EWM26134.1, cds4561 (CDS) Nannochloropsis gaditana

Overview
NameEWM26134.1
Unique Namecds4561
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:943672..943711 +
Alignment locationCM002463.1:943842..944302 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26134.1
Productribosomal protein l12
Orig transcript idgnl|cribi|Naga_100014g51.9311.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:943672..943711 +
CM002463.1supercontigCM002463.1:943842..944302 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR020785Ribosomal_L11_CS
IPR020784Ribosomal_L11_N
IPR020783Ribosomal_L11_C
IPR000911Ribosomal_L11/L12
Homology
BLAST of EWM26134.1 vs. NCBI_GenBank
Match: gi|585108128|gb|EWM26134.1| (ribosomal protein l12 [Nannochloropsis gaditana])

HSP 1 Score: 329.717 bits (844), Expect = 3.691e-114
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query:    1 MGPPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
            MGPPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE
Sbjct:    1 MGPPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166          
BLAST of EWM26134.1 vs. NCBI_GenBank
Match: gi|62083511|gb|AAX62480.1| (ribosomal protein L12 [Lysiphlebus testaceipes] >gi|62083513|gb|AAX62481.1| ribosomal protein L12 variant 1 [Lysiphlebus testaceipes])

HSP 1 Score: 251.136 bits (640), Expect = 4.499e-83
Identity = 118/164 (71.95%), Postives = 143/164 (87.20%), Query Frame = 0
Query:    3 PPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
            PP   P E+K V +R VGGEVG+ S+LAPK+GPLGLSPKKVG+DI KAT DWKGLK+TV+LTIQNRQAT+S++PSA+S++I+ALKEPPRDRKK+KNIKHSGN+T DD++SIARTMR RSM+R LSGTVKEILGT+ SVGCTV G AP +I   IDSG+I +P+E
Sbjct:    2 PPKFDPTEVKKVFMRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTIQNRQATISVVPSAASLVIKALKEPPRDRKKQKNIKHSGNITFDDVLSIARTMRERSMSRKLSGTVKEILGTSQSVGCTVDGRAPHDIIEDIDSGEIEVPEE 165          
BLAST of EWM26134.1 vs. NCBI_GenBank
Match: gi|957845107|ref|XP_014672972.1| (PREDICTED: 60S ribosomal protein L12-like [Priapulus caudatus])

HSP 1 Score: 250.366 bits (638), Expect = 8.780e-83
Identity = 121/164 (73.78%), Postives = 141/164 (85.98%), Query Frame = 0
Query:    3 PPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
            PP   P EIK V LRAVGGEVG+ STLAPK+GPLGLSPKKVG+DI KAT DWKGLK+T KLTIQNRQAT+S++PSA++M+I+ALKEPPRDRKK KNI H+GN+TMDDII+ A+ MR RS++R LSGTVKEILGTA SVGCTV G AP ++  KI+SGDI IPDE
Sbjct:    2 PPKFDPNEIKIVYLRAVGGEVGATSTLAPKIGPLGLSPKKVGDDIAKATQDWKGLKITCKLTIQNRQATISVVPSAAAMVIKALKEPPRDRKKVKNILHNGNITMDDIINTAKVMRDRSLSRFLSGTVKEILGTAQSVGCTVDGMAPHDVIEKINSGDIEIPDE 165          
BLAST of EWM26134.1 vs. NCBI_GenBank
Match: gi|219123555|ref|XP_002182088.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406689|gb|EEC46628.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 249.98 bits (637), Expect = 1.057e-82
Identity = 119/166 (71.69%), Postives = 144/166 (86.75%), Query Frame = 0
Query:    1 MGPPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
            MGPPP+   ++K V++R VGGE+GSAS+LAPK+GPLGLSPKKVGEDIQKATMDWKGL VTVKLT+ NRQATVS++PS+SS++++AL EP RDRKK KN+KH GNLT+D II IAR MR RSMAR L GTVKEILGTANS+GC+V GE+P +IQ+ ID G+I IP+E
Sbjct:    1 MGPPPS--DDVKIVIMRTVGGEIGSASSLAPKIGPLGLSPKKVGEDIQKATMDWKGLNVTVKLTVVNRQATVSMIPSSSSLVMKALNEPVRDRKKVKNVKHDGNLTLDQIIDIARQMRERSMARKLKGTVKEILGTANSIGCSVNGESPRDIQASIDDGEIEIPEE 164          
BLAST of EWM26134.1 vs. NCBI_GenBank
Match: gi|1153830650|ref|XP_020291807.1| (60S ribosomal protein L12 [Pseudomyrmex gracilis])

HSP 1 Score: 249.98 bits (637), Expect = 1.069e-82
Identity = 118/164 (71.95%), Postives = 142/164 (86.59%), Query Frame = 0
Query:    3 PPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
            PP   P EIK V LR VGGEVG+ S+LAPK+GPLGLSPKKVG+DI KAT DWKGLK+TV+LTIQNRQAT+S++PSA+S+II+ALKEPPRDRK++KNIKHSGNLT DDI+SIAR MRPRSM+RTLSGTVKEILGT  SVGCTV+G  P ++   I+ G++ +P+E
Sbjct:    2 PPKFDPNEIKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTIQNRQATISVVPSAASLIIKALKEPPRDRKRQKNIKHSGNLTFDDIVSIARAMRPRSMSRTLSGTVKEILGTCQSVGCTVEGRPPHDLIDDINGGELEVPEE 165          
BLAST of EWM26134.1 vs. NCBI_GenBank
Match: gi|158187756|gb|ABW23167.1| (ribosomal protein rpl12 [Arenicola marina])

HSP 1 Score: 248.825 bits (634), Expect = 3.532e-82
Identity = 119/164 (72.56%), Postives = 139/164 (84.76%), Query Frame = 0
Query:    3 PPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
            PP   P E+K V LRAVGGEVG+ STLAPK+GPLGLSPKKVG+DI KAT +WKGLK+TV+LTIQNRQA VS++PSASS++IRALKEPPRDRKK+KNIKHSGN+  D+I++IARTMRPRSM+R LSG  KEILGT  SVGCTV G  P +I  KIDSGD  +P+E
Sbjct:    2 PPKFDPNEVKIVCLRAVGGEVGATSTLAPKIGPLGLSPKKVGDDIAKATQEWKGLKITVQLTIQNRQAKVSVVPSASSLVIRALKEPPRDRKKQKNIKHSGNIPFDEILAIARTMRPRSMSRKLSGVCKEILGTCQSVGCTVDGCHPHDIIEKIDSGDYEVPEE 165          
BLAST of EWM26134.1 vs. NCBI_GenBank
Match: gi|1210512191|dbj|GAX28764.1| (large subunit ribosomal protein L12e [Fistulifera solaris] >gi|1210523144|dbj|GAX18195.1| large subunit ribosomal protein L12e [Fistulifera solaris])

HSP 1 Score: 248.825 bits (634), Expect = 3.568e-82
Identity = 118/166 (71.08%), Postives = 145/166 (87.35%), Query Frame = 0
Query:    1 MGPPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
            MGPPP+   ++K V++R VGGEVGSAS+LAPK+GPLGLSPKKVGEDIQKATMDWKGL VTVKLT+ NRQATVS++PS+SS++++AL EP RDRKK KN+KH+GNLT+D +I IAR MR RSMAR LSGTVKEILGT NS+GCTV GE+P +IQ+ ID G++ IP++
Sbjct:    1 MGPPPS--DDVKIVIMRTVGGEVGSASSLAPKIGPLGLSPKKVGEDIQKATMDWKGLNVTVKLTVVNRQATVSMIPSSSSLVMKALNEPVRDRKKVKNVKHNGNLTLDQVIDIARQMRERSMARKLSGTVKEILGTCNSIGCTVNGESPRDIQAGIDDGEVEIPEK 164          
BLAST of EWM26134.1 vs. NCBI_GenBank
Match: gi|1176077706|ref|XP_020608893.1| (60S ribosomal protein L12-like [Orbicella faveolata])

HSP 1 Score: 248.825 bits (634), Expect = 3.610e-82
Identity = 124/164 (75.61%), Postives = 137/164 (83.54%), Query Frame = 0
Query:    3 PPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
            PP   P EIK V LRA GGEVG+ S LAPK+GPLGLSPKKVG+DI KAT DWKGL++TV+LTIQNRQA VS++PSASS+IIRALKEPPRDRKK KNIKHSGNLTMD II IARTMRPRSMAR L GTVKEILGTA SVGCTV G+ P +I  KI+  +I I DE
Sbjct:    2 PPKFDPNEIKIVYLRATGGEVGATSALAPKIGPLGLSPKKVGDDIAKATQDWKGLRITVQLTIQNRQAKVSVVPSASSLIIRALKEPPRDRKKVKNIKHSGNLTMDQIIEIARTMRPRSMARKLVGTVKEILGTAQSVGCTVDGQPPHDIIDKINDNEIEIEDE 165          
BLAST of EWM26134.1 vs. NCBI_GenBank
Match: gi|906467663|gb|KNC28851.1| (hypothetical protein FF38_08441 [Lucilia cuprina])

HSP 1 Score: 248.825 bits (634), Expect = 3.898e-82
Identity = 119/164 (72.56%), Postives = 139/164 (84.76%), Query Frame = 0
Query:    3 PPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
            PP   P E+K V LR VGGEVG+ S+LAPK+GPLGLSPKKVG+DI KAT DWKGLK+TV LTIQNRQAT+S++PSA+S+II+ALKEPPRDRKK+KNIKHSGN+T DD++SIARTMRPRSMARTLSGT KEILGTA SVGCTV G  P +I  +I+ G   +P E
Sbjct:    2 PPKFDPTEVKLVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVCLTIQNRQATISVVPSAASLIIKALKEPPRDRKKQKNIKHSGNITFDDVLSIARTMRPRSMARTLSGTCKEILGTAQSVGCTVDGRPPHDIIDEINDGSFEVPSE 165          
BLAST of EWM26134.1 vs. NCBI_GenBank
Match: gi|759052908|ref|XP_011335603.1| (PREDICTED: 60S ribosomal protein L12 [Ooceraea biroi] >gi|607362093|gb|EZA56353.1| 60S ribosomal protein L12 [Ooceraea biroi])

HSP 1 Score: 248.44 bits (633), Expect = 4.645e-82
Identity = 115/164 (70.12%), Postives = 144/164 (87.80%), Query Frame = 0
Query:    3 PPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
            PP   P EIK V LR VGGEVG+ S+LAPK+GPLGLSPKKVG+DI KAT DWKGLK+TV+LTIQNRQAT+S++PSA+S+II+ALKEPPRDRK++KNIKHSGNL+ DDI+SIAR+MRPRSM+RTL+GTVKEILGT  SVGCT++G  P ++   I++G++ +P+E
Sbjct:    2 PPKFDPNEIKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTIQNRQATISVVPSAASLIIKALKEPPRDRKRQKNIKHSGNLSFDDIVSIARSMRPRSMSRTLAGTVKEILGTCQSVGCTIEGRPPHDLIDDINAGELEVPEE 165          
The following BLAST results are available for this feature:
BLAST of EWM26134.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108128|gb|EWM26134.1|3.691e-114100.00ribosomal protein l12 [Nannochloropsis gaditana][more]
gi|62083511|gb|AAX62480.1|4.499e-8371.95ribosomal protein L12 [Lysiphlebus testaceipes] >g... [more]
gi|957845107|ref|XP_014672972.1|8.780e-8373.78PREDICTED: 60S ribosomal protein L12-like [Priapul... [more]
gi|219123555|ref|XP_002182088.1|1.057e-8271.69predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1153830650|ref|XP_020291807.1|1.069e-8271.9560S ribosomal protein L12 [Pseudomyrmex gracilis][more]
gi|158187756|gb|ABW23167.1|3.532e-8272.56ribosomal protein rpl12 [Arenicola marina][more]
gi|1210512191|dbj|GAX28764.1|3.568e-8271.08large subunit ribosomal protein L12e [Fistulifera ... [more]
gi|1176077706|ref|XP_020608893.1|3.610e-8275.6160S ribosomal protein L12-like [Orbicella faveolat... [more]
gi|906467663|gb|KNC28851.1|3.898e-8272.56hypothetical protein FF38_08441 [Lucilia cuprina][more]
gi|759052908|ref|XP_011335603.1|4.645e-8270.12PREDICTED: 60S ribosomal protein L12 [Ooceraea bir... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4573rna4573Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications