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Properties
| Property Name | Value |
|---|
| Product | Zinc finger, HIT-type |
| Orig transcript id | gnl|cribi|Naga_100014g46.9279.mrna |
| Orig protein id | gnl|cribi|Naga_100014g46.9279 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:933543..934433 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4568 ID=rna4568|Name=rna4568|organism=Nannochloropsis gaditana|type=mRNA|length=744bp
ATGCGCACACACATTGCGGACGGAGAGCCTTTCCCTTACTCTTTCCCCTC
TCCATCACGCAAACGGCAAATTCCACACGAGGACCGGGACATTCTTGAGA
TCAAGCGACGTATGGGCGGTCTGCGCTTCGGGGAAGAATTACCCGACCTT
GGCAGCAGTTTACAACCTCCAATAGATGTAAACCTGACCCCTCTACATGG
AAGTCCCGACTCTGTCTTTGGCTCGAGTGGTGGGCCTGGCGTGCCCCCCC
CCGTCCCCGGCCCCAATTGTGCTGGAAAGTCGACGGCGCCCCATGGATTT
CCTCAGACCCCGTCCATCGATGAAGGCGCTACAGAGATGGACAGTGAAGA
GAGCGAGGGGGATGACGAAGTGGCGGGTGTGTTGAACGGGAGATCAGACA
CCAGGAGTAGGTTTTCTGGACATGAAAAGGACCTGGCAAAGGACGCGTTT
CGCAGGGGCACGCAGGACGTTTCTCGCATCGACGAGGATGATCCGCGTGC
CACCATGCTGAATATCTTGTACAAGCGACGTCCACCACGGGACAAGGTGG
AGGAAAAAATCGAGAACCTAATTCGTCGCTCGATGCTGCGCGCCACGCCT
GGTGGTCCCGCGGCCCCTCCGCTCTCTCAATGCGACGCCCCGTGGCCGGT
GACAGAGTCGCAGCGCATGGACGGAAGCGGGAGCAGCGCGTCATCGCATT
TCCTTCCAAAGAATGATGATGGTGGCGGCGATATGGACATGTGA back to topprotein sequence of rna4568 >rna4568-protein ID=rna4568-protein|Name=rna4568|organism=Nannochloropsis gaditana|type=polypeptide|length=189bp
MSTNKRSAWDEAMGLAGAGIKQTKKKGAKRSSGRQAVLSKAMQVVDEETR
REVRDARLEALEADNYVENAGEEMDEAYVDSEEEGRPKVKREAKRKRSMA
QRQQMANKLISSFRKKPLAQWVYEAGYERSNGPNYLTAAAQPSSLPTRCF
CSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKFATS back to topmRNA from alignment at CM002463.1:933543..934433+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4568 ID=rna4568|Name=rna4568|organism=Nannochloropsis gaditana|type=mRNA|length=891bp|location=Sequence derived from alignment at CM002463.1:933543..934433+ (Nannochloropsis gaditana)
ATGTCGACAAATAAAAGGTCGGCATGGGATGAAGCCATGGGACTGGCCGG
CGCCGGCATAAAGCAGaccaagaaaaagggagcTAAGCGTTCATCAGGTC
GACAAGCGGTACTGAGCAAGGCCATGCAGGTTGTGGACGAAGAAACACGG
AGAGAGGTTCGGGACGCACGGCTAGAGGCCCTTGAAGCCGATAACTATGT
GGAAAATGCTGGAGAAGAAATGGACGAGGCCTACGTAGACTCCGAGGTAG
GGTGAATCGGGGGGCTGGTTGGATAGATGAGGTAGAAGGGCCCTCAATAG
GAAAATCTCACTTCGACAAATAtcgcaggaggaagggcgcccTAAGGTCA
AAAGGGAAGCTAAACGGAAGCGCTCTATGGCGCAAAGGCAGCAAATGGCA
AACAAACTCATGTAAGGACCTTTATGTTGGAAAGAGTGGGATAACGGACT
CAAGAGCTCTTCATCGCACCATTCGAACACACAGCTCAAGTTTTAGGAAG
AAGCCTCTTGCTCAATGGGTCTATGAAGCGGTGCGTTGTGAAGATGCTTT
CATGAAATCTTCGTGCATCCCGTCGTCCACCTTCGTGAGCCCAATATGTA
TTTCTCGTTTTACAAAGTCTTAATCGGATGCATGAGTGCCTTTTGCTTAT
CTCGTCAAGATTCCGCGTGTCTAAAATATTTTTCCATCCTTCTTAGGGCT
ACGAGCGCTCGAACGGTCCGAACTACctgacggcggcggcgcagCCATCA
TCATTGCCGACGCGGTGCTTCTGCTCGGTTTGCGGGTACTGGGGCTTGTA
CACCTGCACTCGGTGCGGGATGAGATATTGCTCTAGCAAGTGCGCCGAAA
CACATAAGGAGACGAGATGTCTGAAATTTGCGACAAGCTGA back to topCoding sequence (CDS) from alignment at CM002463.1:933543..934433+ >rna4568 ID=rna4568|Name=rna4568|organism=Nannochloropsis gaditana|type=CDS|length=2280bp|location=Sequence derived from alignment at CM002463.1:933543..934433+ (Nannochloropsis gaditana)
ATGTCGACAAATAAAAGGTCGGCATGGGATGAAGCCATGGGACTGGCCGG
CGCCGGCATAAAGCAGaccaagaaaaagggagcTAAGCGTTCATCAGGTC
GACAAGCGGTACTGAGCAAGGCCATGCAGGTTGTGGACGAAGAAACACGG
AGAGAGGTTCGGGACGCACGGCTAGAGGCCCTTGAAGCCGATAACTATGT
GGAAAATGCTGGAGAAGAAATGGACGAGGCCTACGTAGACTCCGAGgagg
aagggcgcccTAAGGTCAAAAGGGAAGCTAAACGGAAGCGCTCTATGGCG
CAAAGGCAGCAAATGGCAAACAAACTCATCTCAAGTTTTAGGAAGAAGCC
TCTTGCTCAATGGGTCTATGAAGCGGGCTACGAGCGCTCGAACGGTCCGA
ACTACctgacggcggcggcgcagCCATCATCATTGCCGACGCGGTGCTTC
TGCTCGGTTTGCGGGTACTGGGGCTTGTACACCTGCACTCGGTGCGGGAT
GAGATATTGCTCTAGCAAGTGCGCCGAAACACATAAGGAGACGAGATGTC
TGAAATTTGCGACAAGCTGAATGTCGACAAATAAAAGGTCGGCATGGGAT
GAAGCCATGGGACTGGCCGGCGCCGGCATAAAGCAGaccaagaaaaaggg
agcTAAGCGTTCATCAGGTCGACAAGCGGTACTGAGCAAGGCCATGCAGG
TTGTGGACGAAGAAACACGGAGAGAGGTTCGGGACGCACGGCTAGAGGCC
CTTGAAGCCGATAACTATGTGGAAAATGCTGGAGAAGAAATGGACGAGGC
CTACGTAGACTCCGAGgaggaagggcgcccTAAGGTCAAAAGGGAAGCTA
AACGGAAGCGCTCTATGGCGCAAAGGCAGCAAATGGCAAACAAACTCATC
TCAAGTTTTAGGAAGAAGCCTCTTGCTCAATGGGTCTATGAAGCGGGCTA
CGAGCGCTCGAACGGTCCGAACTACctgacggcggcggcgcagCCATCAT
CATTGCCGACGCGGTGCTTCTGCTCGGTTTGCGGGTACTGGGGCTTGTAC
ACCTGCACTCGGTGCGGGATGAGATATTGCTCTAGCAAGTGCGCCGAAAC
ACATAAGGAGACGAGATGTCTGAAATTTGCGACAAGCTGAATGTCGACAA
ATAAAAGGTCGGCATGGGATGAAGCCATGGGACTGGCCGGCGCCGGCATA
AAGCAGaccaagaaaaagggagcTAAGCGTTCATCAGGTCGACAAGCGGT
ACTGAGCAAGGCCATGCAGGTTGTGGACGAAGAAACACGGAGAGAGGTTC
GGGACGCACGGCTAGAGGCCCTTGAAGCCGATAACTATGTGGAAAATGCT
GGAGAAGAAATGGACGAGGCCTACGTAGACTCCGAGgaggaagggcgccc
TAAGGTCAAAAGGGAAGCTAAACGGAAGCGCTCTATGGCGCAAAGGCAGC
AAATGGCAAACAAACTCATCTCAAGTTTTAGGAAGAAGCCTCTTGCTCAA
TGGGTCTATGAAGCGGGCTACGAGCGCTCGAACGGTCCGAACTACctgac
ggcggcggcgcagCCATCATCATTGCCGACGCGGTGCTTCTGCTCGGTTT
GCGGGTACTGGGGCTTGTACACCTGCACTCGGTGCGGGATGAGATATTGC
TCTAGCAAGTGCGCCGAAACACATAAGGAGACGAGATGTCTGAAATTTGC
GACAAGCTGAATGTCGACAAATAAAAGGTCGGCATGGGATGAAGCCATGG
GACTGGCCGGCGCCGGCATAAAGCAGaccaagaaaaagggagcTAAGCGT
TCATCAGGTCGACAAGCGGTACTGAGCAAGGCCATGCAGGTTGTGGACGA
AGAAACACGGAGAGAGGTTCGGGACGCACGGCTAGAGGCCCTTGAAGCCG
ATAACTATGTGGAAAATGCTGGAGAAGAAATGGACGAGGCCTACGTAGAC
TCCGAGgaggaagggcgcccTAAGGTCAAAAGGGAAGCTAAACGGAAGCG
CTCTATGGCGCAAAGGCAGCAAATGGCAAACAAACTCATCTCAAGTTTTA
GGAAGAAGCCTCTTGCTCAATGGGTCTATGAAGCGGGCTACGAGCGCTCG
AACGGTCCGAACTACctgacggcggcggcgcagCCATCATCATTGCCGAC
GCGGTGCTTCTGCTCGGTTTGCGGGTACTGGGGCTTGTACACCTGCACTC
GGTGCGGGATGAGATATTGCTCTAGCAAGTGCGCCGAAACACATAAGGAG
ACGAGATGTCTGAAATTTGCGACAAGCTGA back to top
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