rna4565, rna4565 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4565
Unique Name	rna4565
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2742
Alignment location	CM002463.1:929235..930743 -

Link to JBrowse

Properties


Property Name	Value
Product	proteasome subunit alpha type 7
Orig transcript id	gnl\|cribi\|Naga_100014g43.9330.mrna
Orig protein id	gnl\|cribi\|Naga_100014g43.9330
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:929235..930743 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100014g43	gene4404	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4565	rna4565-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26153.1	cds4553	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:929235..930743-
coding sequence from alignment at CM002463.1:929235..930743-

mRNA sequence

>rna4565 ID=rna4565|Name=rna4565|organism=Nannochloropsis gaditana|type=mRNA|length=2742bp
TCATTTTATTGTGGGCTCTGGTATTCTTCATATCTTCAACATCAGGTTTG
TAATAAATGGTAATCCCCAGAGGCCAAAGCGTGAATGAGTAGGTGCTTGT
GGTTTAACTCGAGAACGCGCGGCTAATTGCGACTCTACCTCCCCTGCCCT
ACGCTCTCTGCCTCTACGACTGCTCAAGCACTCTATATTACCGCATAACA
CAAGTAGTACAGGCATTCATTGACATGCAGCGGAAAATTATGTTGCCAGG
AACAGAGGCTCCTGTTTTTGTTGCCCATTGACGACCAAACAACCAGCATG
CGCCTCCTTCTTTCCCTCCTCACCGTTGGGGCGCTCTCAAGAAGGACGAC
AACCTATGCCTTCAGATTCATCCCCTTCCTCGCCACTCGTCCAGCACCAC
CGCATCTCTGTTCAATATCCGCTTTACGTTTTTCCAACCCATACCGCCAT
GAATCCAGAGAGAAGACAGGTCAGAGTCGGATGCCCCATCCATCTCCTAC
AACCCTCCTGCCGCACGCACAACAGCCGCCACATGGGAAGGGCAAATCTC
CATCACCCCTCGTTGAATGGTCGTTAAGGCGCGTAGGAACAACCCCTGCG
ATCGATCTTCTGGAAAACGCTCTGGAGGAGGATCGATTAACCAATCTTGG
GGTGGGTGACGACGAAGGGCTCCTCACGGCCGCGCTCAAAGAATGCCGCT
CTATTGGCGACGGTAGACGAGCACTCAGGTATCTAGGCATGGTAAACGAT
TATCAACTTCGAGAGATAGATTGCGTGTCCACAATCTATGCATGTGCGGC
CGAGGGTCTGACGGACGAGGCTGTCAGTGTCTTCCGTCGGCTGGCAAGGA
GGAAGAGAGGGCCCGTCCGAGCTTGGGGTCCGCCGTGTTACGTCGCCATC
ATCGTGGCCTGCAGCAAGGGCGGTCGACCAGAGGATGCGGTGGCGTTTTT
TTCAGAGATGGGGGTGAACGGGGAGCCGGCCCCAGACGCAGCCTGCTACG
CCGCCATGATGGAGACCTACCGCCGGTCCGGGCGCGCCTCCGAGGCCTTG
GCCCTCCTGGAGGACCTGAAGGCGTGCGGGATGGCCGAGGCTCCTGGGAG
GCCGGCACCTCGAGGGTCACACTTGGTCCTGGCCGCCACGATCCGGGCCC
TCACGGACCTGGGCCGCCCAGCCGAAGCCTTGGAGCGCTTCGACCAGGCT
CGGGGGCTGGCGTCAGGGGTCATTCCGGACGGCGGGTGCTACGGGGCGGC
GCTGGAGGCCGCGGCCGACCTGGGCGACTGGAGACGGGCGCTGCATTTAA
TCGAGGAGATGGGTCGGGAAGTGGAATACAAGAACGTTCGAGGCACGTTC
GTCCGGCGGCAGCTCCGGGTCGGGCGTCAGCATTATGTGGCGGCGATGAG
GGCCTGTGCCAAAGCAGGGGAGAGCGAGCAGGCGCTGGCGCTCCTACGAG
ACATGCGGACGCGCGGTGGGGTCCGACCAGATGAGAAGTGCCATCGGTGG
GCCCTCTTTGCCTGTTGTCAAGACGCACAGTGGCGCCGCGCCTACGCGAT
GCTCCTGGAGGGCCCCGCCCCGCCATCCTGCGACGCCCCGTGGACCCTGC
CCTGTTACACGACCACCATGCGGGCACTAGTCAGGGTAGGTCAGACAGAG
GAGGTGCTGGCCCTCTGGGATCTCCTTCTCGTCCGAGGATTGGCTCCTGA
CGCGGGCACGGGGGACATCGCCCTGAGCGTGGCTGGGAAGCAGAAAAAGT
GGGAGCTCGTCAAGGCCATATTCGACGAGCTCCAGGGCCGCGGAGTGGAG
CCTTACGAGGCCGGGATAGGCGTCGTCATCGAAGGTCTGTGTCAGCAGGG
GCAGCTAAAGGAAGCTCTCGCTTTTTTGCGGCAGGTGTCGGCGCCCAACG
TGATCATGTTCACCAGCGTCTTGTCCGGCATGGGCCGAGCGGGGGAGCTT
GCGGGCGCGCTGGCCTTGTTGGAGGAGATGGAGACAAAGGCAGGCGTGAC
GCCGGACCACGTGGCGTTGACCTGTCTCGTGGACGCGTGCCTGAAAGCGG
GTGACGTGGAGAACGCCGGCCGGCTCGCCTCCCGCCTGGAGGCAAACGCA
TTGGCGCAGGTCGATTGCCCGGGCCAGGCCGAGGGGATGCAGGAGGACGA
GCGAAGTTTTGGGGTGCGTGTGCGGACAATGCTGGAGCAAGGGTACTGGG
AGGACGCTTGGCGCACCATCAAGGATGCGGAGACAGTGGAGGGCCACGTC
CCGGTCCCCGCCATGTCCTACAGCGTGCTCTTGAACGCCGCTGCGAAGGA
AGGGCGCTGGCGAGACGCATTGGAAATGCTCCTGCACATGCGTGAGAAGC
GAGGACTGGAGCCGAGTACGGTTGACCTGTCATCGGCTATCAACGCGTGT
CGGGTAGGGGGGGAAACGCGGACGGCCTTAAAGCTCCTCGAACTCCTCGA
CCTCCGACGCCGGGCACGGGGCCGCCTCGGGAAGCGCGCGGCGGAGCCAT
GCCACAGAAATGGCGGGAAAGTCTTGCCGCGAAGAGAGGTGGCGGAGAGC
GAGGAAGATCTCAGTCCCTACCAAGTTACTTACGGATTGGTCTTGGACCT
TCTCGCGAGGCAAGCCTCCTCTGCCTCCCAGACCCCTCCTTGAGGGGCGA
GACGTTTGACGGGAAAGCCTCCATTTCAAGTGTACAAAGAGCACAAACGG
AAGATTGAAAAATCGATAAGACAAGATACAAGTACGAAAGCA

protein sequence of rna4565

>rna4565-protein ID=rna4565-protein|Name=rna4565|organism=Nannochloropsis gaditana|type=polypeptide|length=254bp
MASRYDRAITVFSPDGHLFQVEYAIEAVKRGSSAVGVRGKSSVILGVERR
ATAKLQDPRTIKKICKIDEHVTLAFAGLTADARVLVNKARLECQSYRLTY
EDAPTVEYVARYIARTQQKYTQRGGVRPFGVSCVIAGTNPDGSAVLYQTD
PAGTYSAWKATAVGGRNSSNMQEYLEKQWADDLEEENAIRLTVKTLLEVV
DSGAKNMEVAVITQGRPMRMLDEATLAALSASIEAEQEEAKKKASAGSGE
SKES

mRNA from alignment at CM002463.1:929235..930743-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4565 ID=rna4565|Name=rna4565|organism=Nannochloropsis gaditana|type=mRNA|length=1509bp|location=Sequence derived from alignment at CM002463.1:929235..930743- (Nannochloropsis gaditana)
TCAACAGGCGCAGTTATGCTACAACCCATGCACCATGTCCAACTGAGACC
TTGGCAACTAAACATGTGAAAATATCCCACGTCCTTCCCGTTCATGGAAT
CGGAGTGGCGGAATCACGGGGTAGGCAGGTCGTTCTTGACCACAGGGGGA
GGGCGGCAGTGAGAAGGACGCCGTCGCTCGAGAAGAAGCTTGCCGTCTTC
CGCTCTCTCGCCCCGGTCGTGCTGCTTTCTTGGTTTGCCTTGGTGAGATC
TCTTTCACTCGCTCATCGCATCTTCTTAACAATCACAGCTCTACTTGACC
CCTTTCGACTGAGGGCGCTCCTTTAGTCATGGCAAGTCGGTACGTATTTA
ATGAAGAAGACGACGAATTCTAGCGATAGGCCTCCATTTGCTCCCTGCGT
CCCGCAATGCCCTTTTCTCTGGGCAATTTGGTCACAATCTTTCCGACATC
GATGTATATTCATATTCATATCCATAATATGTATGATATTCATGTTACGA
GGGAAGACCTTCTTACTCTGTGACCGCAGTGAGATTCCAGGATATTATGA
TCCTATCAGGCCGCTCTGCATTATATAGGACCTGGCCGTTTTTTTTTCTC
CATTTGTACAGATGTATTTTGTTCACTCTCATGAACCATTATTCCCTTTT
GAACATTTCCGAACACAGGTATGACCGTGCAATTACTGTTTTCTCGCCGG
ATGGGCACTTGTTTCAAGTGGAGTATGCCATAGAAGCTGTCAAACGAGGG
TCGTCTGCAGTCGGCGTACGGGGGAAGAGTTCTGTTATTCTGGGGGTGGA
GCGTCGCGCAACAGCGAAATTGCAGGATCCTCGTACCATAAAGAAGATTT
GTAAGATTGATGAGCATGTGACGCTGGCGTTTGCGGGGCTGACGGCGGAT
GCGCGCGTGCTCGTGAATAAGGCCCGCCTGGAGTGTCAGAGCTACCGGCT
CACGTACGAGGACGCGCCCACAGTAGAGTATGTGGCGCGATACATTGCAC
GCACCCAGCAGAAGTACACACAACGGGGGGGAGTGCGGCCATTCGGCGTC
TCGTGTGTCATCGCAGGGACCAACCCCGACGGCAGTGCCGTGCTTTATCA
GACCGATCCTGCTGGCACCTATTCGGCGTGGAAGGCGACAGCCGTGGGCG
GCCGAAACTCTTCCAACATGCAAGAGTATCTTGAAAAGCAGTGGGCGGAT
GACCTGGAGGAAGAAAATGCCATCCGCTTGACGGTCAAGACACTGCTGGA
GGTGGTGGACTCCGGGGCCAAGAACATGGAGGTTGCCGTCATCACGCAGG
GTCGGCCCATGCGTATGCTGGACGAGGCCACGCTGGCAGCACTCTCCGCC
TCCATCGAAGCGGAACAGGAGGAAGCAAAGAAGAAAGCGAGTGCGGGATC
AGGGGAGAGTAAAGAAAGCTAGGCAAGAGAAAGGGGTTCAACGGCACGTA
TACGAGGAGGGACCGGCAGGCTTAAGATGAAAAGAAAAATGCAAGCTGCG
CGCATGTGC

Coding sequence (CDS) from alignment at CM002463.1:929235..930743-

>rna4565 ID=rna4565|Name=rna4565|organism=Nannochloropsis gaditana|type=CDS|length=1530bp|location=Sequence derived from alignment at CM002463.1:929235..930743- (Nannochloropsis gaditana)
GTATGACCGTGCAATTACTGTTTTCTCGCCGGATGGGCACTTGTTTCAAG
TGGAGTATGCCATAGAAGCTGTCAAACGAGGGTCGTCTGCAGTCGGCGTA
CGGGGGAAGAGTTCTGTTATTCTGGGGGTGGAGCGTCGCGCAACAGCGAA
ATTGCAGGATCCTCGTACCATAAAGAAGATTTGTAAGATTGATGAGCATG
TGACGCTGGCGTTTGCGGGGCTGACGGCGGATGCGCGCGTGCTCGTGAAT
AAGGCCCGCCTGGAGTGTCAGAGCTACCGGCTCACGTACGAGGACGCGCC
CACAGTAGAGTATGTGGCGCGATACATTGCACGCACCCAGCAGAAGTACA
CACAACGGGGGGGAGTGCGGCCATTCGGCGTCTCGTGTGTCATCGCAGGG
ACCAACCCCGACGGCAGTGCCGTGCTTTATCAGACCGATCCTGCTGGCAC
CTATTCGGCGTGGAAGGCGACAGCCGTGGGCGGCCGAAACTCTTCCAACA
TGCAAGAGTATCTTGAAAAGCAGTGGGCGGATGACCTGGAGGAAGAAAAT
GCCATCCGCTTGACGGTCAAGACACTGCTGGAGGTGGTGGACTCCGGGGC
CAAGAACATGGAGGTTGCCGTCATCACGCAGGGTCGGCCCATGCGTATGC
TGGACGAGGCCACGCTGGCAGCACTCTCCGCCTCCATCGAAGCGGAACAG
GAGGAAGCAAAGAAGAAAGCGAGTGCGGGATCAGGGGAGAGTAAAGAAAG
CTAGATGGCAAGTCGGTATGACCGTGCAATTACTGTTTTCTCGCCGGATG
GGCACTTGTTTCAAGTGGAGTATGCCATAGAAGCTGTCAAACGAGGGTCG
TCTGCAGTCGGCGTACGGGGGAAGAGTTCTGTTATTCTGGGGGTGGAGCG
TCGCGCAACAGCGAAATTGCAGGATCCTCGTACCATAAAGAAGATTTGTA
AGATTGATGAGCATGTGACGCTGGCGTTTGCGGGGCTGACGGCGGATGCG
CGCGTGCTCGTGAATAAGGCCCGCCTGGAGTGTCAGAGCTACCGGCTCAC
GTACGAGGACGCGCCCACAGTAGAGTATGTGGCGCGATACATTGCACGCA
CCCAGCAGAAGTACACACAACGGGGGGGAGTGCGGCCATTCGGCGTCTCG
TGTGTCATCGCAGGGACCAACCCCGACGGCAGTGCCGTGCTTTATCAGAC
CGATCCTGCTGGCACCTATTCGGCGTGGAAGGCGACAGCCGTGGGCGGCC
GAAACTCTTCCAACATGCAAGAGTATCTTGAAAAGCAGTGGGCGGATGAC
CTGGAGGAAGAAAATGCCATCCGCTTGACGGTCAAGACACTGCTGGAGGT
GGTGGACTCCGGGGCCAAGAACATGGAGGTTGCCGTCATCACGCAGGGTC
GGCCCATGCGTATGCTGGACGAGGCCACGCTGGCAGCACTCTCCGCCTCC
ATCGAAGCGGAACAGGAGGAAGCAAAGAAGAAAGCGAGTGCGGGATCAGG
GGAGAGTAAAGAAAGCTAGATGGCAAGTCG

Synonyms

Publications