EWM26103.1, cds4549 (CDS) Nannochloropsis gaditana

Overview
NameEWM26103.1
Unique Namecds4549
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:918171..920684 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26103.1
Productphd-finger family homeodomain protein
Orig transcript idgnl|cribi|Naga_100014g39.9280.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:918171..920684 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR001965Znf_PHD
Homology
BLAST of EWM26103.1 vs. NCBI_GenBank
Match: gi|585108097|gb|EWM26103.1| (phd-finger family homeodomain protein [Nannochloropsis gaditana])

HSP 1 Score: 1700.64 bits (4403), Expect = 0.000e+0
Identity = 837/837 (100.00%), Postives = 837/837 (100.00%), Query Frame = 0
Query:    1 MANNYIAGQIGKNRGRSRGSTPRGGILPSEQRKRSRQDSSEEGRSVTAATNAPEPCLKRSRFMGVTGAGAAINSVLKSADPSSYRSKRKTTTKINASNEEMNIDESDTGANTKCIDDADQKTDDRLKSGVVLNMRRKVAAAKKGLLEALARLVSGHRQKEGPLEKADTRRSAHFSSIQSLKRPKKPIQSPNEASTDSEAAQYLPISKDSESAALKASPRLSLNPRHRCSKAGILSKDQILASTLHAGAEVKERGPDERPVRSTKSLSTERKDRGDMGPSTSARQQERKRRNKRQQKEKHSLRLALKGRRHYNAEGVVDEEATRWALPSRKRALGRQVYDKQGYDRSEGQHDDAKDGKGEQSNAGKGKRSGRQAGASKRSTRSRAGDPRAAQDSRLKSAPSKGAEASTTRRRHKNDKHDYSHAHSMRMFEEGKKEGRGRKKEKRPPLEEESEADERPRPRRHSFPPLQTRSRTRVKRSSRLARKDRRVYGKDGFRVVTQESCAELPTEARAGRKRMRRKRRAWVKGVVTVQAPEDILGQRAKRHLKALGDNLFTLKALSDRWAGTANVEADERHVPLRQTRTEAEAKLTTAKRQLRESMAQLLNLYKEEALEDSDWEAEEATCAVCGGGEATDENDIAICDKCRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLDAYGVEEERARTFRRVQSLLEDADDSKAEGADHEESEEEDSDYVTEESEDEDEDEDSGSEDGSGEDEERGGGGSSDNGSRSAALSNDKVGQKLRAVRKEEAPRKCQNNRKQDKESYARARSSSTGSYHSSEDEDFDSDNSSYSSGDSFDSDFY 837
            MANNYIAGQIGKNRGRSRGSTPRGGILPSEQRKRSRQDSSEEGRSVTAATNAPEPCLKRSRFMGVTGAGAAINSVLKSADPSSYRSKRKTTTKINASNEEMNIDESDTGANTKCIDDADQKTDDRLKSGVVLNMRRKVAAAKKGLLEALARLVSGHRQKEGPLEKADTRRSAHFSSIQSLKRPKKPIQSPNEASTDSEAAQYLPISKDSESAALKASPRLSLNPRHRCSKAGILSKDQILASTLHAGAEVKERGPDERPVRSTKSLSTERKDRGDMGPSTSARQQERKRRNKRQQKEKHSLRLALKGRRHYNAEGVVDEEATRWALPSRKRALGRQVYDKQGYDRSEGQHDDAKDGKGEQSNAGKGKRSGRQAGASKRSTRSRAGDPRAAQDSRLKSAPSKGAEASTTRRRHKNDKHDYSHAHSMRMFEEGKKEGRGRKKEKRPPLEEESEADERPRPRRHSFPPLQTRSRTRVKRSSRLARKDRRVYGKDGFRVVTQESCAELPTEARAGRKRMRRKRRAWVKGVVTVQAPEDILGQRAKRHLKALGDNLFTLKALSDRWAGTANVEADERHVPLRQTRTEAEAKLTTAKRQLRESMAQLLNLYKEEALEDSDWEAEEATCAVCGGGEATDENDIAICDKCRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLDAYGVEEERARTFRRVQSLLEDADDSKAEGADHEESEEEDSDYVTEESEDEDEDEDSGSEDGSGEDEERGGGGSSDNGSRSAALSNDKVGQKLRAVRKEEAPRKCQNNRKQDKESYARARSSSTGSYHSSEDEDFDSDNSSYSSGDSFDSDFY
Sbjct:    1 MANNYIAGQIGKNRGRSRGSTPRGGILPSEQRKRSRQDSSEEGRSVTAATNAPEPCLKRSRFMGVTGAGAAINSVLKSADPSSYRSKRKTTTKINASNEEMNIDESDTGANTKCIDDADQKTDDRLKSGVVLNMRRKVAAAKKGLLEALARLVSGHRQKEGPLEKADTRRSAHFSSIQSLKRPKKPIQSPNEASTDSEAAQYLPISKDSESAALKASPRLSLNPRHRCSKAGILSKDQILASTLHAGAEVKERGPDERPVRSTKSLSTERKDRGDMGPSTSARQQERKRRNKRQQKEKHSLRLALKGRRHYNAEGVVDEEATRWALPSRKRALGRQVYDKQGYDRSEGQHDDAKDGKGEQSNAGKGKRSGRQAGASKRSTRSRAGDPRAAQDSRLKSAPSKGAEASTTRRRHKNDKHDYSHAHSMRMFEEGKKEGRGRKKEKRPPLEEESEADERPRPRRHSFPPLQTRSRTRVKRSSRLARKDRRVYGKDGFRVVTQESCAELPTEARAGRKRMRRKRRAWVKGVVTVQAPEDILGQRAKRHLKALGDNLFTLKALSDRWAGTANVEADERHVPLRQTRTEAEAKLTTAKRQLRESMAQLLNLYKEEALEDSDWEAEEATCAVCGGGEATDENDIAICDKCRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLDAYGVEEERARTFRRVQSLLEDADDSKAEGADHEESEEEDSDYVTEESEDEDEDEDSGSEDGSGEDEERGGGGSSDNGSRSAALSNDKVGQKLRAVRKEEAPRKCQNNRKQDKESYARARSSSTGSYHSSEDEDFDSDNSSYSSGDSFDSDFY 837          
BLAST of EWM26103.1 vs. NCBI_GenBank
Match: gi|303280896|ref|XP_003059740.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226458395|gb|EEH55692.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 77.7962 bits (190), Expect = 3.887e-11
Identity = 66/209 (31.58%), Postives = 106/209 (50.72%), Query Frame = 0
Query:  559 DRWAGTANVEADERHVPLRQTRTEAEAKLTTAKRQLRESMAQLLNLYKEEAL-------EDSDWEAEEATCAVCGGGEATDENDIAICDK-CRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLDAYGVEEERAR-TFRRVQSLLEDAD-DSKAEGADHEE----SEEEDSDYVT------EESEDEDEDEDSGSEDGS 747
            D W G +     E+  P  + R +A+ K+  AK ++RE + + ++L  + A        ED + +AE+  C  CG GE+TD+NDI +CD  C   +HQ C  PP+R ED+ E ++ W C+ C+   D       D + +E +  + TF  V    E+A+ D K EG   E     +++ D   V+      E   DE++DED G++  S
Sbjct:  115 DGWRGASR----EKLRPAEEIR-KAKIKIFNAKLRVRE-LFKHIDLAMDGARDLHAITDEDGELDAEDVFCCACGDGESTDDNDILLCDGFCDRGFHQRCCVPPVRTEDIPEGDEGWLCALCDARVDCFYTLNAD-FELELDAGKATFADV--FPEEAEADVKKEGPGQENETLAAKKGDGGVVSGGIMEQEWPSDEEDDEDFGADAAS 314          
BLAST of EWM26103.1 vs. NCBI_GenBank
Match: gi|612388503|ref|XP_007509772.1| (predicted protein [Bathycoccus prasinos] >gi|412985441|emb|CCO18887.1| predicted protein [Bathycoccus prasinos])

HSP 1 Score: 74.3294 bits (181), Expect = 3.455e-10
Identity = 55/182 (30.22%), Postives = 85/182 (46.70%), Query Frame = 0
Query:  591 KRQLRESMAQL------LNLYKEEALEDSDWEAEEATCAVCGGGEATDE-NDIAICD-KCRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLDA---YGVEE-ERARTFRRVQSLLEDADDSKAEGAD--HEESEEEDSDYVTEESEDEDEDEDSGSEDGSGEDEERGGGGS 758
            K ++RE   +L      L  +K +  ED + E E+  C  CG GE  +E ND+  CD  C + YH  C  PPL+PED+ + ++ W C  C+   D +    LD      +E       F++ Q +    D     G    H   E E+  + ++ESEDED  E +  +DG  + +E   G +
Sbjct:  117 KLKVRELFEKLNYDEKKLEKFKCKEDEDGEIECEDVVCCECGSGECNEEENDVVFCDGYCDLAYHMKCVKPPLKPEDIPKGDEGWLCPLCDCRVDVIYYLNLDYDQRLDIETCTHLDVFKKEQDMF---DKGIIPGTSRFHLHGENEEDVWPSDESEDEDFKEKNEKDDGKDDSDESLSGSA 295          
BLAST of EWM26103.1 vs. NCBI_GenBank
Match: gi|218197844|gb|EEC80271.1| (hypothetical protein OsI_22252 [Oryza sativa Indica Group])

HSP 1 Score: 72.7886 bits (177), Expect = 2.025e-9
Identity = 48/178 (26.97%), Postives = 83/178 (46.63%), Query Frame = 0
Query:  583 AEAKLTTAKRQLRESMAQLLNLYKEEALEDSDWEA------EEATCAVCGGGEATDENDIAICD-KCRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLD-----AYGVEEERARTFRRVQSLLEDADDSKAEGADHEESEEEDSDYVTEESEDEDEDEDSGSEDGSG 748
            A+ ++   K ++RE+   L +L  E  L++S +++      E+  CA CG  + T +NDI +CD  C   +HQ C  PPL  ED+ + ++ W C  C+   D +   VL+        + +   + F    S L  +    A     ++S + D D    +    DE++ SG + G G
Sbjct:  240 AKVEILRCKSRIREAFRNLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTLKNDIILCDGICDRGFHQYCLNPPLLAEDIPQGDEGWLCPACDCKIDCID--VLNELQGVKLSIHDSWEKVFPEAASFLNGSKQIDASDLPSDDSADNDYDPTLAQGHKVDEEKSSGEDGGEG 415          
BLAST of EWM26103.1 vs. NCBI_GenBank
Match: gi|1002279606|ref|XP_015644127.1| (PREDICTED: homeobox protein HOX1A [Oryza sativa Japonica Group] >gi|75244938|sp|Q8H991.1|HAZ1_ORYSJ RecName: Full=Homeobox protein HAZ1; AltName: Full=Homeobox protein HOX1A homolog >gi|22830607|dbj|BAC15621.1| PHD-finger family homeodomain protein [Oryza sativa Japonica Group] >gi|51535397|dbj|BAD37267.1| PHD-finger family homeodomain protein [Oryza sativa Japonica Group] >gi|113595254|dbj|BAF19128.1| Os06g0229300 [Oryza sativa Japonica Group] >gi|215768196|dbj|BAH00425.1| unnamed protein product [Oryza sativa Japonica Group] >gi|284431756|gb|ADB84619.1| PHD-finger family homeodomain protein [Oryza sativa Japonica Group] >gi|937921980|dbj|BAS96897.1| Os06g0229300 [Oryza sativa Japonica Group])

HSP 1 Score: 72.7886 bits (177), Expect = 2.111e-9
Identity = 48/178 (26.97%), Postives = 83/178 (46.63%), Query Frame = 0
Query:  583 AEAKLTTAKRQLRESMAQLLNLYKEEALEDSDWEA------EEATCAVCGGGEATDENDIAICD-KCRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLD-----AYGVEEERARTFRRVQSLLEDADDSKAEGADHEESEEEDSDYVTEESEDEDEDEDSGSEDGSG 748
            A+ ++   K ++RE+   L +L  E  L++S +++      E+  CA CG  + T +NDI +CD  C   +HQ C  PPL  ED+ + ++ W C  C+   D +   VL+        + +   + F    S L  +    A     ++S + D D    +    DE++ SG + G G
Sbjct:  202 AKVEILRCKSRIREAFRNLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTLKNDIILCDGICDRGFHQYCLNPPLLAEDIPQGDEGWLCPACDCKIDCID--VLNELQGVKLSIHDSWEKVFPEAASFLNGSKQIDASDLPSDDSADNDYDPTLAQGHKVDEEKSSGEDGGEG 377          
BLAST of EWM26103.1 vs. NCBI_GenBank
Match: gi|22830609|dbj|BAC15622.1| (PHD-finger family homeodomain protein, partial [Oryza sativa Japonica Group])

HSP 1 Score: 72.4034 bits (176), Expect = 2.427e-9
Identity = 48/178 (26.97%), Postives = 83/178 (46.63%), Query Frame = 0
Query:  583 AEAKLTTAKRQLRESMAQLLNLYKEEALEDSDWEA------EEATCAVCGGGEATDENDIAICD-KCRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLD-----AYGVEEERARTFRRVQSLLEDADDSKAEGADHEESEEEDSDYVTEESEDEDEDEDSGSEDGSG 748
            A+ ++   K ++RE+   L +L  E  L++S +++      E+  CA CG  + T +NDI +CD  C   +HQ C  PPL  ED+ + ++ W C  C+   D +   VL+        + +   + F    S L  +    A     ++S + D D    +    DE++ SG + G G
Sbjct:  202 AKVEILRCKSRIREAFRNLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTLKNDIILCDGICDRGFHQYCLNPPLLAEDIPQGDEGWLCPACDCKIDCID--VLNELQGVKLSIHDSWEKVFPEAASFLNGSKQIDASDLPSDDSADNDYDPTLAQGHKVDEEKSSGEDGGEG 377          
BLAST of EWM26103.1 vs. NCBI_GenBank
Match: gi|298706045|emb|CBJ29155.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.0182 bits (175), Expect = 2.809e-9
Identity = 40/133 (30.08%), Postives = 68/133 (51.13%), Query Frame = 0
Query:  584 EAKLTTAKRQLRESMAQLLNLYKEEALEDSDWEAEEATCAVCGGGEATDENDIAICDK--CRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLDAYGVEEERARTFRRVQSLLEDADDSKAEG 714
            +A+L    R+L E     L     +   + + E +E  C  CG G++ D +DI +CD   C   YHQ+C +PP++PE   EEE++W+C +CE + D       +  G   E+  +++ V  ++E   +  A G
Sbjct:   75 QAELREVTRRLTEMNPGGLRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKPEVFPEEEEDWFCWQCECLTDCFEMLENEFQG---EKFTSWKDVFPVVETGAEGGAAG 204          
BLAST of EWM26103.1 vs. NCBI_GenBank
Match: gi|125603298|gb|EAZ42623.1| (hypothetical protein OsJ_27188 [Oryza sativa Japonica Group])

HSP 1 Score: 70.8626 bits (172), Expect = 6.659e-9
Identity = 48/178 (26.97%), Postives = 83/178 (46.63%), Query Frame = 0
Query:  583 AEAKLTTAKRQLRESMAQLLNLYKEEALEDSDWEA------EEATCAVCGGGEATDENDIAICD-KCRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLD-----AYGVEEERARTFRRVQSLLEDADDSKAEGADHEESEEEDSDYVTEESEDEDEDEDSGSEDGSG 748
            A+ ++   K ++RE+   L +L  E  L++S +++      E+  CA CG  + T +NDI +CD  C   +HQ C  PPL  ED+ + ++ W C  C+   D +   VL+        + +   + F    S L  +    A     ++S + D D    +    DE++ SG + G G
Sbjct:  278 AKVEILRCKSRIREAFRNLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTLKNDIILCDGICDRGFHQYCLNPPLLAEDIPQGDEGWLCPACDCKIDCID--VLNELQGVKLSIHDSWEKVFPEAASFLNGSKQIDASDLPSDDSADNDYDPTLAQGHKVDEEKSSGEDGGEG 453          
BLAST of EWM26103.1 vs. NCBI_GenBank
Match: gi|475571299|gb|EMT16215.1| (Homeobox protein HOX1A [Aegilops tauschii])

HSP 1 Score: 71.2478 bits (173), Expect = 7.306e-9
Identity = 67/245 (27.35%), Postives = 105/245 (42.86%), Query Frame = 0
Query:  462 SFPPLQTRSRTRVKRSSRLARKDRRVYGKDGFRVVTQESCAELP-----TEARAGRKRMRRKRRAWVKGVVTVQAPEDILGQRAKRHLKALG----DNLFTLKALSDRW---AGTANVEADERHV---PLRQTRTE-----AEAKLTTAKRQLRESMAQLLNLYKEEALEDSDWEAE------EATCAVCGGGEATDENDIAICD-KCRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRL 679
            ++P   + S  RV RS  +A K       D  +  T+ +  + P     T  +   KR++R R        T   P+D L +  KR    L        F     S+ W   + + N+E    H     L + R E     A+ ++   K ++RE+   L +L     LE+S +++E      +  CA C   EAT  NDI +CD  C   +HQ+C  PPL  +D+ E E+ W C  C+   D +
Sbjct:   66 TYPLKSSESTVRVLRSRSVADKSP----SDAVQTPTERAAKKPPSDSVDTLVKPAAKRIKRDRP-------TKGGPDDELSKIRKRIRYILNRMNYHQSFLEAYASEGWKNQSVSCNIEILLTHTQTCSLEKIRPEKELERAKVEIVRCKLRIREAFQNLDHLLTVGKLEESLFDSEGKISSDDIVCATCSLQEATLNNDIILCDGACDRGFHQNCLNPPLLTKDIPEGEEGWLCPACDCKIDCI 299          
BLAST of EWM26103.1 vs. NCBI_GenBank
Match: gi|514747911|ref|XP_004961485.1| (PREDICTED: homeobox protein HOX1A-like [Setaria italica])

HSP 1 Score: 69.3218 bits (168), Expect = 2.313e-8
Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = 0
Query:  583 AEAKLTTAKRQLRESMAQLLNLYK----EEALEDSDWE--AEEATCAVCGGGEATDENDIAICD-KCRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRL 679
            A+A++   K ++RE    L +L      +E+L DS+ E   E+  CA CG  + T  NDI +CD  C   +HQ+C  PPLR ED+ E ++ W C  C+   D +
Sbjct:  172 AKAEILRCKLRIREVFQNLDSLLSKGKIDESLFDSEGEISCEDIFCANCGSKDVTLGNDIILCDGACDRGFHQNCLNPPLRTEDIPEGDEGWLCPACDCKIDCI 275          
The following BLAST results are available for this feature:
BLAST of EWM26103.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108097|gb|EWM26103.1|0.000e+0100.00phd-finger family homeodomain protein [Nannochloro... [more]
gi|303280896|ref|XP_003059740.1|3.887e-1131.58predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|612388503|ref|XP_007509772.1|3.455e-1030.22predicted protein [Bathycoccus prasinos] >gi|41298... [more]
gi|218197844|gb|EEC80271.1|2.025e-926.97hypothetical protein OsI_22252 [Oryza sativa Indic... [more]
gi|1002279606|ref|XP_015644127.1|2.111e-926.97PREDICTED: homeobox protein HOX1A [Oryza sativa Ja... [more]
gi|22830609|dbj|BAC15622.1|2.427e-926.97PHD-finger family homeodomain protein, partial [Or... [more]
gi|298706045|emb|CBJ29155.1|2.809e-930.08conserved unknown protein [Ectocarpus siliculosus][more]
gi|125603298|gb|EAZ42623.1|6.659e-926.97hypothetical protein OsJ_27188 [Oryza sativa Japon... [more]
gi|475571299|gb|EMT16215.1|7.306e-927.35Homeobox protein HOX1A [Aegilops tauschii][more]
gi|514747911|ref|XP_004961485.1|2.313e-836.54PREDICTED: homeobox protein HOX1A-like [Setaria it... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4561rna4561Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications