rna4582, rna4582 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4582
Unique Name	rna4582
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2896
Alignment location	CM002463.1:966055..968054 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100014g61.9302.mrna
Orig protein id	gnl\|cribi\|Naga_100014g61.9302
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:966055..968054 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100014g61	gene4421	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4582	rna4582-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26125.1	cds4570	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:966055..968054+
coding sequence from alignment at CM002463.1:966055..968054+

mRNA sequence

>rna4582 ID=rna4582|Name=rna4582|organism=Nannochloropsis gaditana|type=mRNA|length=2896bp
GGCGTTTGCCGGGGGCACACGCGTTTTCGTGCTCCCTTTTACTTTACGTT
GGGTTTCACTCAGTCTGACTACGTATGCGCGCGTGTAAAAGCGGAGCAGA
GTGGGGTGGCCGGGAAGGAAACCAAGAAGGAGGAGGAGAGAAGAAATCCT
GACGCGGATTGGTAGGAAATGGCGTGCCGAGCGAATTCTCTCTCCTTGGA
CCCGCCAGACATTCCATCCGCGACATTTTTGTTATGATTTGTACGAATGA
GGTGGATTTTCCAGGCATTCTTCACTTTTGTGCTCTCACGCTGACCTTCT
CCTCTCTATCCCGTGGCAGCAGGTCTGCACTTGCAAGTACCGGTGAACCG
GAAAGTGCCATTTGGCTCCACATCGACTTCAGATCAAACTTTTAGCTTGC
ACAAGCTCGAGATCGATAGGCATGCCCAAATATACTACGACGGTGGCCTC
TGGTGAAGTAGATTTGCGCATTGAGAAGGAAGGACCGGGTTCGTGGGCGC
CGAAGACCGTGTTTCAGGTGTTCGAGGAGACGGTGAAAAAGTACGGCGAC
TCCCCAGCTTTGCATTACAAGAAGGTACCGCATGGCGGCAGCCTTGCGAC
AACTGAATGGAGCAGTTATACGTGGCGCGAGTACTACGATCTCACCTTAG
AATTCTGCAAAAGTCTTTTGTCTCTAGGATTTCCTGCGCATGGTGCCATT
AATTTAATCGGTTTCAACTCCCCCGAATGGCTCATTGCCAACTGTGGCGC
TATCGCAGCCGGTGGTGTGGGAGTCGGTATTTACACGTCTAATGGCGTTG
ATGCGTGTAAATACATTACGGAGCATTCTGAGGCGGAGGTAGTGGTTGTG
GAGAACGCGAAACAGCTTGAAAAATATCTGAAGATTGCCAAAGAGCTTCC
CCGACTTAAGGCTCTTGTAATTTATAGTGGCACAGCTGAAGGCTACAAGT
GTGACGTCCCTATATACTCGTGGAAGGATTTTATGGCTCTCGGGAGCGGC
GTTAAGGATGAAGCTGTTCGCGCGCGCATCGAAGCCCAGCGGCCCGGGCA
CTGTTGCACGCTAATCTATACATCTGGCACTACGGGGCCGCCCAAGGCCG
TCATGATCTCGCACGACAATCTGACTTGGACTGTGAAGAATTTTGTGGCC
TCCTTGCCCTTCACCTTGACGTGCGAGGATCGCTCGGTCTCTTACCTTCC
CCTCTCCCACGTCGCCGCCCAGATGCTGGACATCCATTGTCCAATTGCCA
CGGGCGCCAAGATCTACTTCGCGCAGCCGGATGCGCTGCGCGGATCATTA
CCTGTCACCTTGAAGGACGTCTGTCCGACTTATTTCTTTGGGGTGCCGCG
CGTGTGGGAGAAGATCTACGAGAAGATGCAAGAAGTAGCCCGCTCGACCA
CGGGTGTCAAGCGAGCTCTTGCGCAGTGGGCCAAGGCCAAGGGACTGGAG
AAGAACCGCCGTCAGCAGTATGGGTGCGGTGGTGGTGCTCCGGTGGGATT
TGGGTGTGCCCACGCACTGGTCTTGTCAAAAGTGAAGGCGGCGCTAGGCC
TTCATCAGACCAAGATGTGCATCACGTCCGCCGCGCCCATCGCAGTCGAG
ATTCTCGAGTACTTTGCCTCCTTAGACATCCCTGTGCTAGAGCTTTTTGG
CCAGTCTGAATGCACAGGTCCTCATACGTCCAATTTCTCCTACGCGTGGA
AAATTGGCTCAATCGGGCGCGACATCCCGGGAGTCAAGACGAAGCAACAT
GCAAATATGAGCGAATTTTGCATGTACGGGCGACACATCATGATGGGTTA
CATGAAGATGGAAGATAAGACTCAGGAGGCCGTTGACAACGAGGGCTGGC
TGCATTCGGGCGACGTTGCGCAAGTTGATGCTGACGGCTTTTGGAGCATC
ACAGGCCGCATTAAAGAGCTCATTATCACAGCAGGGGGGGAGAACATTCC
TCCTGTTCTGATCGAGAACGAGATTATGTCCGCTCTCCCGGCTGTTGCCA
ATTGCATGGTTGTGGGGGATAAGAAGAAATTTTTAACTGTTCTTTTAACG
ATGAAGGCTAAGCTTGACGACCAGGGTAACCCCACGAAGGAACTGAACAA
GGAAGCGCTGGACATTGGCAAGGAAATCGGCTCGAATGCTTCGACCACTG
AGCAGGTTGCATCCGACCCTCACTGGAAAAAATATTTTGATGAGGGGTTG
AAGAAAGCGAATTCCACCGCGACATCCAATGCGCAATTTGTGCAGAAATG
GAGTGTTTTGCCCTTGGACTTCAGCGAAAAGGGAGGCGAGCTAACACCGA
CGCTCAAACTGAAGCGCTCTGTGGTTGCGGAGAAGTACGCTGACGTCATT
GCCGATATGTACAAAGCGTAGGCGATGTCACACTAGAGAGGGTGGTGAAA
CAGAATTGCGAGATTTACACCATGTAACTTTTGAAGCAATAAGAGAACAA
AATTATTCGATGGAAAAATTAGAAGTGGGGGGATCTCCAGCAGGTGTTGC
TCATTAAATCTAGGTGAGCCTTGTGGGTAGTATTCCGCCGTAGGACCCTG
TGGTAGAGGAGGGCTACGCTCTTGACCCGTTTGCATTGTATCTGGAAGAT
GCAAAGTATCGGGTCTCGTGAGGTATCGTTTGATGTCGTTTGGAAGGGAT
TTTTCAGAGGTGTCATTGCACTGACTTTAAAAAGAATTTCAGATGGAGAA
TGGAGGAAGCGACGTCAGGAAGACAAATTTATCTGCTTGACTGAAATCAC
ACACCTCGAGCTTTGAAAGCCTACTTTTAAACCCACTTATAAGCATGGAT
CCGAGAAAGAAGAGGCGAATGTGTGGTTCCGATGCAACGTTTTCACCTCT
CATTTGTGAAGTATTAAGATTTGAAATGCGCCCGCAATCAGTCACG

protein sequence of rna4582

>rna4582-protein ID=rna4582-protein|Name=rna4582|organism=Nannochloropsis gaditana|type=polypeptide|length=335bp
MPHSKFNWRSTSSPPSQNPDGLFAFAFGDTWKLTDYTLVKPENAKGCTLD
VSLEHDSKVTQLQVVCNASALQVSVMQAMNAQDFKWITQMRGTPLPNQPD
LYYFRTPEELLTQKLWRLRVKFLFSSTDISAVRIQTLSLSFEKLTRRGST
IKGMVTSSSIRSSAGVARTGMTAVAASAGGIATSRSSHTTHSILYRGSSM
STTTSTTASLTNTPTGSHTPTSDSVCGDGDLVSDLSEEASTGSLGSGPKS
NTSSASGSESREGRRTSKISDRGAIRALMSAIDKVISQGGNDGALVDELL
LLKERLDNHLVQRSSEQHLNATIARISSIIQSIVM

mRNA from alignment at CM002463.1:966055..968054+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4582 ID=rna4582|Name=rna4582|organism=Nannochloropsis gaditana|type=mRNA|length=2000bp|location=Sequence derived from alignment at CM002463.1:966055..968054+ (Nannochloropsis gaditana)
AAGGGTTTCCCCGCATTGACAGCGAGATGCCTTTGTAAGGAATTTTAAAA
GCCCTTGCTTCCAAAGGAGGATCGATTGATCTTCATCCAGCATAGACGAC
TCTGGGGTCTTCGCAGGGAGAGAGTAGCGGATCAGCCCTTGTTCTGGCTA
ACTACTATGGTGCCCAGCATATCCGCATTCTCCTCTTGCTACAGAGTGAT
TAATGTTTTTAATCATTTCTTTATCGTGCTTGTTTTATGATTGGGAAGGG
TACTTTGGTGATATTTACTCCTATCTTTTtacccctttttcctctgcGAA
CAGGGGACTCTGCCGGTCCCGAAAATCGTCTACAATGGACGCTTCGGTCA
CAGGGTAGAATAAAAACCTTTAGATCCCGATATAAGAATCGTGATAGTAA
TTTCCGCAGTAAAAAGATCGTAATCCAGAGAGTCAGGCCCCTTGTGGCGA
CTGGGCACGGCTTTGTGCCTCAAAAACTCTGGTAAGCGGCTTCCCAACAT
CTTGTGACACGGGTCAATGCCTCATTCCAAGTTTAATTGGCGGTCAAcat
catcgcctccttcgcAAAATCCTGATGGACTTTTTGCCTTCGCGTTTGGA
GACACTTGGAAGCTTACGGATTATACCCTCGTAAAACCGGAAAATGCTAA
AGGCTGCACCCTCGATGTCTCTCTCGAGCATGACTCCAAAGTCACACAGC
TGCAGGTCGTGTGTAATGCCTCAGCACTGCAAGTTAGCGTGATGCAGGCT
ATGAATGCTCAAGATTTTAAGTGGATTACCCAGATGCGCGGTACTCCTTT
GCCAAATCAACCAGACTTGTATTATTTTAGAACCCCCGAGGAGCTTCTCA
CTCAAAAATTGTGGCGGCTGCGCGTCAAGTTTCTCTTCTCATCAACAGAC
ATATCGGCCGTTCGTATTCAAACCTTATCTCTCTCATTTGAAAAATTGAC
GCGTCGAGGTAGTACCATCAAGGGCATGGTCACCAGTAGTAGCATCAGGA
GTTCAGCCGGTGTTGCTCGCACTGGCATGACGGCGGTCGCAGCATCTGCT
GGTGGGATTGCCACTAGCAGAAGTAGTCACACCACACATTCAATTTTGTA
CAGGGGAAGCTCAATGAGTACAACTACGAGCACCACGGCTTCACTGACGA
ACACACCCACGGGCTCTCACACTCCTACCTCCGACTCTGTGTGTGGTGAC
GGCGACCTGGTCTCTGACCTCTCGGAAGAAGCCAGCACAGGCTCATTAGG
TAGTGGTCCGAAAAGTAACACGAGTAGTGCAAGCGGCAGTGAGAGTAGGG
AAGGGCGAAGGACATCTAAGATTTCAGATAGAGGGGCCATACGGGCACTA
ATGAGTGCCATCGACAAGGTAATATCACAAGGCGGGAATGATGGTGCATT
GGTTGATGAGCTTTTGCTCTTGAAGGAGCGTTTAGACAATCATCTAGTGC
AGCGCTCTTCTGAGCAGCACTTGAATGCAACTATCGCACGAATTAGTTCA
ATAATTCAATCCATTGTCATGTGAAGGGGGGGTAATGCAGTGTCTATTGA
GGACTCAAGAAGTTTCTGGAAGTTCGAATGCACAACACATTTCGGCACGA
CTATACTTCAAATCTGCACTAGAGTGATTGAGAAATTTGGAAGAAGTCAG
AATAGAATACATGCCTACTGAGGGATTCTTGAGACAAACGGGAAAAAGTA
TCGTTTCCAAATCACCGGGAATCACATCTGAGAGAGTTAGTCAGTTTTGC
AATTAGGCTATGCATAGTTCCAGAGTGAGAGGAATTGTGAAGAAGGCAGA
AATGAGGGAAACATCCTTTCTGTCTCCATTTCGCATGGGAAGGGTATCCT
ATATGTATGAAAACCATGGAAATAATCACATACAATGGTCTTGACCATGA
AAAAGAAACAATCGTGCAGAAAAAGAGACAATTTGGTGTACGGTCACAAA
ATCCATCAGACGGAAGCGCAAGAGCTCCTTAAGCAATGCAAGGCTACTTG

Coding sequence (CDS) from alignment at CM002463.1:966055..968054+

>rna4582 ID=rna4582|Name=rna4582|organism=Nannochloropsis gaditana|type=CDS|length=1008bp|location=Sequence derived from alignment at CM002463.1:966055..968054+ (Nannochloropsis gaditana)
ATGCCTCATTCCAAGTTTAATTGGCGGTCAAcatcatcgcctccttcgcA
AAATCCTGATGGACTTTTTGCCTTCGCGTTTGGAGACACTTGGAAGCTTA
CGGATTATACCCTCGTAAAACCGGAAAATGCTAAAGGCTGCACCCTCGAT
GTCTCTCTCGAGCATGACTCCAAAGTCACACAGCTGCAGGTCGTGTGTAA
TGCCTCAGCACTGCAAGTTAGCGTGATGCAGGCTATGAATGCTCAAGATT
TTAAGTGGATTACCCAGATGCGCGGTACTCCTTTGCCAAATCAACCAGAC
TTGTATTATTTTAGAACCCCCGAGGAGCTTCTCACTCAAAAATTGTGGCG
GCTGCGCGTCAAGTTTCTCTTCTCATCAACAGACATATCGGCCGTTCGTA
TTCAAACCTTATCTCTCTCATTTGAAAAATTGACGCGTCGAGGTAGTACC
ATCAAGGGCATGGTCACCAGTAGTAGCATCAGGAGTTCAGCCGGTGTTGC
TCGCACTGGCATGACGGCGGTCGCAGCATCTGCTGGTGGGATTGCCACTA
GCAGAAGTAGTCACACCACACATTCAATTTTGTACAGGGGAAGCTCAATG
AGTACAACTACGAGCACCACGGCTTCACTGACGAACACACCCACGGGCTC
TCACACTCCTACCTCCGACTCTGTGTGTGGTGACGGCGACCTGGTCTCTG
ACCTCTCGGAAGAAGCCAGCACAGGCTCATTAGGTAGTGGTCCGAAAAGT
AACACGAGTAGTGCAAGCGGCAGTGAGAGTAGGGAAGGGCGAAGGACATC
TAAGATTTCAGATAGAGGGGCCATACGGGCACTAATGAGTGCCATCGACA
AGGTAATATCACAAGGCGGGAATGATGGTGCATTGGTTGATGAGCTTTTG
CTCTTGAAGGAGCGTTTAGACAATCATCTAGTGCAGCGCTCTTCTGAGCA
GCACTTGAATGCAACTATCGCACGAATTAGTTCAATAATTCAATCCATTG
TCATGTGA

Synonyms

Publications