EWM30203.1, cds459 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30203.1 vs. NCBI_GenBank
Match: gi|585112862|gb|EWM30203.1| (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana]) HSP 1 Score: 530.02 bits (1364), Expect = 0.000e+0 Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0
Query: 1 MQPRKEAFALPYATPSKTAPLSGPESNSSMANANPGISTGLPRPSSYNSVHSNVLGDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQNMLGILNRLAA 261
MQPRKEAFALPYATPSKTAPLSGPESNSSMANANPGISTGLPRPSSYNSVHSNVLGDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQNMLGILNRLAA
Sbjct: 1 MQPRKEAFALPYATPSKTAPLSGPESNSSMANANPGISTGLPRPSSYNSVHSNVLGDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQNMLGILNRLAA 261
BLAST of EWM30203.1 vs. NCBI_GenBank
Match: gi|299470826|emb|CBN78649.1| (eukaryotic translation initiation factor 3 k subunit [Ectocarpus siliculosus]) HSP 1 Score: 135.576 bits (340), Expect = 6.575e-36 Identity = 72/188 (38.30%), Postives = 113/188 (60.11%), Query Frame = 0
Query: 76 VKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSIL--NSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQNMLGILNRLAA 261
VK G+YDFEANK+LLKLY +P L E V +L KAL+N+P+TDF L+YI+P L E V ++K AA++LETA++ DFW A+ ++P +K +R I+ A T++ + ++ + L G EL SF+ AN + A + + FA N+ NQ +K+KE V+ +L +++L++
Sbjct: 7 VKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSS 194
BLAST of EWM30203.1 vs. NCBI_GenBank
Match: gi|470294943|ref|XP_004344531.1| (hypothetical protein CAOG_06910 [Capsaspora owczarzaki ATCC 30864] >gi|765556106|gb|KJE96610.1| hypothetical protein CAOG_006910 [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 129.028 bits (323), Expect = 9.834e-33 Identity = 71/203 (34.98%), Postives = 114/203 (56.16%), Query Frame = 0
Query: 56 GDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQNMLGILNR 258
G Y ++ LE+Y+Q QV +G+YDFE+N +LL+LY +P N + +LLK LL LPA D+ L++L +KLQ DE++ I AA LE A++ FWS++N+ + +P + D+ RK I + + + +++D+ +S + L DSF+ A VE D V F NK+NQ + EK+ N+ +L +
Sbjct: 46 GTDRYNPTHIERLEKYIQEQVTDGTYDFESNLALLRLYQFHPTKVNADASAQVLLKMLLVLPAGDYASSLFLLSDKLQADESIKNIVAAAHHLEAAQFIQFWSLVNATPKIKQLMPSFADEARKFIAHILSVSAQSMDQLLLSKFLDLQAGAFDSFVAAQGWA----VERDAVSFGVNKDNQAKSKNISEKIPFNNLTKLLGQ 244
BLAST of EWM30203.1 vs. NCBI_GenBank
Match: gi|470429505|ref|XP_004338209.1| (eukaryotic translation initiation factor 3 subunit k, putative [Acanthamoeba castellanii str. Neff] >gi|440795055|gb|ELR16196.1| eukaryotic translation initiation factor 3 subunit k, putative [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 110.538 bits (275), Expect = 7.359e-26 Identity = 72/211 (34.12%), Postives = 116/211 (54.98%), Query Frame = 0
Query: 52 SNVLGDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSIL--NSRAAVFLA-IPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQNMLGILNRL 259
+ VL G Y+ + + L+ YLQ Q+ + SYDFEAN +LLK++ P + + V+ +L+KAL+NLP DF L LY+LPE +E V +K + LETA++ FW++ +S +V L P +++ I+ ++V Y++V ++ V L+G LD F+ A G K E D V + NQ K E++D + + I + L
Sbjct: 10 TEVLKKGRYSLDSLPQLKAYLQEQIDQRSYDFEANLALLKIFQFNPSHIDIDVVQKVLIKALMNLPHMDFPLSLYVLPEAAHQNEGVAALKKVSNLLETAQFTGFWTLFEEDSATSVLLKNFPGFREAIQSFAVSVLTVAYQSVPVDVLASAVHLNGAALDEFV-AKQEGW--KTEDDLVTLPVTELNQARQIKTTEQLDRKKVANIFSVL 217
BLAST of EWM30203.1 vs. NCBI_GenBank
Match: gi|545708679|ref|XP_005706651.1| (translation initiation factor [Galdieria sulphuraria] >gi|452823118|gb|EME30131.1| translation initiation factor [Galdieria sulphuraria]) HSP 1 Score: 108.997 bits (271), Expect = 2.220e-25 Identity = 68/186 (36.56%), Postives = 103/186 (55.38%), Query Frame = 0
Query: 68 LEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQNML 253
LE Y++ Q EG+YD +AN + LKLY YP N V ILLKAL LP++DF LY+L EK Q + V T+ A+ALE+ + DFW+ L + + +P +D R+ +L V + TY + + + + LS D+L FL N G+ + D + F +ENQP + E++ L+ +L
Sbjct: 25 LERYVEAQCLEGAYDGDANLACLKLYQFYPEKTNFSIVSKILLKALAALPSSDFISCLYLLGEKTQREVPVATVISWADALESGNFVDFWNSLQNNKDIIKGLPGIEDSFREFMLAVISRTYFRIHLSVLQKLLCLSQDDLIRFL--NKHGM-TNITNDILQFPSTEENQPRPKTIGEQLPLRKVL 207
BLAST of EWM30203.1 vs. NCBI_GenBank
Match: gi|116787119|gb|ABK24382.1| (unknown [Picea sitchensis]) HSP 1 Score: 107.457 bits (267), Expect = 1.199e-24 Identity = 61/188 (32.45%), Postives = 103/188 (54.79%), Query Frame = 0
Query: 60 YTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDR-----VIFAPNKENQPWVRK 242
Y + + LE Y+Q QV +Y+ +AN LL+LY P + + V IL+KAL+ +PA DF L ++++PEKLQ E +T+ + LETAR+ +FW A+ +P ++ I+K + V + TY+ + + +++ V + G LD FL A+ +E ++F PN+ N P ++K
Sbjct: 28 YNPDLLPDLEAYVQEQVMSNTYNLDANLCLLRLYQFEPARMSMQIVARILVKALMAMPAPDFNLCMFLIPEKLQMMEPFITLITLSHYLETARFREFWDEAPRNRAILEVVPGFEKAIQKYAIHVLSLTYQKLPRHVLAEAVNVEGLSLDKFLEAHINEHGWSIEKGHGKGQLIVFPPNEYNHPELKK 215
BLAST of EWM30203.1 vs. NCBI_GenBank
Match: gi|1026275259|gb|OAD08242.1| (hypothetical protein MUCCIDRAFT_154865, partial [Mucor circinelloides f. lusitanicus CBS 277.49]) HSP 1 Score: 106.686 bits (265), Expect = 1.462e-24 Identity = 64/166 (38.55%), Postives = 94/166 (56.63%), Query Frame = 0
Query: 48 NSVHSNVLGDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFW-SILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFL 212
+++ + + G Y E V LEEYL Q + G YD EAN ++LKLY P LA + IL+KAL +PA DF L LY+L E E++ + + + LE ARYA FW S L AV +P ++ +IR +I V A +Y+ ++ A ++ +GL+GD D F
Sbjct: 8 DNIATMINGVERYNPENVNVLEEYLSKQCESGEYDLEANLAILKLYQFNPALAKEPVIVKILVKALTAIPAPDFNLCLYLLAEHSHL-ESIEKLTELQQLLEQARYAKFWQSDLKPWTAV---VPSFETEIRLVIARVMAMSYQTINAASLAANLGLTGDAFDKFC 169
BLAST of EWM30203.1 vs. NCBI_GenBank
Match: gi|727149418|emb|CEG68224.1| (Putative Eukaryotic translation initiation factor 3 subunit K [Rhizopus microsporus]) HSP 1 Score: 105.916 bits (263), Expect = 3.602e-24 Identity = 61/159 (38.36%), Postives = 89/159 (55.97%), Query Frame = 0
Query: 56 GDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTA 214
G Y E + LE YL Q + G YD EAN ++LKLY P LA V IL+KAL LPA DF L LY+L E Q + ++ ++ + + LE ARY FW + A +P ++ +IR++I V A +Y+ ++ + +S +GL GDE D F +
Sbjct: 14 GVERYNPENIDALENYLNHQCENGQYDCEANLAILKLYQFNPQLAKEPIVAKILVKALTALPAPDFNLCLYLLAEHAQFN-SIESLTELQQLLEQARYEKFWQ--SDLTAWTKIVPNFETEIRQVIARVIAMSYQTINTSTLSGYLGLKGDEFDKFCAS 169
BLAST of EWM30203.1 vs. NCBI_GenBank
Match: gi|727136202|emb|CEG80830.1| (Putative Eukaryotic translation initiation factor 3 subunit K [Rhizopus microsporus]) HSP 1 Score: 105.531 bits (262), Expect = 3.878e-24 Identity = 61/159 (38.36%), Postives = 89/159 (55.97%), Query Frame = 0
Query: 56 GDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTA 214
G Y E + LE YL Q + G YD EAN ++LKLY P LA V IL+KAL LPA DF L LY+L E Q +++ ++ + + LE ARY FW + A +P ++ +IR++I V A +Y+ ++ + +S +GL GDE D F +
Sbjct: 14 GVERYNPENIDALENYLNHQCENGQYDCEANLAILKLYQFNPQLAKEPIVAKILVKALTALPAPDFNLCLYLLAEHAQF-KSIESLTELQQLLEQARYEKFWQ--SDLTAWTKVVPNFETEIRQVIAQVIAMSYQTINTSTLSGYLGLKGDEFDKFCAS 169
BLAST of EWM30203.1 vs. NCBI_GenBank
Match: gi|1178049301|gb|ORE04946.1| (ARM repeat-containing protein [Rhizopus microsporus var. microsporus]) HSP 1 Score: 105.531 bits (262), Expect = 4.264e-24 Identity = 61/159 (38.36%), Postives = 89/159 (55.97%), Query Frame = 0
Query: 56 GDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTA 214
G Y E + LE YL Q + G YD EAN ++LKLY P LA V IL+KAL LPA DF L LY+L E Q +++ ++ + + LE ARY FW + A +P ++ +IR++I V A +Y+ ++ + +S +GL GDE D F +
Sbjct: 14 GVERYNPENIDALENYLNHQCENGQYDCEANLAILKLYQFNPQLAKEPIVAKILVKALTALPAPDFNLCLYLLAEHAQF-KSIESLTELQQLLEQARYEKFWQ--SDLTAWTKVVPNFETEIRQVIARVIAMSYQTINASTLSGYLGLKGDEFDKFCAS 169 The following BLAST results are available for this feature:
BLAST of EWM30203.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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