rna4571, rna4571 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4571
Unique Name	rna4571
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1335
Alignment location	CM002463.1:941427..942532 +

Link to JBrowse

Properties


Property Name	Value
Product	uncharacterized protein
Orig transcript id	gnl\|cribi\|Naga_100014g49.9293.mrna
Orig protein id	gnl\|cribi\|Naga_100014g49.9293
Gene	atp10
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:941427..942532 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
atp10	gene4410	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4571	rna4571-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26116.1	cds4559	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:941427..942532+
coding sequence from alignment at CM002463.1:941427..942532+

mRNA sequence

>rna4571 ID=rna4571|Name=rna4571|organism=Nannochloropsis gaditana|type=mRNA|length=1335bp
ATGAGGACGATTCCCAGGACAACGAGTGATGAAAAGGGCGTAAGCAAGAG
CAGCGATGCCGCAAGGCTTCAGCTCCAACTCAAATTAGGAATGCAGTTGA
TGAGTGGAAGGCCTGGACTTCTAGGGATCGTGTTCATGATCATGCTGGCG
AACAAAACTTTTGCTTTTCGAGTACCCGGGAAATTCTCGTTTAGAAAGCC
TGACATGCATAGATTGCGCGCTATTCAAAAGCCAGGCGAAGCCAAGCAAA
AGAGTCGGAAAGATGTCATCACGCAAGGGCTCGCAGCGCTTGCTTCAGGA
CTCACAATTGTATCTACTGGTTCAGTGCAAGCGCGGGTCCCTTCTTTGAA
CGCCAGCGGCGGGCTCACCGGTGGACAAGGGAAAAAAACAATCTTGATCA
CGGGCGCGAATTCGGGCATTGGATTGGATGCATCGAAAAAGCTTGCCGCT
GCAGGCCATGACGTCTTCGTGGCGTGTCGCACCTTGTCGAAGGCCAAAGA
GGCGGCAAGGGTATCGAATGCAGCGGGCGCTTTTGAGTGCGATCTCTCGA
GTCTATCTTCCGTCGAAAGGCTCGTGGAAGCGTGGGGAAATCGGCCAATC
GACGCTCTTTGCCTGAATGCCGGTGTGGCCATGAGCACCTCTGAAACCAT
GCCACACTTTACCGCTGAAGGTTTCGAAGAAACGATTGGAGTGAACCACT
TTGGACACTTTCTTCTTGCACAAAAATTGCTCCCTAACCTGGAAAAGTCG
TCCCTGGCTCACCCACGCCTGGTCGTGACTGCCAGTTCTGTGCATGATCC
ATCCACCCCTGGGGGAAATGTAGGTCCCGGAGCGACGCTGGGCAATCTCA
AGGGCTTTACGGATTTTCTAGAAAAAGGCAAACGATTTGAAATGGTGGAT
GGCGGATCCTATTCCGGCGACAAAGCATATAAGGACTCCAAGCTTCTCAA
CGTCCTTTTCACTCAAGAGATGAGTCGTCGACTGCTTGATCGGAAGAGTA
AAGTACGCTGTGATTGCTTCTCCCCGGGTCTGATCCCATCAACAGGATTA
TTCAGATCCCAAAATCAGCTTTTCGTGGGCTTGTTCAATTTTTTCGCTGT
GAACGTTCTAGGCGTAGGAACAACCATATCAGAAGGGGGTGACTGTCTGG
TTTACATGGTAGAGGCACCCGAGTTAGAAGACACGTCGGCAGTGTTTTTG
GCCACGCCGCCCGGGAAGCCGAAAGATCTTTTCTCAAGCCAGACGATTAG
TAAGGAAGCTCAAGACACTGCCAAGGCGCAGCGAGTTTGGGATTTGAGTG
AGAAGCTTCTCAACAAAGTCATGAAGGCGGCCTGA

protein sequence of rna4571

>rna4571-protein ID=rna4571-protein|Name=rna4571|organism=Nannochloropsis gaditana|type=polypeptide|length=289bp
MHTLKIMRGRVQPPLSLMQTFELSKIARSDITRGIGSTSTARLGKPSSQG
AYKGSIDPKPDLPPDISDKEAARLKKVEKIKEEIRRGYFYELGQINRTKS
KLFEADKELVPPQKALKFPSFQAESLLGVTHQFGALLRQTNNQVSLVGVS
FRDSGFRVLPDWIKPFLEEFAQTPAMTVLQVSFEDRSWLKLLKFLLVNGQ
KASIERERHGQSFLRFGSTQDIREGMGIDNRMVGYVFLVDKLGRMRWRGT
GRPSDEEIGSMLKCAHELFEEQASTGKTKRLQGKISTRA

mRNA from alignment at CM002463.1:941427..942532+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4571 ID=rna4571|Name=rna4571|organism=Nannochloropsis gaditana|type=mRNA|length=1106bp|location=Sequence derived from alignment at CM002463.1:941427..942532+ (Nannochloropsis gaditana)
ATGCACACACTCAAGATAATGCGCGGGAGGGTTCAACCTCCCCTGTCCTT
GATGCAGACCTTTGAGTTATCCAAGATTGCTAGAAGGTAAATCGGTAGTG
TAGAAGCTAATCCAACAATGCCAATATTTTAATATTGATGTAATAAGCCC
TTACGCGtaatttttttttaaaagcgACATTACGCGCGGAATTGGGAGCA
CTAGTACAGCCCGGCTCGGAAAACCCTCGAGTCAGGGAGCTTACAAGGGC
AGCATCGATCCAAAGCCCGACCTGCCGCCAGATATATCGGATAAAGAAGC
CGCACGCTTGAAAAAGGTAGAAAAAATCAAGGAAGAAATTCGACGGGGTT
ACTTTTACGAATTGGGCCAGATCAATCGGACGAAAAGTAAGCTATTtgag
gcggacaaggagtTGGTGCCGCCGCAGAAAGCCCTCAAGTTCCCATCCTT
CCAGGCTGAGTCACTGCTGGGGGTGACACACCAATTCGGGGCTCTTCTCA
GGCAGACGAATAACCAGGTTTCGCTTGTGGGAGTATCATTTCGGGACTCC
GGTTTCCGTGTACTTCCTGACTGGATAAAGCCTTTCCTCGAGGAGTTTGC
GCAGACCCCGGCAATGACGGTGTTACAGGTCTCATTCGAGGACAGAAGTT
GGCTGAAGGTGAGGAGCCCTCTGACCCTGTGTGCTATTGGCAACCTTTAC
CAGTCATGCTCATCATTTTCACAACGAAACACGTAGCTGCTTAAATTCCT
CCTCGTGAACGGGCAGAAGGCTAGCATTGAGCGCGAGCGCCACGGACAAT
CCTTTTTGCGGTTTGGATCCACTCAGGACATTCGCGAAGGCATGGGAATC
GACAACCGAATGGTTGGCTACGTTTTCTTGGTTGATAAGCTTGGGCGCAT
GCGCTGGAGGTAAGGATCTCGAAGCGAACAGCTTGGAACGAATCGTCCCT
TCTCAcggttcctcccctcgacATCACAGAGGAACGGGGCGGCCTAGCGA
CGAAGAGATAGGATCGATGCTCAAATGTGCTCACGAACTTTTTGAGGAAC
AGGCGTCCACTGGAAAGACGAAACGGCTCCAAGGCAAAATAAGTACGAGG
GCTTGA

Coding sequence (CDS) from alignment at CM002463.1:941427..942532+

>rna4571 ID=rna4571|Name=rna4571|organism=Nannochloropsis gaditana|type=CDS|length=3480bp|location=Sequence derived from alignment at CM002463.1:941427..942532+ (Nannochloropsis gaditana)
ATGCACACACTCAAGATAATGCGCGGGAGGGTTCAACCTCCCCTGTCCTT
GATGCAGACCTTTGAGTTATCCAAGATTGCTAGAAGcgACATTACGCGCG
GAATTGGGAGCACTAGTACAGCCCGGCTCGGAAAACCCTCGAGTCAGGGA
GCTTACAAGGGCAGCATCGATCCAAAGCCCGACCTGCCGCCAGATATATC
GGATAAAGAAGCCGCACGCTTGAAAAAGGTAGAAAAAATCAAGGAAGAAA
TTCGACGGGGTTACTTTTACGAATTGGGCCAGATCAATCGGACGAAAAGT
AAGCTATTtgaggcggacaaggagtTGGTGCCGCCGCAGAAAGCCCTCAA
GTTCCCATCCTTCCAGGCTGAGTCACTGCTGGGGGTGACACACCAATTCG
GGGCTCTTCTCAGGCAGACGAATAACCAGGTTTCGCTTGTGGGAGTATCA
TTTCGGGACTCCGGTTTCCGTGTACTTCCTGACTGGATAAAGCCTTTCCT
CGAGGAGTTTGCGCAGACCCCGGCAATGACGGTGTTACAGGTCTCATTCG
AGGACAGAAGTTGGCTGAAGCTGCTTAAATTCCTCCTCGTGAACGGGCAG
AAGGCTAGCATTGAGCGCGAGCGCCACGGACAATCCTTTTTGCGGTTTGG
ATCCACTCAGGACATTCGCGAAGGCATGGGAATCGACAACCGAATGGTTG
GCTACGTTTTCTTGGTTGATAAGCTTGGGCGCATGCGCTGGAGAGGAACG
GGGCGGCCTAGCGACGAAGAGATAGGATCGATGCTCAAATGTGCTCACGA
ACTTTTTGAGGAACAGGCGTCCACTGGAAAGACGAAACGGCTCCAAGGCA
AAATAAGTACGAGGGCTTGAATGCACACACTCAAGATAATGCGCGGGAGG
GTTCAACCTCCCCTGTCCTTGATGCAGACCTTTGAGTTATCCAAGATTGC
TAGAAGcgACATTACGCGCGGAATTGGGAGCACTAGTACAGCCCGGCTCG
GAAAACCCTCGAGTCAGGGAGCTTACAAGGGCAGCATCGATCCAAAGCCC
GACCTGCCGCCAGATATATCGGATAAAGAAGCCGCACGCTTGAAAAAGGT
AGAAAAAATCAAGGAAGAAATTCGACGGGGTTACTTTTACGAATTGGGCC
AGATCAATCGGACGAAAAGTAAGCTATTtgaggcggacaaggagtTGGTG
CCGCCGCAGAAAGCCCTCAAGTTCCCATCCTTCCAGGCTGAGTCACTGCT
GGGGGTGACACACCAATTCGGGGCTCTTCTCAGGCAGACGAATAACCAGG
TTTCGCTTGTGGGAGTATCATTTCGGGACTCCGGTTTCCGTGTACTTCCT
GACTGGATAAAGCCTTTCCTCGAGGAGTTTGCGCAGACCCCGGCAATGAC
GGTGTTACAGGTCTCATTCGAGGACAGAAGTTGGCTGAAGCTGCTTAAAT
TCCTCCTCGTGAACGGGCAGAAGGCTAGCATTGAGCGCGAGCGCCACGGA
CAATCCTTTTTGCGGTTTGGATCCACTCAGGACATTCGCGAAGGCATGGG
AATCGACAACCGAATGGTTGGCTACGTTTTCTTGGTTGATAAGCTTGGGC
GCATGCGCTGGAGAGGAACGGGGCGGCCTAGCGACGAAGAGATAGGATCG
ATGCTCAAATGTGCTCACGAACTTTTTGAGGAACAGGCGTCCACTGGAAA
GACGAAACGGCTCCAAGGCAAAATAAGTACGAGGGCTTGAATGCACACAC
TCAAGATAATGCGCGGGAGGGTTCAACCTCCCCTGTCCTTGATGCAGACC
TTTGAGTTATCCAAGATTGCTAGAAGcgACATTACGCGCGGAATTGGGAG
CACTAGTACAGCCCGGCTCGGAAAACCCTCGAGTCAGGGAGCTTACAAGG
GCAGCATCGATCCAAAGCCCGACCTGCCGCCAGATATATCGGATAAAGAA
GCCGCACGCTTGAAAAAGGTAGAAAAAATCAAGGAAGAAATTCGACGGGG
TTACTTTTACGAATTGGGCCAGATCAATCGGACGAAAAGTAAGCTATTtg
aggcggacaaggagtTGGTGCCGCCGCAGAAAGCCCTCAAGTTCCCATCC
TTCCAGGCTGAGTCACTGCTGGGGGTGACACACCAATTCGGGGCTCTTCT
CAGGCAGACGAATAACCAGGTTTCGCTTGTGGGAGTATCATTTCGGGACT
CCGGTTTCCGTGTACTTCCTGACTGGATAAAGCCTTTCCTCGAGGAGTTT
GCGCAGACCCCGGCAATGACGGTGTTACAGGTCTCATTCGAGGACAGAAG
TTGGCTGAAGCTGCTTAAATTCCTCCTCGTGAACGGGCAGAAGGCTAGCA
TTGAGCGCGAGCGCCACGGACAATCCTTTTTGCGGTTTGGATCCACTCAG
GACATTCGCGAAGGCATGGGAATCGACAACCGAATGGTTGGCTACGTTTT
CTTGGTTGATAAGCTTGGGCGCATGCGCTGGAGAGGAACGGGGCGGCCTA
GCGACGAAGAGATAGGATCGATGCTCAAATGTGCTCACGAACTTTTTGAG
GAACAGGCGTCCACTGGAAAGACGAAACGGCTCCAAGGCAAAATAAGTAC
GAGGGCTTGAATGCACACACTCAAGATAATGCGCGGGAGGGTTCAACCTC
CCCTGTCCTTGATGCAGACCTTTGAGTTATCCAAGATTGCTAGAAGcgAC
ATTACGCGCGGAATTGGGAGCACTAGTACAGCCCGGCTCGGAAAACCCTC
GAGTCAGGGAGCTTACAAGGGCAGCATCGATCCAAAGCCCGACCTGCCGC
CAGATATATCGGATAAAGAAGCCGCACGCTTGAAAAAGGTAGAAAAAATC
AAGGAAGAAATTCGACGGGGTTACTTTTACGAATTGGGCCAGATCAATCG
GACGAAAAGTAAGCTATTtgaggcggacaaggagtTGGTGCCGCCGCAGA
AAGCCCTCAAGTTCCCATCCTTCCAGGCTGAGTCACTGCTGGGGGTGACA
CACCAATTCGGGGCTCTTCTCAGGCAGACGAATAACCAGGTTTCGCTTGT
GGGAGTATCATTTCGGGACTCCGGTTTCCGTGTACTTCCTGACTGGATAA
AGCCTTTCCTCGAGGAGTTTGCGCAGACCCCGGCAATGACGGTGTTACAG
GTCTCATTCGAGGACAGAAGTTGGCTGAAGCTGCTTAAATTCCTCCTCGT
GAACGGGCAGAAGGCTAGCATTGAGCGCGAGCGCCACGGACAATCCTTTT
TGCGGTTTGGATCCACTCAGGACATTCGCGAAGGCATGGGAATCGACAAC
CGAATGGTTGGCTACGTTTTCTTGGTTGATAAGCTTGGGCGCATGCGCTG
GAGAGGAACGGGGCGGCCTAGCGACGAAGAGATAGGATCGATGCTCAAAT
GTGCTCACGAACTTTTTGAGGAACAGGCGTCCACTGGAAAGACGAAACGG
CTCCAAGGCAAAATAAGTACGAGGGCTTGA

Synonyms

Publications