACGGGTTTGCCCAGACCATCTTCTTACAACAGTGTTCATAGC
AATGTCCTCGGTGATGGCCTCTACACGCAGGAGAAAGTGAAGCATTTGGA
GGAGTACTTGCAGCTGCAGATGCAACCCCGGAAAGATCATATTGACAGTC
CACGCTGCCACTTACAAAGCGGTAGATAAGGCTCATGTCTCTGACGGCGT
TGGATTGAGTGGAGATGAGCTTGACAGCTTCCTTACGGCCAATACCCCTG
GGTTGGTGGCCAAGGTGGAGGTAGACCGGGTAATTTTTGCTCCTAATAAA
GAAAATCAACCGTGGGTTCGAAAATACAAAGAGAAAGTGGATTTACAAAA
TATGCTTGGTATCTTGAACCGATTGGCAGCGTGAGAAAACGTCCTGACCA
TAAAGGATGCAGCGGAGGCCCTGGAAACGGCAAGATATGCAGATTTTTGG
TCCATTCTCAACAGCAGAGCGGCAGTTTTTTTAGCTATCCCTGAGTGGAA
AGACGACATTCGAAAAAATTTTGCTAAAAGCGTTACTGAATCTTCCGGCG
ACGGACTTTACCCTTCTGCTTTACATCCTTCCTGAGAAGCTTCAGACTGA
TGTGAAAGAGGGATCGTACGACTTTGAGGCGAACAAGTCGTTGCTTAAAT
TGTACCTGCTCTATCCCCCGCTCGCCAATAATGAAAATGTGGAGACGGGC
CTTTGCTCTTCCATACGCGACACCATCCAAGACTGCTCCTCTATCAGGAC
CTGAAAGCAACTCAAGTATGGCAAATGCGAATCCTGGGATAAGCACGGGT
TTGCCCAGACCATCTTCTTACAACAGTGTTCATAGCAATGTCCTCGGTGA
TGGCCTCTACACGCAGGAGAAAGTGAAGCATTTGGAGGAGTACTTGCAGC
TGCAGATGCAACCCCGGAAAGATCATATTGACAGTCCACGCTGCCACTTA
CAAAGCGGTAGATAAGGCTCATGTCTCTGACGGCGTTGGATTGAGTGGAG
ATGAGCTTGACAGCTTCCTTACGGCCAATACCCCTGGGTTGGTGGCCAAG
GTGGAGGTAGACCGGGTAATTTTTGCTCCTAATAAAGAAAATCAACCGTG
GGTTCGAAAATACAAAGAGAAAGTGGATTTACAAAATATGCTTGGTATCT
TGAACCGATTGGCAGCGTGAGAAAACGTCCTGACCATAAAGGATGCAGCG
GAGGCCCTGGAAACGGCAAGATATGCAGATTTTTGGTCCATTCTCAACAG
CAGAGCGGCAGTTTTTTTAGCTATCCCTGAGTGGAAAGACGACATTCGAA
AAAATTTTGCTAAAAGCGTTACTGAATCTTCCGGCGACGGACTTTACCCT
TCTGCTTTACATCCTTCCTGAGAAGCTTCAGACTGATGTGAAAGAGGGAT
CGTACGACTTTGAGGCGAACAAGTCGTTGCTTAAATTGTACCTGCTCTAT
CCCCCGCTCGCCAATAATGAAAATGTGGAGACGGGCCTTTGCTCTTCCAT
ACGCGACACCATCCAAGACTGCTCCTCTATCAGGACCTGAAAGCAACTCA
AGTATGGCAAATGCGAATCCTGGGATAAGCACGGGTTTGCCCAGACCATC
TTCTTACAACAGTGTTCATAGCAATGTCCTCGGTGATGGCCTCTACACGC
AGGAGAAAGTGAAGCATTTGGAGGAGTACTTGCAGCTGCAGATGCAACCC
CGGAAAGATCATATTGACAGTCCACGCTGCCACTTACAAAGCGGTAGATA
AGGCTCATGTCTCTGACGGCGTTGGATTGAGTGGAGATGAGCTTGACAGC
TTCCTTACGGCCAATACCCCTGGGTTGGTGGCCAAGGTGGAGGTAGACCG
GGTAATTTTTGCTCCTAATAAAGAAAATCAACCGTGGGTTCGAAAATACA
AAGAGAAAGTGGATTTACAAAATATGCTTGGTATCTTGAACCGATTGGCA
GCGTGAGAAAACGTCCTGACCATAAAGGATGCAGCGGAGGCCCTGGAAAC
GGCAAGATATGCAGATTTTTGGTCCATTCTCAACAGCAGAGCGGCAGTTT
TTTTAGCTATCCCTGAGTGGAAAGACGACATTCGAAAAAATTTTGCTAAA
AGCGTTACTGAATCTTCCGGCGACGGACTTTACCCTTCTGCTTTACATCC
TTCCTGAGAAGCTTCAGACTGATGTGAAAGAGGGATCGTACGACTTTGAG
GCGAACAAGTCGTTGCTTAAATTGTACCTGCTCTATCCCCCGCTCGCCAA
TAATGAAAATGTGGAGACGGGCCTTTGCTCTTCCATACGCGACACCATCC
AAGACTGCTCCTCTATCAGGACCTGAAAGCAACTCAAGTATGGCAAATGC
GAATCCTGGGATAAGCACGGGTTTGCCCAGACCATCTTCTTACAACAGTG
TTCATAGCAATGTCCTCGGTGATGGCCTCTACACGCAGGAGAAAGTGAAG
CATTTGGAGGAGTACTTGCAGCTGCAGATGCAACCCCGGAAAGATCATAT
TGACAGTCCACGCTGCCACTTACAAAGCGGTAGATAAGGCTCATGTCTCT
GACGGCGTTGGATTGAGTGGAGATGAGCTTGACAGCTTCCTTACGGCCAA
TACCCCTGGGTTGGTGGCCAAGGTGGAGGTAGACCGGGTAATTTTTGCTC
CTAATAAAGAAAATCAACCGTGGGTTCGAAAATACAAAGAGAAAGTGGAT
TTACAAAATATGCTTGGTATCTTGAACCGATTGGCAGCGTGAGAAAACGT
CCTGACCATAAAGGATGCAGCGGAGGCCCTGGAAACGGCAAGATATGCAG
ATTTTTGGTCCATTCTCAACAGCAGAGCGGCAGTTTTTTTAGCTATCCCT
GAGTGGAAAGACGACATTCGAAAAAATTTTGCTAAAAGCGTTACTGAATC
TTCCGGCGACGGACTTTACCCTTCTGCTTTACATCCTTCCTGAGAAGCTT
CAGACTGATGTGAAAGAGGGATCGTACGACTTTGAGGCGAACAAGTCGTT
GCTTAAATTGTACCTGCTCTATCCCCCGCTCGCCAATAATGAAAATGTGG
AGACGGGCCTTTGCTCTTCCATACGCGACACCATCCAAGACTGCTCCTCT
ATCAGGACCTGAAAGCAACTCAAGTATGGCAAATGCGAATCCTGGGATAA
GCACGGGTTTGCCCAGACCATCTTCTTACAACAGTGTTCATAGCAATGTC
CTCGGTGATGGCCTCTACACGCAGGAGAAAGTGAAGCATTTGGAGGAGTA
CTTGCAGCTGCAGATGCAACCCCGGAAAGATCATATTGACAGTCCACGCT
GCCACTTACAAAGCGGTAGATAAGGCTCATGTCTCTGACGGCGTTGGATT
GAGTGGAGATGAGCTTGACAGCTTCCTTACGGCCAATACCCCTGGGTTGG
TGGCCAAGGTGGAGGTAGACCGGGTAATTTTTGCTCCTAATAAAGAAAAT
CAACCGTGGGTTCGAAAATACAAAGAGAAAGTGGATTTACAAAATATGCT
TGGTATCTTGAACCGATTGGCAGCGTGAGAAAACGTCCTGACCATAAAGG
ATGCAGCGGAGGCCCTGGAAACGGCAAGATATGCAGATTTTTGGTCCATT
CTCAACAGCAGAGCGGCAGTTTTTTTAGCTATCCCTGAGTGGAAAGACGA
CATTCGAAAAAATTTTGCTAAAAGCGTTACTGAATCTTCCGGCGACGGAC
TTTACCCTTCTGCTTTACATCCTTCCTGAGAAGCTTCAGACTGATGTGAA
AGAGGGATCGTACGACTTTGAGGCGAACAAGTCGTTGCTTAAATTGTACC
TGCTCTATCCCCCGCTCGCCAATAATGAAAATGTGGAGACGGGCCTTTGC
TCTTCCATACGCGACACCATCCAAGACTGCTCCTCTATCAGGACCTGAAA
GCAACTCAAGTATGGCAAATGCGAATCCTGGGATAAGCACGGGTTTGCCC
AGACCATCTTCTTACAACAGTGTTCATAGCAATGTCCTCGGTGATGGCCT
CTACACGCAGGAGAAAGTGAAGCATTTGGAGGAGTACTTGCAGCTGCAGA
TGCAACCCCGGAAAGA back to top
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