rna4587, rna4587 (mRNA) Nannochloropsis gaditana

Overview
Namerna4587
Unique Namerna4587
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length925
Alignment locationCM002463.1:973028..974697 +

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF866, eukaryotic
Orig transcript idgnl|cribi|Naga_100014g65.9275.mrna
Orig protein idgnl|cribi|Naga_100014g65.9275
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:973028..974697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100014g65gene4425Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4587rna4587-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26098.1cds4575Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4587 ID=rna4587|Name=rna4587|organism=Nannochloropsis gaditana|type=mRNA|length=925bp
CAGTTTCTAATTCAAATATAATCGAATCACGCTTCAGGCGCACACGCCAT
TGAAATCTTTCCAGCGTTCTTCCAGGAGCTCGTCATTTTCCGGGGAGTGC
ATTATGGACGGTTCGGGCAGGGACCACATGCATGCCGCCATCCAAGAAGA
CCAAAGAGAGCATCCGCAGTGCTCCTACTCTACAGTGCGCTCCCATTTCT
CTTCCTTTCTCAATGGGAGTAGTAAGGCCGAGACATTAACAAAAATTATT
CGCAATTGCCAAGGAGAAGCACCTGTGGAGATATACAGGCACAAGCAGGA
AAGCGATGAGGCCTCGGAGCGCGGAGAGGGGCTTTTCCGCGAGTACCCAC
ACCAACGTGGTCTCATGCCCCCATTGCCATGGCCCGGTGTGGGATCTGAG
GGCAGTGTAAGAGGCGATGTAGAGCATGAGGACAGGTTGGGGCCTCGGGG
CTCGGGAGCGGAGGGCGTTTTGGCGCACATGTTCGGGCACATGCTGGATG
GAGCTTTGCAAAACTTTAGTGGCGGGCGCTGGGATGGTAATAGTGCATTC
GGAGATCTGTTGGGCAAGGTTTTGCCCCCCCTTTTTCCTCCCTCGCACTA
CGATGAAGGCTGCCAGCGGCAAGAACCATATCGCGTCCCGCGACCCCCCC
CATCTCTTCCCCCGGGGCCGCCACCAAGGGGGTTCGGCGAGCGACGAGAA
GGGCGACGTGACAGAGATTTAGAGGGGCACAGCCATGTTCTTGACAATGC
TTGGCAAAGGCGTGGGTGGATTGATTTGTTGCAGATGGCTCCCTAACCCC
GGGATTATGTATCAAACGAAGAGGATGATGTACAAACGCGGGTACCATAA
TTGCTCGCTGGTACGGCTGTTACCCATTGCTTACGACAGTGCTTCTGTAC
ATCTCTCATTCACATGAATCTTTCT
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protein sequence of rna4587

>rna4587-protein ID=rna4587-protein|Name=rna4587|organism=Nannochloropsis gaditana|type=polypeptide|length=156bp
MPVFALQLKAELEGVSRIETTGRYCVDLSKDGECKRGVFIDMSESVAMAD
SRGTCHMQIKLPGMTKPANLTILETAPYTTSDSGAFQTVARIEARGVDVE
AWRVRDDFVVVSEGGTRFEAANLVDGDYTEYDEEHNQAVSVLEVATNVVV
GKGPKR
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mRNA from alignment at CM002463.1:973028..974697+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4587 ID=rna4587|Name=rna4587|organism=Nannochloropsis gaditana|type=mRNA|length=1670bp|location=Sequence derived from alignment at CM002463.1:973028..974697+ (Nannochloropsis gaditana)
CTCCCGAGCCCCGAGGCCCCAACCTGTCCTCATGCTCTACATCGCCTCTT
ACACTGCCCTCAGATCCCACACCGGGCCATGGCAATGGGGGCATGAGACC
ACGTTGGTGTGGGTACTCGCGGAAAAGCCCCTCTCCGCGCTCCGAGGCCT
CATCGCTTTCCTGCTTGTGCCTGTATATCTCCACAGGTGCTTCTCCTGCG
CCGTGTGATGGAAAGAGTGACATTCAAACTTCTCTGTTACGGGAATACTA
ACGCAACATGTGTTCTCATATGCTCCTCATACACTCATCGCTCTTCAGTA
CATTACACGCGCGCCGCCCCCCGGGATGATGTTCGTTAAACACACCTTGG
CAATTGCGAATAATTTTTGTTAATGTCTCGGCCTTACTACTCCCattgag
aaaggaagagaaatggGAGCGCACTGTAGAGTAGGAGCACTGCGGATGCT
CTCTTTGGTCTTCTTGGATGGCGGCATGCATGTGGTCCCTGCCCGAACCG
TCCATAATGCACTCCCCGGAAAATGACGAGCTCCTGGAAGAACGCTGGAA
AGATTTCAATGGCGTGTGCGCCTGAAGCGTGATTCGATTATATTTGAATT
AGAAACTGTGAAAACTGAGAGCGTGCCGGCAGTTCAGGGGCCCGCTATTC
CGGTTAAGTATCATCGCTCCAGCGCCACGTCCTGATCGACTTCTAGATTG
CCTTACTCGCACACTTTCGCTAAGGTTTTTCTCTTTCATAATAGCTTGAG
ATTTGCTCTGCCAGCTGCAGCAGAGTTGTCGCACTTTGAGAGACAAGCTC
GCAAATAATTTCCCCTTCAGCTACCTCAGgccttccctgtcctccaaGCA
TTCCAAGCAGCCCCGATATCCCCCAGATATGCATATACCCGGTATTCGAA
GCATTTTTCATTCAACtcatcatttttttccttgtctgAACAGGAGGCGG
TAGAATTCGGACTGCAAACTGAAATCAAGAAATATTACCATACGTGTGCA
CTCCATTACTTCCATCTCATACATGCCCGTATTCGCCTTACAACTCAAGG
CTGAACTTGAAGGGGTTTCAAGAATCGAAACAACAGGGCGCTACTGCGTG
GACTTGAGCAAAGATGGAGAATGCAAACGAGGTGTATTCATCGACATGTC
CGAGTCTGTGGCAATGGCAGACAGCCGCGGAACCTGTCACATGCAAATCA
AGTTGCCTGGCATGACAAAACCCGCCAACTTGACTATCCTGGAAACAGCT
CCGTACACAACAAGCGACAGCGGAGCTTTTCAAACAGTAGCGCGTATAGA
GGCCCGAGGCGTGGATGTGGAGGCTTGGCGAGTTCGGGATGACTTTGTGG
TTGTatcagagggagggactcgtTTTGAGGCGGCGAACCTGGTTGACGGA
GACTACACAGAATACGACGAGGAGCATAACCAGGCGGTCTCAGTATTGGA
GGTGGCGACAAACGTAGTTGTTGGGAAAGGCCCAAAAAGGTGAAGCAGGC
GTGGCGCGATTATATACGCAGAAAGTCGTGTATGTTCGCAACGAGAGAGC
ACTCCGTACCTAGTTTTTTGTCCATTGCTTTTTCATGACTTTGTAATTAT
AATACAGAAAGTAGTAATGTTCGATAAAAGTCATAGAATGTTACGAGAGC
ACGATGGTACATGCTACAGA
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Coding sequence (CDS) from alignment at CM002463.1:973028..974697+

>rna4587 ID=rna4587|Name=rna4587|organism=Nannochloropsis gaditana|type=CDS|length=471bp|location=Sequence derived from alignment at CM002463.1:973028..974697+ (Nannochloropsis gaditana)
ATGCCCGTATTCGCCTTACAACTCAAGGCTGAACTTGAAGGGGTTTCAAG
AATCGAAACAACAGGGCGCTACTGCGTGGACTTGAGCAAAGATGGAGAAT
GCAAACGAGGTGTATTCATCGACATGTCCGAGTCTGTGGCAATGGCAGAC
AGCCGCGGAACCTGTCACATGCAAATCAAGTTGCCTGGCATGACAAAACC
CGCCAACTTGACTATCCTGGAAACAGCTCCGTACACAACAAGCGACAGCG
GAGCTTTTCAAACAGTAGCGCGTATAGAGGCCCGAGGCGTGGATGTGGAG
GCTTGGCGAGTTCGGGATGACTTTGTGGTTGTatcagagggagggactcg
tTTTGAGGCGGCGAACCTGGTTGACGGAGACTACACAGAATACGACGAGG
AGCATAACCAGGCGGTCTCAGTATTGGAGGTGGCGACAAACGTAGTTGTT
GGGAAAGGCCCAAAAAGGTGA
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Synonyms
Publications