EWM26134.1, cds4561 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26134.1 vs. NCBI_GenBank
Match: gi|585108128|gb|EWM26134.1| (ribosomal protein l12 [Nannochloropsis gaditana]) HSP 1 Score: 329.717 bits (844), Expect = 3.691e-114 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query: 1 MGPPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
MGPPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE
Sbjct: 1 MGPPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
BLAST of EWM26134.1 vs. NCBI_GenBank
Match: gi|62083511|gb|AAX62480.1| (ribosomal protein L12 [Lysiphlebus testaceipes] >gi|62083513|gb|AAX62481.1| ribosomal protein L12 variant 1 [Lysiphlebus testaceipes]) HSP 1 Score: 251.136 bits (640), Expect = 4.499e-83 Identity = 118/164 (71.95%), Postives = 143/164 (87.20%), Query Frame = 0
Query: 3 PPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
PP P E+K V +R VGGEVG+ S+LAPK+GPLGLSPKKVG+DI KAT DWKGLK+TV+LTIQNRQAT+S++PSA+S++I+ALKEPPRDRKK+KNIKHSGN+T DD++SIARTMR RSM+R LSGTVKEILGT+ SVGCTV G AP +I IDSG+I +P+E
Sbjct: 2 PPKFDPTEVKKVFMRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTIQNRQATISVVPSAASLVIKALKEPPRDRKKQKNIKHSGNITFDDVLSIARTMRERSMSRKLSGTVKEILGTSQSVGCTVDGRAPHDIIEDIDSGEIEVPEE 165
BLAST of EWM26134.1 vs. NCBI_GenBank
Match: gi|957845107|ref|XP_014672972.1| (PREDICTED: 60S ribosomal protein L12-like [Priapulus caudatus]) HSP 1 Score: 250.366 bits (638), Expect = 8.780e-83 Identity = 121/164 (73.78%), Postives = 141/164 (85.98%), Query Frame = 0
Query: 3 PPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
PP P EIK V LRAVGGEVG+ STLAPK+GPLGLSPKKVG+DI KAT DWKGLK+T KLTIQNRQAT+S++PSA++M+I+ALKEPPRDRKK KNI H+GN+TMDDII+ A+ MR RS++R LSGTVKEILGTA SVGCTV G AP ++ KI+SGDI IPDE
Sbjct: 2 PPKFDPNEIKIVYLRAVGGEVGATSTLAPKIGPLGLSPKKVGDDIAKATQDWKGLKITCKLTIQNRQATISVVPSAAAMVIKALKEPPRDRKKVKNILHNGNITMDDIINTAKVMRDRSLSRFLSGTVKEILGTAQSVGCTVDGMAPHDVIEKINSGDIEIPDE 165
BLAST of EWM26134.1 vs. NCBI_GenBank
Match: gi|219123555|ref|XP_002182088.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406689|gb|EEC46628.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 249.98 bits (637), Expect = 1.057e-82 Identity = 119/166 (71.69%), Postives = 144/166 (86.75%), Query Frame = 0
Query: 1 MGPPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
MGPPP+ ++K V++R VGGE+GSAS+LAPK+GPLGLSPKKVGEDIQKATMDWKGL VTVKLT+ NRQATVS++PS+SS++++AL EP RDRKK KN+KH GNLT+D II IAR MR RSMAR L GTVKEILGTANS+GC+V GE+P +IQ+ ID G+I IP+E
Sbjct: 1 MGPPPS--DDVKIVIMRTVGGEIGSASSLAPKIGPLGLSPKKVGEDIQKATMDWKGLNVTVKLTVVNRQATVSMIPSSSSLVMKALNEPVRDRKKVKNVKHDGNLTLDQIIDIARQMRERSMARKLKGTVKEILGTANSIGCSVNGESPRDIQASIDDGEIEIPEE 164
BLAST of EWM26134.1 vs. NCBI_GenBank
Match: gi|1153830650|ref|XP_020291807.1| (60S ribosomal protein L12 [Pseudomyrmex gracilis]) HSP 1 Score: 249.98 bits (637), Expect = 1.069e-82 Identity = 118/164 (71.95%), Postives = 142/164 (86.59%), Query Frame = 0
Query: 3 PPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
PP P EIK V LR VGGEVG+ S+LAPK+GPLGLSPKKVG+DI KAT DWKGLK+TV+LTIQNRQAT+S++PSA+S+II+ALKEPPRDRK++KNIKHSGNLT DDI+SIAR MRPRSM+RTLSGTVKEILGT SVGCTV+G P ++ I+ G++ +P+E
Sbjct: 2 PPKFDPNEIKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTIQNRQATISVVPSAASLIIKALKEPPRDRKRQKNIKHSGNLTFDDIVSIARAMRPRSMSRTLSGTVKEILGTCQSVGCTVEGRPPHDLIDDINGGELEVPEE 165
BLAST of EWM26134.1 vs. NCBI_GenBank
Match: gi|158187756|gb|ABW23167.1| (ribosomal protein rpl12 [Arenicola marina]) HSP 1 Score: 248.825 bits (634), Expect = 3.532e-82 Identity = 119/164 (72.56%), Postives = 139/164 (84.76%), Query Frame = 0
Query: 3 PPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
PP P E+K V LRAVGGEVG+ STLAPK+GPLGLSPKKVG+DI KAT +WKGLK+TV+LTIQNRQA VS++PSASS++IRALKEPPRDRKK+KNIKHSGN+ D+I++IARTMRPRSM+R LSG KEILGT SVGCTV G P +I KIDSGD +P+E
Sbjct: 2 PPKFDPNEVKIVCLRAVGGEVGATSTLAPKIGPLGLSPKKVGDDIAKATQEWKGLKITVQLTIQNRQAKVSVVPSASSLVIRALKEPPRDRKKQKNIKHSGNIPFDEILAIARTMRPRSMSRKLSGVCKEILGTCQSVGCTVDGCHPHDIIEKIDSGDYEVPEE 165
BLAST of EWM26134.1 vs. NCBI_GenBank
Match: gi|1210512191|dbj|GAX28764.1| (large subunit ribosomal protein L12e [Fistulifera solaris] >gi|1210523144|dbj|GAX18195.1| large subunit ribosomal protein L12e [Fistulifera solaris]) HSP 1 Score: 248.825 bits (634), Expect = 3.568e-82 Identity = 118/166 (71.08%), Postives = 145/166 (87.35%), Query Frame = 0
Query: 1 MGPPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
MGPPP+ ++K V++R VGGEVGSAS+LAPK+GPLGLSPKKVGEDIQKATMDWKGL VTVKLT+ NRQATVS++PS+SS++++AL EP RDRKK KN+KH+GNLT+D +I IAR MR RSMAR LSGTVKEILGT NS+GCTV GE+P +IQ+ ID G++ IP++
Sbjct: 1 MGPPPS--DDVKIVIMRTVGGEVGSASSLAPKIGPLGLSPKKVGEDIQKATMDWKGLNVTVKLTVVNRQATVSMIPSSSSLVMKALNEPVRDRKKVKNVKHNGNLTLDQVIDIARQMRERSMARKLSGTVKEILGTCNSIGCTVNGESPRDIQAGIDDGEVEIPEK 164
BLAST of EWM26134.1 vs. NCBI_GenBank
Match: gi|1176077706|ref|XP_020608893.1| (60S ribosomal protein L12-like [Orbicella faveolata]) HSP 1 Score: 248.825 bits (634), Expect = 3.610e-82 Identity = 124/164 (75.61%), Postives = 137/164 (83.54%), Query Frame = 0
Query: 3 PPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
PP P EIK V LRA GGEVG+ S LAPK+GPLGLSPKKVG+DI KAT DWKGL++TV+LTIQNRQA VS++PSASS+IIRALKEPPRDRKK KNIKHSGNLTMD II IARTMRPRSMAR L GTVKEILGTA SVGCTV G+ P +I KI+ +I I DE
Sbjct: 2 PPKFDPNEIKIVYLRATGGEVGATSALAPKIGPLGLSPKKVGDDIAKATQDWKGLRITVQLTIQNRQAKVSVVPSASSLIIRALKEPPRDRKKVKNIKHSGNLTMDQIIEIARTMRPRSMARKLVGTVKEILGTAQSVGCTVDGQPPHDIIDKINDNEIEIEDE 165
BLAST of EWM26134.1 vs. NCBI_GenBank
Match: gi|906467663|gb|KNC28851.1| (hypothetical protein FF38_08441 [Lucilia cuprina]) HSP 1 Score: 248.825 bits (634), Expect = 3.898e-82 Identity = 119/164 (72.56%), Postives = 139/164 (84.76%), Query Frame = 0
Query: 3 PPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
PP P E+K V LR VGGEVG+ S+LAPK+GPLGLSPKKVG+DI KAT DWKGLK+TV LTIQNRQAT+S++PSA+S+II+ALKEPPRDRKK+KNIKHSGN+T DD++SIARTMRPRSMARTLSGT KEILGTA SVGCTV G P +I +I+ G +P E
Sbjct: 2 PPKFDPTEVKLVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVCLTIQNRQATISVVPSAASLIIKALKEPPRDRKKQKNIKHSGNITFDDVLSIARTMRPRSMARTLSGTCKEILGTAQSVGCTVDGRPPHDIIDEINDGSFEVPSE 165
BLAST of EWM26134.1 vs. NCBI_GenBank
Match: gi|759052908|ref|XP_011335603.1| (PREDICTED: 60S ribosomal protein L12 [Ooceraea biroi] >gi|607362093|gb|EZA56353.1| 60S ribosomal protein L12 [Ooceraea biroi]) HSP 1 Score: 248.44 bits (633), Expect = 4.645e-82 Identity = 115/164 (70.12%), Postives = 144/164 (87.80%), Query Frame = 0
Query: 3 PPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
PP P EIK V LR VGGEVG+ S+LAPK+GPLGLSPKKVG+DI KAT DWKGLK+TV+LTIQNRQAT+S++PSA+S+II+ALKEPPRDRK++KNIKHSGNL+ DDI+SIAR+MRPRSM+RTL+GTVKEILGT SVGCT++G P ++ I++G++ +P+E
Sbjct: 2 PPKFDPNEIKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTIQNRQATISVVPSAASLIIKALKEPPRDRKRQKNIKHSGNLSFDDIVSIARSMRPRSMSRTLAGTVKEILGTCQSVGCTIEGRPPHDLIDDINAGELEVPEE 165 The following BLAST results are available for this feature:
BLAST of EWM26134.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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