rna4573, rna4573 (mRNA) Nannochloropsis gaditana

Overview
Namerna4573
Unique Namerna4573
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length477
Alignment locationCM002463.1:943471..944479 +

Link to JBrowse

Properties
Property NameValue
Productribosomal protein l12
Orig transcript idgnl|cribi|Naga_100014g51.9311.mrna
Orig protein idgnl|cribi|Naga_100014g51.9311
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:943471..944479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100014g51gene4412Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4573rna4573-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26134.1cds4561Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4573 ID=rna4573|Name=rna4573|organism=Nannochloropsis gaditana|type=mRNA|length=477bp
ATGAATTTACCACGAACTTTTTTGCAAACATCCCAGCCCCTCGTTGCAAA
GAGCCTGTCTGAAGCCACGCGGGCGGGGAAACGCTTGCGGGAGTTGATAC
TTTCCTCAAGTGAAGATTTGAGATGTGTCAATCTGATGTGTGAGAAAGTC
GGGGAGCCATGCATCTGCCGACTTGCCAGGACCCTTTCACAAACACCTGC
CCTTGAGCGCCTTGTCCTTAGCAATAACAATCTTACGGTCTTACCGGAGG
AAGTGTTCAAACTGCAAAGCCTTCGGTACCTAGATTTGTCAAACAACCTT
TTGCGGGAGCTCCCGCCTTCCGTCCTACAGCTGTCTAGCCTCGAGGTGCT
GTCTGTGGACGAGAATCTATTGGCGGATAGTTCTACTGGCAACATTGTAG
TAGACGATTCGAAAAAGCAAGTACGTCAATTTATAAGAGAGAGAACGGCG
GTACCGAGCTGTAAAACAACAAAGTAA
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protein sequence of rna4573

>rna4573-protein ID=rna4573-protein|Name=rna4573|organism=Nannochloropsis gaditana|type=polypeptide|length=166bp
MGPPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKA
TMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIK
HSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPT
EIQSKIDSGDITIPDE
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mRNA from alignment at CM002463.1:943471..944479+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4573 ID=rna4573|Name=rna4573|organism=Nannochloropsis gaditana|type=mRNA|length=1009bp|location=Sequence derived from alignment at CM002463.1:943471..944479+ (Nannochloropsis gaditana)
GATGGTCGTAGGGCTGCTTTTTCCGCGGTCGCATTAATTGGGTGGGAGCG
TGTTCGACCTTCTTGGTGCAATGtcgtccccctgctcctttccttACCCG
TTCCTCCTTGCCGGTGATGTATACCCGAAGTCAATTTCATTCACACTGTA
GACGCAACATTTCGACATCTTTTTAACACAGACACACTTCTTGCTAGCAC
AAtgggccctcctcctgcggctCCCGGTGAGATCAAGACTGGTAAGTTCG
CTTTCGTGACAGGTTATGGATagaggaggtggatgagTGGTGCGGTTCAC
AGCCTTGCATCACCAGACAAGCAAACGTGACATTAATCCTCGTTCATTTC
ATCTGTTCATTCTTTACATAGTCGTACTTCGTGCCGTCGGAGGCGAAGTG
GGTTCAGCGTCTACACTGGCGCCCAAAGTAGGCCCCCTCGGTCTGTCCCC
CAAgaaggtgggcgaggacatCCAAAAGGCGACCATGGACTGGAAAGGGC
TCAAGGTGACAGTGAAGCTGACCATCCAAAATCGTCAGGCTACGGTTTCA
CTGctgccctccgcctcctcgatgaTCATTCGGGCCTTAAAGGAGCCCCC
GCGCGAccggaagaaggagaagaacaTTAAGCACAGCGGGAACCTCACCA
TGGACGACATCATCAGCATCGCTCGCACCATGAGGCCTCGTTCTATGGCC
CGCACATTGTCTGGCACAGTCAAAGAAATCTTGGGAACGGCAAACTCAGT
AGGATGCACggtgcagggggaggcgcctACGGAAATTCAATCCAAGATCG
ATTCGGGCGACATCACTATTCCAGATGAGTAGAAGGAGGCCTGGGGCTCG
GGAGCTTGCCAAAGGGATGAGGCCAATTGTGTTTGTCAATTAGGATGCCG
GAGGTCGGTTTCTTGCCTGGCGACAGGCCGGAGTGCGCGTAGCTCTCGTC
CACAGAGGGGTGTGTAaggtgaaaagaaaaaatgaaaagtCTTGGAAGCA
CATGTTGCC
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Coding sequence (CDS) from alignment at CM002463.1:943471..944479+

>rna4573 ID=rna4573|Name=rna4573|organism=Nannochloropsis gaditana|type=CDS|length=1002bp|location=Sequence derived from alignment at CM002463.1:943471..944479+ (Nannochloropsis gaditana)
AtgggccctcctcctgcggctCCCGGTGAGATCAAGACTGTCGTACTTCG
TGCCGTCGGAGGCGAAGTGGGTTCAGCGTCTACACTGGCGCCCAAAGTAG
GCCCCCTCGGTCTGTCCCCCAAgaaggtgggcgaggacatCCAAAAGGCG
ACCATGGACTGGAAAGGGCTCAAGGTGACAGTGAAGCTGACCATCCAAAA
TCGTCAGGCTACGGTTTCACTGctgccctccgcctcctcgatgaTCATTC
GGGCCTTAAAGGAGCCCCCGCGCGAccggaagaaggagaagaacaTTAAG
CACAGCGGGAACCTCACCATGGACGACATCATCAGCATCGCTCGCACCAT
GAGGCCTCGTTCTATGGCCCGCACATTGTCTGGCACAGTCAAAGAAATCT
TGGGAACGGCAAACTCAGTAGGATGCACggtgcagggggaggcgcctACG
GAAATTCAATCCAAGATCGATTCGGGCGACATCACTATTCCAGATGAGTA
GAtgggccctcctcctgcggctCCCGGTGAGATCAAGACTGTCGTACTTC
GTGCCGTCGGAGGCGAAGTGGGTTCAGCGTCTACACTGGCGCCCAAAGTA
GGCCCCCTCGGTCTGTCCCCCAAgaaggtgggcgaggacatCCAAAAGGC
GACCATGGACTGGAAAGGGCTCAAGGTGACAGTGAAGCTGACCATCCAAA
ATCGTCAGGCTACGGTTTCACTGctgccctccgcctcctcgatgaTCATT
CGGGCCTTAAAGGAGCCCCCGCGCGAccggaagaaggagaagaacaTTAA
GCACAGCGGGAACCTCACCATGGACGACATCATCAGCATCGCTCGCACCA
TGAGGCCTCGTTCTATGGCCCGCACATTGTCTGGCACAGTCAAAGAAATC
TTGGGAACGGCAAACTCAGTAGGATGCACggtgcagggggaggcgcctAC
GGAAATTCAATCCAAGATCGATTCGGGCGACATCACTATTCCAGATGAGT
AG
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Synonyms
Publications