rna4561, rna4561 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4561
Unique Name	rna4561
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1160
Alignment location	CM002463.1:918171..920684 +

Link to JBrowse

Properties


Property Name	Value
Product	phd-finger family homeodomain protein
Orig transcript id	gnl\|cribi\|Naga_100014g39.9280.mrna
Orig protein id	gnl\|cribi\|Naga_100014g39.9280
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:918171..920684 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100014g39	gene4400	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4561	rna4561-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26103.1	cds4549	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:918171..920684+
coding sequence from alignment at CM002463.1:918171..920684+

mRNA sequence

>rna4561 ID=rna4561|Name=rna4561|organism=Nannochloropsis gaditana|type=mRNA|length=1160bp
TTCGGTTCCGAGGGTCATTGACCAGCGTGCATTCACTCGCCTGAATCCTG
TTGACGGATATTTTTTCACGAATAAGATGTGAAGACTCGGAAGTTGGGGA
GTGCCATGCCCTATGCTGGCTTCGAAAGCGCCCGCATCGAAGCAGCAGAA
GCAATAGGATGGTGTCGTCGCCTGCTGTGTTTAACCTCCTGGTGCCTCAC
CACGCCTTCACACGGCGTCCGACAGGGATATATTAGCATGACGAGTCCGG
GAATAAGAACCAAGGCCTCTCATTACCGTACTATTCTGAGTGTATCGTCC
TATTTCAAGCTTCCCGAGCAAGGAATGAAAGATTATGAGCTTCTCAGCCA
GGGAACCGGGTTTTGTTTATCCGGTCCACCAGCTTTGTCTACCAAAGTCA
TCCTTTTAAGTTGCTCGCACGTCCTTGCGCCGTACAGATGGCAGCAATAC
TTCAAAAAGCCCTGGCTTAAATTTGTAAAAGATGAGCACGTTGAAAGAAG
GATTAAGATTTGGACGTATGAGGCGGGAAACCCAGAAGCGGGACGATGGA
GCAACGAAGCAAGAATAGAGGGGACTCCAGCTCACCATAGTTGTCTGGAC
CTGTGTATTATCCCTTTGGAAAATGGTATAGTTGAAACCTGTGCATTGGT
ACCTTACGATGAGAGGGACGACGGAGAAGTAATGATCGAAAAGGAGAATT
TGACATTCCTGGGATTCCCTTCTACCGACACAATCAACATCGACAAGAAG
GCTTGCCTGATGCACATACAAGGAAAGGCGCTTCTATCTTTTTCTGACAC
ACAGGGTCGGACGTATGCCAAGACGAAAGAAAGACTGGTAGTGGGAATGA
GTGGTGGGCCTGTGCTCGACGGCTCTGGACGATTTTGTGGCCTCTTCCAG
GGAATTTTGCCTCCGGCGCCCCGAACGCCAGAAGAGGAGAGGCAGCAAGC
CGACGGTGGCCTCGACCCCGTCCTTCGGCCACTACAAATAAGAAATTCAG
AGCTGCACGCAGCTTTCATTCCTCAATTTGCAATTCGAGAGTACATAAAT
AGCGCAGTAATCAAATGAAAATCGTCCAGCAATTTTCGGATACTCGCCAT
TACATTCGTACAGTTACATTTTGAGTATACATTCAGCAGCATAAGAATTT
AATTCTCTCT

protein sequence of rna4561

>rna4561-protein ID=rna4561-protein|Name=rna4561|organism=Nannochloropsis gaditana|type=polypeptide|length=837bp
MANNYIAGQIGKNRGRSRGSTPRGGILPSEQRKRSRQDSSEEGRSVTAAT
NAPEPCLKRSRFMGVTGAGAAINSVLKSADPSSYRSKRKTTTKINASNEE
MNIDESDTGANTKCIDDADQKTDDRLKSGVVLNMRRKVAAAKKGLLEALA
RLVSGHRQKEGPLEKADTRRSAHFSSIQSLKRPKKPIQSPNEASTDSEAA
QYLPISKDSESAALKASPRLSLNPRHRCSKAGILSKDQILASTLHAGAEV
KERGPDERPVRSTKSLSTERKDRGDMGPSTSARQQERKRRNKRQQKEKHS
LRLALKGRRHYNAEGVVDEEATRWALPSRKRALGRQVYDKQGYDRSEGQH
DDAKDGKGEQSNAGKGKRSGRQAGASKRSTRSRAGDPRAAQDSRLKSAPS
KGAEASTTRRRHKNDKHDYSHAHSMRMFEEGKKEGRGRKKEKRPPLEEES
EADERPRPRRHSFPPLQTRSRTRVKRSSRLARKDRRVYGKDGFRVVTQES
CAELPTEARAGRKRMRRKRRAWVKGVVTVQAPEDILGQRAKRHLKALGDN
LFTLKALSDRWAGTANVEADERHVPLRQTRTEAEAKLTTAKRQLRESMAQ
LLNLYKEEALEDSDWEAEEATCAVCGGGEATDENDIAICDKCRVPYHQDC
HAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLDAYGVEEERARTFRRV
QSLLEDADDSKAEGADHEESEEEDSDYVTEESEDEDEDEDSGSEDGSGED
EERGGGGSSDNGSRSAALSNDKVGQKLRAVRKEEAPRKCQNNRKQDKESY
ARARSSSTGSYHSSEDEDFDSDNSSYSSGDSFDSDFY

mRNA from alignment at CM002463.1:918171..920684+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4561 ID=rna4561|Name=rna4561|organism=Nannochloropsis gaditana|type=mRNA|length=2514bp|location=Sequence derived from alignment at CM002463.1:918171..920684+ (Nannochloropsis gaditana)
ATGGCGAATAATTATATTGCCGGGCAGATTGGAAAAAATCGTGGTCGAAG
CCGAGGTTCTACTCCACGTGGGGGAATCCTCCCTTCAGAACAGCGAAAGC
GGTCGCGGCAAGACTCgtcagaggagggaaggagtgtcACGGCCGCGACC
AATGCACCAGAGCCTTGCCTCAAGCGAAGTCGGTTTATGGGCGTCACAGG
CGCAGGAGCTGCTATCAATAGTGTTCTCAAAAGTGCGGACCCGTCATCTT
ATCGTTCTAAGCGCAAAACTACGACCAAAATAAATGCCAGTAACGAAGAG
ATGAATATTGATGAGAGCGACACAGGTGCGAATACAAAATGCATTGATGA
TGCCGACCAAAAAACTGACGATCGGCTCAAGTCAGGCGTGGTACTTAATA
TGCGGAGGAAAGTTGCAGCTGCGAAGAAAGGACTGTTGGAAGCTCTGGCT
CGATTAGTTAGCGGCCATCGACAGAAAGAGGGCCCTTTGGAGAAAGCGGA
CACCCGACGATCGGCTCATTTTTCGTCAATCCAATCTCTAAAAAGACCTA
AAAAGCCCATCCAAAGCCCAAATGAGGCGTCGACAGACAGTGAGGCAGCG
CAGTACCTCCCGATCTCGAAAGATTCGGAGTCGGCTGCCCTCAAAGCATC
CCCGCGCCTCTCTCTCAATCCTCGTCATCGCTGCAGTAAAGCAGGAATCC
TATCAAAGGATCAAATCTTGGCTTCCACGCTCCATGCTGGTGCTGAagtg
aaagaaagggggcctGACGAAAGGCCAGTCCGGTCGACGAAGTCCTTGAg
cacggagaggaaggatCGTGGCGATATGGGCCCAAGCACCTCCGCACGTC
AACAAGAGAGAAAGCGCAGAAATAAGAGGCAAcagaaggagaagcactCC
TTGCGGCTGGCACTCAAAGGACGGCGTCACTACAATGCGGAGGGGGTTgt
agacgaggaggcgaccagATGGGCGCTCCCGTCGAGAAAACGAGCCCTGG
GGAGGCAGGTATATGACAAACAGGGATATGACAGATCGGAGGGACAACAC
GACGACGCgaaagatgggaagggagagcaatCAAAcgcagggaaaggaaa
aaggtcAGGAAGGCAAGCAGGTGCTAGCAAAAGGAGCACACGATCACGGG
CAGGGGATCCACGAGCCGCGCAGGACTCTCGCCTCAAGTCCGCGCCCAGC
AAAGGGGCTGAGGCCTCCACAACTCGAAGGCGTCATAAGAATGACAAACA
TGATTATTCTCATGCGCACTCCATGCGCATGtttgaggaggggaagaagg
aaggaagggggaggaagaaggagaagaggccgccgcttgaggaggagtcg
GAGGCGGATGagcgccctcgccctcgccgtcaTTCGTTCCCTCCGCTGCA
AACACGCTCAAGGACGAGAGTAAAGAGGTCAAGCAGACTGGCCAGAAAGG
ATCGACGCGTCTATGGAAAGGATGGCTTTCGCGTGGTGACGCAGGAATCT
TGTGCAGAGCTTCCCACAGAGGCGAGGGCAGGCCGCAAGAGGATGCGACG
AAAGCGAAGGGCCTGGGTGAAAGGGGTCGTAACGGTACAAGCGCCCGAAG
ATATCCTCGGCCAACGCGCCAAAAGGCATTTGAAGGCACTGGGGGACAAT
CTCTTCACGCTCAAGGCCCTTTCGGATCGGTGGGCGGGCACAGCCAacgt
ggaggcggacgagcggCATGTCCCCTTGCGCCAAacgaggacggaggcag
aggccaaaTTGACGACAGCCAAGCGTCAACTCCGCGAGTCTATGGCACAG
CTGTTGAACCTTTACAAAGAGGAGGCTCTGGAAGACAGTGActgggaggc
agaggaggccACCTGCGCTGtatgcggggggggggaggcgacggacgAGA
ATGACATTGCAATCTGTGACAAATGTCGCGTCCCCTACCACCAAGACTGC
CACGCTCCACCCCTCCGGCCTGAAGAccttggcgaggaggaggatgagtg
GTGGTGCAGTCGATGCGAGCTTGTCTATGATCGGCTCTCGAACGCCGTGC
TGGACGCCTacggggtcgaggaggagcgcgcaCGGACTTTTCGTCGGGTA
CAAAGCCTGCTCGAGGACGCAGATGACAGCAAAGCTGAAGGCGCCGACCA
TGAGGAgagtgaagaggaagattcAGATTATGTCAcggaggaaagtgagg
acgaggacgaggacgaagactCAGGCTCCGAGGACGGCAgtggggaagac
gaggagcgggGTGGCGGTGGTAGTAGCGACAATGGGAGTCGCAGTGCGGC
CTTATCAAATGACAAAGTAGGTCAAAAGCTTCGGGCTgtaagaaaggaag
aagcgccCAGAAAATGTCAAAATAACCGCAAACAGGATAAGGAGAGCTAT
GCGCGTGCGCGGAGCAGCAGTACTGGAAGCTATCACtcaagcgaggacga
ggacttCGACAGCGATAATTCTTCATATTCATCCGGAGATAGCTTTGACT
CGGACTTTTATTAG

Coding sequence (CDS) from alignment at CM002463.1:918171..920684+

>rna4561 ID=rna4561|Name=rna4561|organism=Nannochloropsis gaditana|type=CDS|length=2514bp|location=Sequence derived from alignment at CM002463.1:918171..920684+ (Nannochloropsis gaditana)
ATGGCGAATAATTATATTGCCGGGCAGATTGGAAAAAATCGTGGTCGAAG
CCGAGGTTCTACTCCACGTGGGGGAATCCTCCCTTCAGAACAGCGAAAGC
GGTCGCGGCAAGACTCgtcagaggagggaaggagtgtcACGGCCGCGACC
AATGCACCAGAGCCTTGCCTCAAGCGAAGTCGGTTTATGGGCGTCACAGG
CGCAGGAGCTGCTATCAATAGTGTTCTCAAAAGTGCGGACCCGTCATCTT
ATCGTTCTAAGCGCAAAACTACGACCAAAATAAATGCCAGTAACGAAGAG
ATGAATATTGATGAGAGCGACACAGGTGCGAATACAAAATGCATTGATGA
TGCCGACCAAAAAACTGACGATCGGCTCAAGTCAGGCGTGGTACTTAATA
TGCGGAGGAAAGTTGCAGCTGCGAAGAAAGGACTGTTGGAAGCTCTGGCT
CGATTAGTTAGCGGCCATCGACAGAAAGAGGGCCCTTTGGAGAAAGCGGA
CACCCGACGATCGGCTCATTTTTCGTCAATCCAATCTCTAAAAAGACCTA
AAAAGCCCATCCAAAGCCCAAATGAGGCGTCGACAGACAGTGAGGCAGCG
CAGTACCTCCCGATCTCGAAAGATTCGGAGTCGGCTGCCCTCAAAGCATC
CCCGCGCCTCTCTCTCAATCCTCGTCATCGCTGCAGTAAAGCAGGAATCC
TATCAAAGGATCAAATCTTGGCTTCCACGCTCCATGCTGGTGCTGAagtg
aaagaaagggggcctGACGAAAGGCCAGTCCGGTCGACGAAGTCCTTGAg
cacggagaggaaggatCGTGGCGATATGGGCCCAAGCACCTCCGCACGTC
AACAAGAGAGAAAGCGCAGAAATAAGAGGCAAcagaaggagaagcactCC
TTGCGGCTGGCACTCAAAGGACGGCGTCACTACAATGCGGAGGGGGTTgt
agacgaggaggcgaccagATGGGCGCTCCCGTCGAGAAAACGAGCCCTGG
GGAGGCAGGTATATGACAAACAGGGATATGACAGATCGGAGGGACAACAC
GACGACGCgaaagatgggaagggagagcaatCAAAcgcagggaaaggaaa
aaggtcAGGAAGGCAAGCAGGTGCTAGCAAAAGGAGCACACGATCACGGG
CAGGGGATCCACGAGCCGCGCAGGACTCTCGCCTCAAGTCCGCGCCCAGC
AAAGGGGCTGAGGCCTCCACAACTCGAAGGCGTCATAAGAATGACAAACA
TGATTATTCTCATGCGCACTCCATGCGCATGtttgaggaggggaagaagg
aaggaagggggaggaagaaggagaagaggccgccgcttgaggaggagtcg
GAGGCGGATGagcgccctcgccctcgccgtcaTTCGTTCCCTCCGCTGCA
AACACGCTCAAGGACGAGAGTAAAGAGGTCAAGCAGACTGGCCAGAAAGG
ATCGACGCGTCTATGGAAAGGATGGCTTTCGCGTGGTGACGCAGGAATCT
TGTGCAGAGCTTCCCACAGAGGCGAGGGCAGGCCGCAAGAGGATGCGACG
AAAGCGAAGGGCCTGGGTGAAAGGGGTCGTAACGGTACAAGCGCCCGAAG
ATATCCTCGGCCAACGCGCCAAAAGGCATTTGAAGGCACTGGGGGACAAT
CTCTTCACGCTCAAGGCCCTTTCGGATCGGTGGGCGGGCACAGCCAacgt
ggaggcggacgagcggCATGTCCCCTTGCGCCAAacgaggacggaggcag
aggccaaaTTGACGACAGCCAAGCGTCAACTCCGCGAGTCTATGGCACAG
CTGTTGAACCTTTACAAAGAGGAGGCTCTGGAAGACAGTGActgggaggc
agaggaggccACCTGCGCTGtatgcggggggggggaggcgacggacgAGA
ATGACATTGCAATCTGTGACAAATGTCGCGTCCCCTACCACCAAGACTGC
CACGCTCCACCCCTCCGGCCTGAAGAccttggcgaggaggaggatgagtg
GTGGTGCAGTCGATGCGAGCTTGTCTATGATCGGCTCTCGAACGCCGTGC
TGGACGCCTacggggtcgaggaggagcgcgcaCGGACTTTTCGTCGGGTA
CAAAGCCTGCTCGAGGACGCAGATGACAGCAAAGCTGAAGGCGCCGACCA
TGAGGAgagtgaagaggaagattcAGATTATGTCAcggaggaaagtgagg
acgaggacgaggacgaagactCAGGCTCCGAGGACGGCAgtggggaagac
gaggagcgggGTGGCGGTGGTAGTAGCGACAATGGGAGTCGCAGTGCGGC
CTTATCAAATGACAAAGTAGGTCAAAAGCTTCGGGCTgtaagaaaggaag
aagcgccCAGAAAATGTCAAAATAACCGCAAACAGGATAAGGAGAGCTAT
GCGCGTGCGCGGAGCAGCAGTACTGGAAGCTATCACtcaagcgaggacga
ggacttCGACAGCGATAATTCTTCATATTCATCCGGAGATAGCTTTGACT
CGGACTTTTATTAG

Synonyms

Publications