EWM26102.1, cds4556 (CDS) Nannochloropsis gaditana

Overview
NameEWM26102.1
Unique Namecds4556
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:933543..933788 +
Alignment locationCM002463.1:933871..933953 +
Alignment locationCM002463.1:934027..934072 +
Alignment locationCM002463.1:934239..934433 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26102.1
ProductZinc finger, HIT-type
Orig transcript idgnl|cribi|Naga_100014g46.9279.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:933543..933788 +
CM002463.1supercontigCM002463.1:933871..933953 +
CM002463.1supercontigCM002463.1:934027..934072 +
CM002463.1supercontigCM002463.1:934239..934433 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Vocabulary: INTERPRO
TermDefinition
IPR007529Znf_HIT
Homology
BLAST of EWM26102.1 vs. NCBI_GenBank
Match: gi|585108096|gb|EWM26102.1| (Zinc finger, HIT-type [Nannochloropsis gaditana])

HSP 1 Score: 390.963 bits (1003), Expect = 1.188e-137
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query:    1 MSTNKRSAWDEAMGLAGAGIKQTKKKGAKRSSGRQAVLSKAMQVVDEETRREVRDARLEALEADNYVENAGEEMDEAYVDSEEEGRPKVKREAKRKRSMAQRQQMANKLISSFRKKPLAQWVYEAGYERSNGPNYLTAAAQPSSLPTRCFCSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKFATS 189
            MSTNKRSAWDEAMGLAGAGIKQTKKKGAKRSSGRQAVLSKAMQVVDEETRREVRDARLEALEADNYVENAGEEMDEAYVDSEEEGRPKVKREAKRKRSMAQRQQMANKLISSFRKKPLAQWVYEAGYERSNGPNYLTAAAQPSSLPTRCFCSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKFATS
Sbjct:    1 MSTNKRSAWDEAMGLAGAGIKQTKKKGAKRSSGRQAVLSKAMQVVDEETRREVRDARLEALEADNYVENAGEEMDEAYVDSEEEGRPKVKREAKRKRSMAQRQQMANKLISSFRKKPLAQWVYEAGYERSNGPNYLTAAAQPSSLPTRCFCSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKFATS 189          
BLAST of EWM26102.1 vs. NCBI_GenBank
Match: gi|298715429|emb|CBJ28040.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 166.007 bits (419), Expect = 7.444e-49
Identity = 96/194 (49.48%), Postives = 117/194 (60.31%), Query Frame = 0
Query:    1 MSTNKRSAWDEAMGLAGAGIKQTKKKGAKRSSGRQAVLSKAMQVVDEETRREVRDARLEALEADNYVENAGEEMDEAYV---DSEEEGRPKVKREAKRKRSMAQRQQMANKLISSFRKKPLAQWVYEAGYERSNGPNYLTAA---AQPSSLPTRCFCSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKFAT 188
            MS +KR AWD  +  +G    +TK    KR+SGR  VLSK+M+VVDEETR +V+DARLEALEADNY E+ G E D+ +    D E   RP+ +  A +      + +         + K L Q +YE   E S  P   TA    A  S  P R FCSVCGY GLYTCTRCG R+CSSKC E HKETRCLKFA+
Sbjct:    1 MSQSKRKAWDATVQASGHVPTRTK---TKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKNKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFAS 191          
BLAST of EWM26102.1 vs. NCBI_GenBank
Match: gi|669164452|ref|XP_008617788.1| (hypothetical protein SDRG_13475 [Saprolegnia diclina VS20] >gi|530730551|gb|EQC28793.1| hypothetical protein SDRG_13475 [Saprolegnia diclina VS20])

HSP 1 Score: 148.288 bits (373), Expect = 8.067e-42
Identity = 83/193 (43.01%), Postives = 115/193 (59.59%), Query Frame = 0
Query:    2 STNKRSAWDEAMGLAGAGIKQTKKKGAKRSSGRQAVLSKAMQVVDEETRREVRDARLEALEADNYVENAGEEMDEAYVDSEEEGRPKVKREAKRKRSMAQRQQMANKLISSFRK------KPLAQWVYE-AGYERSNGPNYLTAAAQPSSLPTRCFCSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKFA 187
            S N +  WD+ M  +G  +    +K   R+SGR   +SKAM++VDEETR++VR+ARL+ALEADNYVE   +  DE     E+   PK   +  + R+  + +     + SS R+      K LAQ V+E  G     GPNY+TAA +P++ P R FC VCG +  Y C RCG R+CS KC + H+ET CLKF+
Sbjct:    3 SKNAKRQWDQTMASSGLALPAAPRK---RNSGRAVKISKAMKLVDEETRKQVRNARLDALEADNYVEPTEDGEDEDLYIEEDAMGPK---KPSKSRAKGKAKAPIVPVSSSGRRRVVRKVKSLAQLVFEECGTGEGLGPNYVTAAVKPATTPPRKFCVVCGLFSNYACGRCGSRFCSVKCGDQHRETGCLKFS 189          
BLAST of EWM26102.1 vs. NCBI_GenBank
Match: gi|813191685|ref|XP_012207725.1| (hypothetical protein SPRG_13358 [Saprolegnia parasitica CBS 223.65] >gi|641527246|gb|KDO21548.1| hypothetical protein SPRG_13358 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 143.665 bits (361), Expect = 6.280e-40
Identity = 85/200 (42.50%), Postives = 119/200 (59.50%), Query Frame = 0
Query:    2 STNKRSAWDEAMGLAGAGIKQTKKKGAKRSSGRQAVLSKAMQVVDEETRREVRDARLEALEADNYVENAGEEMDE-AYVDSEEEGRPKVKREAKRKRSMAQRQQMANKLISSFRK------KPLAQWVY-EAGYERSNGPNYLTAAAQPSSLPTRCFCSVCGY------WGLYTCTRCGMRYCSSKCAETHKETRCLKFA 187
            S N +  WD+ M  +G  +    +K   R+SGR   +SKAM+ VDEETR++VR+ARL+ALEADNYVE   +  DE  Y++ +  G PK   ++ + R+  + +     + SS R+      K LAQ V+ E G     GPNY+TAA +P++ P R FC VCGY      +  Y C RCG R+CS KC + H+ET CLKF+
Sbjct:    3 SKNAKRQWDQTMASSGLALPTAPRK---RNSGRAVKISKAMKHVDEETRKQVRNARLDALEADNYVEPTEDGDDEDLYIEDDAVG-PK---KSSKSRAKGKAKAPVVPISSSGRRRVVRKVKSLAQLVFEECGTGEGLGPNYVTAAVKPATTPPRKFCVVCGYPFDRTLFSNYACGRCGSRFCSVKCGDQHRETGCLKFS 195          
BLAST of EWM26102.1 vs. NCBI_GenBank
Match: gi|567948925|gb|ETK74661.1| (hypothetical protein L915_18600 [Phytophthora parasitica] >gi|570938958|gb|ETP04215.1| hypothetical protein F441_18987 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 141.739 bits (356), Expect = 3.184e-39
Identity = 86/179 (48.04%), Postives = 111/179 (62.01%), Query Frame = 0
Query:   18 AGIKQTKKKGAKRSSGRQAVLSKAMQVVDEETRREVRDARLEALEADNYVENA----GEEM-DEAYVDSEEEGR--PKVKREAKRKRSMAQRQQMANKLISSFRKKPLAQWVYE--AGYERSNGPNYLTAAAQPSSLPTRCFCSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKFA 187
            AG + T  K  KR SGR   LS AM++VD++TR EVR+ARL+ALEADN+ E+A    G ++ DEAYVD EE G       RE  RK+   +R  +  K    ++ K LAQ V+E     + + GPNYL AAA PS+ P R FC VCG++  Y C RCG RYCS  C + HKE+ C+KF 
Sbjct:   25 AGGRHTAAK--KRLSGRTHKLSAAMRLVDDDTRNEVRNARLDALEADNFGEDADDGDGTQVGDEAYVDEEEGGTVASASGREVIRKK---RRVVVPGK--KKWKVKSLAQLVFEELGNGDNAEGPNYLAAAAGPSTHPARRFCCVCGFFANYNCRRCGSRYCSVSCGDQHKESGCMKFG 196          
BLAST of EWM26102.1 vs. NCBI_GenBank
Match: gi|570315162|gb|ETO63110.1| (hypothetical protein F444_19126 [Phytophthora parasitica P1976])

HSP 1 Score: 140.969 bits (354), Expect = 7.580e-39
Identity = 87/179 (48.60%), Postives = 110/179 (61.45%), Query Frame = 0
Query:   18 AGIKQTKKKGAKRSSGRQAVLSKAMQVVDEETRREVRDARLEALEADNYVENA----GEEM-DEAYVDSEEEGR--PKVKREAKRKRSMAQRQQMANKLISSFRKKPLAQWVYE--AGYERSNGPNYLTAAAQPSSLPTRCFCSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKFA 187
            AG + T  K  KR SGR   LS AM+ VD+ETR EVR+ARL+ALEADN+ E+A    G ++ DEAYVD EE G       RE  RK+   +R  +  K    ++ K LAQ V+E     + + GPNYL AAA PS+ P R FC VCG++  Y C RCG RYCS  C + HKE+ C+KF 
Sbjct:   25 AGGRHTAAK--KRLSGRTHKLSAAMRRVDDETRNEVRNARLDALEADNFGEDADDGDGTQVGDEAYVDEEEGGTVASASGREVIRKK---RRVVVPGK--KKWKVKSLAQLVFEELGNGDNAEGPNYLAAAAGPSTHPARRFCCVCGFFANYNCRRCGSRYCSVSCGDQHKESGCMKFG 196          
BLAST of EWM26102.1 vs. NCBI_GenBank
Match: gi|567977591|gb|ETL28091.1| (hypothetical protein L916_18503 [Phytophthora parasitica])

HSP 1 Score: 139.043 bits (349), Expect = 3.750e-38
Identity = 85/179 (47.49%), Postives = 110/179 (61.45%), Query Frame = 0
Query:   18 AGIKQTKKKGAKRSSGRQAVLSKAMQVVDEETRREVRDARLEALEADNYVENA----GEEM-DEAYVDSEEEGR--PKVKREAKRKRSMAQRQQMANKLISSFRKKPLAQWVYE--AGYERSNGPNYLTAAAQPSSLPTRCFCSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKFA 187
            AG + T  K  KR SGR   L  AM++VD++TR EVR+ARL+ALEADN+ E+A    G ++ DEAYVD EE G       RE  RK+   +R  +  K    ++ K LAQ V+E     + + GPNYL AAA PS+ P R FC VCG++  Y C RCG RYCS  C + HKE+ C+KF 
Sbjct:   25 AGGRHTAAK--KRLSGRTHKLCAAMRLVDDDTRNEVRNARLDALEADNFGEDADDGDGTQVGDEAYVDEEEGGTVASASGREVIRKK---RRVVVPGK--KKWKVKSLAQLVFEELGNGDNAEGPNYLAAAAGPSTHPARRFCCVCGFFANYNCRRCGSRYCSVSCGDQHKESGCMKFG 196          
BLAST of EWM26102.1 vs. NCBI_GenBank
Match: gi|1173935943|gb|OQR86981.1| (hypothetical protein ACHHYP_09634 [Achlya hypogyna])

HSP 1 Score: 138.272 bits (347), Expect = 1.231e-37
Identity = 85/221 (38.46%), Postives = 116/221 (52.49%), Query Frame = 0
Query:    2 STNKRSAWDEAMGLAGAGIKQTKKKGAKRSSGRQAVLSKAMQVVDEETRREVRDARLEALEADNYVENAGEEMDEAYVDSEEEGRP---KVKREAKRKR-------SMAQRQQMANKLISSFRKKPLAQWVYE--AGYERSNGPNYLTAAAQPSSLPTRCFCSVCGY------------------------WGLYTCTRCGMRYCSSKCAETHKETRCLKF 186
            S N +  WD+ M  +G  + Q  +K   R SGR   +SKAM+ VDEETR++VR+ARL+ALEADNYVE   +  DE     ++ G P    +K  AK K        S++ R+++  K+      K LA  ++E     E +  PNY+TAA +P+  P R FC VCGY                        +  YTC RCG R+CS +C + HKET CLKF
Sbjct:    3 SKNAKRQWDQTMASSGLALPQAPRK---RYSGRTVKISKAMKHVDEETRKQVRNARLDALEADNYVEPTDDGEDEDLYIEDDSGTPSKKPLKSRAKAKSKGTVVPVSISGRRRIVRKV------KSLAHLIFEECGTGEDTQRPNYITAAVKPAKTPPRHFCVVCGYPFRYSLHAACTSKTVLRSLTRRTLFSDYTCGRCGSRFCSVRCGDQHKETGCLKF 214          
BLAST of EWM26102.1 vs. NCBI_GenBank
Match: gi|698806312|ref|XP_009836185.1| (hypothetical protein H257_11047 [Aphanomyces astaci] >gi|574109022|gb|ETV74527.1| hypothetical protein H257_11047 [Aphanomyces astaci])

HSP 1 Score: 137.502 bits (345), Expect = 1.459e-37
Identity = 77/186 (41.40%), Postives = 109/186 (58.60%), Query Frame = 0
Query:    4 NKRSAWDEAMGLAGAGIKQTKKKGAKRSSGRQAVLSKAMQVVDEETRREVRDARLEALEADNYVENA-GEEMDEAYVDSEEEGRPKVKREAKRKRSMAQRQQMANKLISSFRKKPLAQWVYEAGYE--RSNGPNYLTAAAQPSSLPTRCFCSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKF 186
            N +  WD+ M  +G  +  + K   KR SGR   +SKAM+ VDEETRR+VR+ARL+ALEADNY+E+  G + D   +D +++ +   K ++K K +  Q  Q   +     + K L Q ++E   +   S   NY+TAA +P+  P R FC VCG    YTC RCG ++C  +C   HKET CLKF
Sbjct:    5 NAKRQWDQTMASSGLAVPGSAKVSRKRFSGRTVKISKAMKHVDEETRRQVRNARLDALEADNYMESTDGADEDMFVLDDDDDAKKPTKPKSKAKANKHQVPQALGRHRMVRKVKSLRQLIFEECGDGMSSTDINYVTAAVKPAKTPPRHFCCVCGLLSSYTCGRCGSKFCCVRCGNQHKETGCLKF 190          
BLAST of EWM26102.1 vs. NCBI_GenBank
Match: gi|695384089|ref|XP_009517902.1| (hypothetical protein PHYSODRAFT_476336 [Phytophthora sojae] >gi|348690813|gb|EGZ30627.1| hypothetical protein PHYSODRAFT_476336 [Phytophthora sojae])

HSP 1 Score: 134.806 bits (338), Expect = 5.727e-37
Identity = 74/163 (45.40%), Postives = 101/163 (61.96%), Query Frame = 0
Query:   32 SGRQAVLSKAMQVVDEETRREVRDARLEALEADNYVENAGE-----EMDEAYVDSEEEGRPKVKREAKRKRSMAQRQQMANKLISSFRKKPLAQWVYE--AGYERSNGPNYLTAAAQPSSLPTRCFCSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKFA 187
            +GR   LS AM+ VD++TR EVR+ARL+ALEADN+ E+A E     + DEAYVD EE G       A  +  + +++++A      ++ K LAQ V+E     + + GPNYLTAA  P + P R FC VCG++  Y C RCG RYCS  C + HKE+ C+KF 
Sbjct:    4 AGRTHKLSAAMRRVDDDTRNEVRNARLDALEADNFGEDADEGDGTQDGDEAYVDEEEGG---AGTAASGREPVRKKRRVAASSKKKWKVKSLAQLVFEELGNGDNAEGPNYLTAAVGPPTHPPRRFCCVCGFFANYNCRRCGSRYCSVGCGDQHKESGCMKFG 163          
The following BLAST results are available for this feature:
BLAST of EWM26102.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108096|gb|EWM26102.1|1.188e-137100.00Zinc finger, HIT-type [Nannochloropsis gaditana][more]
gi|298715429|emb|CBJ28040.1|7.444e-4949.48conserved unknown protein [Ectocarpus siliculosus][more]
gi|669164452|ref|XP_008617788.1|8.067e-4243.01hypothetical protein SDRG_13475 [Saprolegnia dicli... [more]
gi|813191685|ref|XP_012207725.1|6.280e-4042.50hypothetical protein SPRG_13358 [Saprolegnia paras... [more]
gi|567948925|gb|ETK74661.1|3.184e-3948.04hypothetical protein L915_18600 [Phytophthora para... [more]
gi|570315162|gb|ETO63110.1|7.580e-3948.60hypothetical protein F444_19126 [Phytophthora para... [more]
gi|567977591|gb|ETL28091.1|3.750e-3847.49hypothetical protein L916_18503 [Phytophthora para... [more]
gi|1173935943|gb|OQR86981.1|1.231e-3738.46hypothetical protein ACHHYP_09634 [Achlya hypogyna... [more]
gi|698806312|ref|XP_009836185.1|1.459e-3741.40hypothetical protein H257_11047 [Aphanomyces astac... [more]
gi|695384089|ref|XP_009517902.1|5.727e-3745.40hypothetical protein PHYSODRAFT_476336 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4568rna4568Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications