EWM30203.1, cds459 (CDS) Nannochloropsis gaditana

Overview
NameEWM30203.1
Unique Namecds459
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1147452..1147468 -
Alignment locationCM002455.1:1147033..1147240 -
Alignment locationCM002455.1:1146845..1146940 -
Alignment locationCM002455.1:1146595..1146678 -
Alignment locationCM002455.1:1146365..1146497 -
Alignment locationCM002455.1:1145995..1146242 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30203.1
ProductWinged helix-turn-helix transcription repressor
Orig transcript idgnl|cribi|Naga_100003g20.1720.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1147452..1147468 -
CM002455.1supercontigCM002455.1:1147033..1147240 -
CM002455.1supercontigCM002455.1:1146845..1146940 -
CM002455.1supercontigCM002455.1:1146595..1146678 -
CM002455.1supercontigCM002455.1:1146365..1146497 -
CM002455.1supercontigCM002455.1:1145995..1146242 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0005488binding
GO:0043022ribosome binding
GO:0003743translation initiation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006446regulation of translational initiation
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005852eukaryotic translation initiation factor 3 complex
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR009374eIF3k
IPR011991WHTH_DNA-bd_dom
IPR016020Transl_init_fac_sub12_N_euk
Homology
BLAST of EWM30203.1 vs. NCBI_GenBank
Match: gi|585112862|gb|EWM30203.1| (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana])

HSP 1 Score: 530.02 bits (1364), Expect = 0.000e+0
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0
Query:    1 MQPRKEAFALPYATPSKTAPLSGPESNSSMANANPGISTGLPRPSSYNSVHSNVLGDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQNMLGILNRLAA 261
            MQPRKEAFALPYATPSKTAPLSGPESNSSMANANPGISTGLPRPSSYNSVHSNVLGDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQNMLGILNRLAA
Sbjct:    1 MQPRKEAFALPYATPSKTAPLSGPESNSSMANANPGISTGLPRPSSYNSVHSNVLGDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQNMLGILNRLAA 261          
BLAST of EWM30203.1 vs. NCBI_GenBank
Match: gi|299470826|emb|CBN78649.1| (eukaryotic translation initiation factor 3 k subunit [Ectocarpus siliculosus])

HSP 1 Score: 135.576 bits (340), Expect = 6.575e-36
Identity = 72/188 (38.30%), Postives = 113/188 (60.11%), Query Frame = 0
Query:   76 VKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSIL--NSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQNMLGILNRLAA 261
            VK G+YDFEANK+LLKLY  +P L   E V  +L KAL+N+P+TDF  L+YI+P  L   E V ++K AA++LETA++ DFW         A+  ++P +K  +R  I+   A T++   + ++   + L G EL SF+ AN   + A  +  +  FA N+ NQ   +K+KE V+   +L  +++L++
Sbjct:    7 VKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSS 194          
BLAST of EWM30203.1 vs. NCBI_GenBank
Match: gi|470294943|ref|XP_004344531.1| (hypothetical protein CAOG_06910 [Capsaspora owczarzaki ATCC 30864] >gi|765556106|gb|KJE96610.1| hypothetical protein CAOG_006910 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 129.028 bits (323), Expect = 9.834e-33
Identity = 71/203 (34.98%), Postives = 114/203 (56.16%), Query Frame = 0
Query:   56 GDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQNMLGILNR 258
            G   Y    ++ LE+Y+Q QV +G+YDFE+N +LL+LY  +P   N +    +LLK LL LPA D+   L++L +KLQ DE++  I  AA  LE A++  FWS++N+   +   +P + D+ RK I  + + + +++D+  +S  + L     DSF+ A        VE D V F  NK+NQ   +   EK+   N+  +L +
Sbjct:   46 GTDRYNPTHIERLEKYIQEQVTDGTYDFESNLALLRLYQFHPTKVNADASAQVLLKMLLVLPAGDYASSLFLLSDKLQADESIKNIVAAAHHLEAAQFIQFWSLVNATPKIKQLMPSFADEARKFIAHILSVSAQSMDQLLLSKFLDLQAGAFDSFVAAQGWA----VERDAVSFGVNKDNQAKSKNISEKIPFNNLTKLLGQ 244          
BLAST of EWM30203.1 vs. NCBI_GenBank
Match: gi|470429505|ref|XP_004338209.1| (eukaryotic translation initiation factor 3 subunit k, putative [Acanthamoeba castellanii str. Neff] >gi|440795055|gb|ELR16196.1| eukaryotic translation initiation factor 3 subunit k, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 110.538 bits (275), Expect = 7.359e-26
Identity = 72/211 (34.12%), Postives = 116/211 (54.98%), Query Frame = 0
Query:   52 SNVLGDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSIL--NSRAAVFLA-IPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQNMLGILNRL 259
            + VL  G Y+ + +  L+ YLQ Q+ + SYDFEAN +LLK++   P   + + V+ +L+KAL+NLP  DF L LY+LPE    +E V  +K  +  LETA++  FW++   +S  +V L   P +++ I+   ++V    Y++V    ++  V L+G  LD F+ A   G   K E D V     + NQ    K  E++D + +  I + L
Sbjct:   10 TEVLKKGRYSLDSLPQLKAYLQEQIDQRSYDFEANLALLKIFQFNPSHIDIDVVQKVLIKALMNLPHMDFPLSLYVLPEAAHQNEGVAALKKVSNLLETAQFTGFWTLFEEDSATSVLLKNFPGFREAIQSFAVSVLTVAYQSVPVDVLASAVHLNGAALDEFV-AKQEGW--KTEDDLVTLPVTELNQARQIKTTEQLDRKKVANIFSVL 217          
BLAST of EWM30203.1 vs. NCBI_GenBank
Match: gi|545708679|ref|XP_005706651.1| (translation initiation factor [Galdieria sulphuraria] >gi|452823118|gb|EME30131.1| translation initiation factor [Galdieria sulphuraria])

HSP 1 Score: 108.997 bits (271), Expect = 2.220e-25
Identity = 68/186 (36.56%), Postives = 103/186 (55.38%), Query Frame = 0
Query:   68 LEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQNML 253
            LE Y++ Q  EG+YD +AN + LKLY  YP   N   V  ILLKAL  LP++DF   LY+L EK Q +  V T+   A+ALE+  + DFW+ L +   +   +P  +D  R+ +L V + TY  +  + +   + LS D+L  FL  N  G+   +  D + F   +ENQP  +   E++ L+ +L
Sbjct:   25 LERYVEAQCLEGAYDGDANLACLKLYQFYPEKTNFSIVSKILLKALAALPSSDFISCLYLLGEKTQREVPVATVISWADALESGNFVDFWNSLQNNKDIIKGLPGIEDSFREFMLAVISRTYFRIHLSVLQKLLCLSQDDLIRFL--NKHGM-TNITNDILQFPSTEENQPRPKTIGEQLPLRKVL 207          
BLAST of EWM30203.1 vs. NCBI_GenBank
Match: gi|116787119|gb|ABK24382.1| (unknown [Picea sitchensis])

HSP 1 Score: 107.457 bits (267), Expect = 1.199e-24
Identity = 61/188 (32.45%), Postives = 103/188 (54.79%), Query Frame = 0
Query:   60 YTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDR-----VIFAPNKENQPWVRK 242
            Y  + +  LE Y+Q QV   +Y+ +AN  LL+LY   P   + + V  IL+KAL+ +PA DF L ++++PEKLQ  E  +T+   +  LETAR+ +FW       A+   +P ++  I+K  + V + TY+ + +  +++ V + G  LD FL A+       +E        ++F PN+ N P ++K
Sbjct:   28 YNPDLLPDLEAYVQEQVMSNTYNLDANLCLLRLYQFEPARMSMQIVARILVKALMAMPAPDFNLCMFLIPEKLQMMEPFITLITLSHYLETARFREFWDEAPRNRAILEVVPGFEKAIQKYAIHVLSLTYQKLPRHVLAEAVNVEGLSLDKFLEAHINEHGWSIEKGHGKGQLIVFPPNEYNHPELKK 215          
BLAST of EWM30203.1 vs. NCBI_GenBank
Match: gi|1026275259|gb|OAD08242.1| (hypothetical protein MUCCIDRAFT_154865, partial [Mucor circinelloides f. lusitanicus CBS 277.49])

HSP 1 Score: 106.686 bits (265), Expect = 1.462e-24
Identity = 64/166 (38.55%), Postives = 94/166 (56.63%), Query Frame = 0
Query:   48 NSVHSNVLGDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFW-SILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFL 212
            +++ + + G   Y  E V  LEEYL  Q + G YD EAN ++LKLY   P LA    +  IL+KAL  +PA DF L LY+L E     E++  + +  + LE ARYA FW S L    AV   +P ++ +IR +I  V A +Y+ ++ A ++  +GL+GD  D F 
Sbjct:    8 DNIATMINGVERYNPENVNVLEEYLSKQCESGEYDLEANLAILKLYQFNPALAKEPVIVKILVKALTAIPAPDFNLCLYLLAEHSHL-ESIEKLTELQQLLEQARYAKFWQSDLKPWTAV---VPSFETEIRLVIARVMAMSYQTINAASLAANLGLTGDAFDKFC 169          
BLAST of EWM30203.1 vs. NCBI_GenBank
Match: gi|727149418|emb|CEG68224.1| (Putative Eukaryotic translation initiation factor 3 subunit K [Rhizopus microsporus])

HSP 1 Score: 105.916 bits (263), Expect = 3.602e-24
Identity = 61/159 (38.36%), Postives = 89/159 (55.97%), Query Frame = 0
Query:   56 GDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTA 214
            G   Y  E +  LE YL  Q + G YD EAN ++LKLY   P LA    V  IL+KAL  LPA DF L LY+L E  Q + ++ ++ +  + LE ARY  FW   +   A    +P ++ +IR++I  V A +Y+ ++ + +S  +GL GDE D F  +
Sbjct:   14 GVERYNPENIDALENYLNHQCENGQYDCEANLAILKLYQFNPQLAKEPIVAKILVKALTALPAPDFNLCLYLLAEHAQFN-SIESLTELQQLLEQARYEKFWQ--SDLTAWTKIVPNFETEIRQVIARVIAMSYQTINTSTLSGYLGLKGDEFDKFCAS 169          
BLAST of EWM30203.1 vs. NCBI_GenBank
Match: gi|727136202|emb|CEG80830.1| (Putative Eukaryotic translation initiation factor 3 subunit K [Rhizopus microsporus])

HSP 1 Score: 105.531 bits (262), Expect = 3.878e-24
Identity = 61/159 (38.36%), Postives = 89/159 (55.97%), Query Frame = 0
Query:   56 GDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTA 214
            G   Y  E +  LE YL  Q + G YD EAN ++LKLY   P LA    V  IL+KAL  LPA DF L LY+L E  Q  +++ ++ +  + LE ARY  FW   +   A    +P ++ +IR++I  V A +Y+ ++ + +S  +GL GDE D F  +
Sbjct:   14 GVERYNPENIDALENYLNHQCENGQYDCEANLAILKLYQFNPQLAKEPIVAKILVKALTALPAPDFNLCLYLLAEHAQF-KSIESLTELQQLLEQARYEKFWQ--SDLTAWTKVVPNFETEIRQVIAQVIAMSYQTINTSTLSGYLGLKGDEFDKFCAS 169          
BLAST of EWM30203.1 vs. NCBI_GenBank
Match: gi|1178049301|gb|ORE04946.1| (ARM repeat-containing protein [Rhizopus microsporus var. microsporus])

HSP 1 Score: 105.531 bits (262), Expect = 4.264e-24
Identity = 61/159 (38.36%), Postives = 89/159 (55.97%), Query Frame = 0
Query:   56 GDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSILNSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTA 214
            G   Y  E +  LE YL  Q + G YD EAN ++LKLY   P LA    V  IL+KAL  LPA DF L LY+L E  Q  +++ ++ +  + LE ARY  FW   +   A    +P ++ +IR++I  V A +Y+ ++ + +S  +GL GDE D F  +
Sbjct:   14 GVERYNPENIDALENYLNHQCENGQYDCEANLAILKLYQFNPQLAKEPIVAKILVKALTALPAPDFNLCLYLLAEHAQF-KSIESLTELQQLLEQARYEKFWQ--SDLTAWTKVVPNFETEIRQVIARVIAMSYQTINASTLSGYLGLKGDEFDKFCAS 169          
The following BLAST results are available for this feature:
BLAST of EWM30203.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112862|gb|EWM30203.1|0.000e+0100.00Winged helix-turn-helix transcription repressor [N... [more]
gi|299470826|emb|CBN78649.1|6.575e-3638.30eukaryotic translation initiation factor 3 k subun... [more]
gi|470294943|ref|XP_004344531.1|9.834e-3334.98hypothetical protein CAOG_06910 [Capsaspora owczar... [more]
gi|470429505|ref|XP_004338209.1|7.359e-2634.12eukaryotic translation initiation factor 3 subunit... [more]
gi|545708679|ref|XP_005706651.1|2.220e-2536.56translation initiation factor [Galdieria sulphurar... [more]
gi|116787119|gb|ABK24382.1|1.199e-2432.45unknown [Picea sitchensis][more]
gi|1026275259|gb|OAD08242.1|1.462e-2438.55hypothetical protein MUCCIDRAFT_154865, partial [M... [more]
gi|727149418|emb|CEG68224.1|3.602e-2438.36Putative Eukaryotic translation initiation factor ... [more]
gi|727136202|emb|CEG80830.1|3.878e-2438.36Putative Eukaryotic translation initiation factor ... [more]
gi|1178049301|gb|ORE04946.1|4.264e-2438.36ARM repeat-containing protein [Rhizopus microsporu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna459rna459Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications