EWM26103.1, cds4549 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26103.1 vs. NCBI_GenBank
Match: gi|585108097|gb|EWM26103.1| (phd-finger family homeodomain protein [Nannochloropsis gaditana]) HSP 1 Score: 1700.64 bits (4403), Expect = 0.000e+0 Identity = 837/837 (100.00%), Postives = 837/837 (100.00%), Query Frame = 0
Query: 1 MANNYIAGQIGKNRGRSRGSTPRGGILPSEQRKRSRQDSSEEGRSVTAATNAPEPCLKRSRFMGVTGAGAAINSVLKSADPSSYRSKRKTTTKINASNEEMNIDESDTGANTKCIDDADQKTDDRLKSGVVLNMRRKVAAAKKGLLEALARLVSGHRQKEGPLEKADTRRSAHFSSIQSLKRPKKPIQSPNEASTDSEAAQYLPISKDSESAALKASPRLSLNPRHRCSKAGILSKDQILASTLHAGAEVKERGPDERPVRSTKSLSTERKDRGDMGPSTSARQQERKRRNKRQQKEKHSLRLALKGRRHYNAEGVVDEEATRWALPSRKRALGRQVYDKQGYDRSEGQHDDAKDGKGEQSNAGKGKRSGRQAGASKRSTRSRAGDPRAAQDSRLKSAPSKGAEASTTRRRHKNDKHDYSHAHSMRMFEEGKKEGRGRKKEKRPPLEEESEADERPRPRRHSFPPLQTRSRTRVKRSSRLARKDRRVYGKDGFRVVTQESCAELPTEARAGRKRMRRKRRAWVKGVVTVQAPEDILGQRAKRHLKALGDNLFTLKALSDRWAGTANVEADERHVPLRQTRTEAEAKLTTAKRQLRESMAQLLNLYKEEALEDSDWEAEEATCAVCGGGEATDENDIAICDKCRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLDAYGVEEERARTFRRVQSLLEDADDSKAEGADHEESEEEDSDYVTEESEDEDEDEDSGSEDGSGEDEERGGGGSSDNGSRSAALSNDKVGQKLRAVRKEEAPRKCQNNRKQDKESYARARSSSTGSYHSSEDEDFDSDNSSYSSGDSFDSDFY 837
MANNYIAGQIGKNRGRSRGSTPRGGILPSEQRKRSRQDSSEEGRSVTAATNAPEPCLKRSRFMGVTGAGAAINSVLKSADPSSYRSKRKTTTKINASNEEMNIDESDTGANTKCIDDADQKTDDRLKSGVVLNMRRKVAAAKKGLLEALARLVSGHRQKEGPLEKADTRRSAHFSSIQSLKRPKKPIQSPNEASTDSEAAQYLPISKDSESAALKASPRLSLNPRHRCSKAGILSKDQILASTLHAGAEVKERGPDERPVRSTKSLSTERKDRGDMGPSTSARQQERKRRNKRQQKEKHSLRLALKGRRHYNAEGVVDEEATRWALPSRKRALGRQVYDKQGYDRSEGQHDDAKDGKGEQSNAGKGKRSGRQAGASKRSTRSRAGDPRAAQDSRLKSAPSKGAEASTTRRRHKNDKHDYSHAHSMRMFEEGKKEGRGRKKEKRPPLEEESEADERPRPRRHSFPPLQTRSRTRVKRSSRLARKDRRVYGKDGFRVVTQESCAELPTEARAGRKRMRRKRRAWVKGVVTVQAPEDILGQRAKRHLKALGDNLFTLKALSDRWAGTANVEADERHVPLRQTRTEAEAKLTTAKRQLRESMAQLLNLYKEEALEDSDWEAEEATCAVCGGGEATDENDIAICDKCRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLDAYGVEEERARTFRRVQSLLEDADDSKAEGADHEESEEEDSDYVTEESEDEDEDEDSGSEDGSGEDEERGGGGSSDNGSRSAALSNDKVGQKLRAVRKEEAPRKCQNNRKQDKESYARARSSSTGSYHSSEDEDFDSDNSSYSSGDSFDSDFY
Sbjct: 1 MANNYIAGQIGKNRGRSRGSTPRGGILPSEQRKRSRQDSSEEGRSVTAATNAPEPCLKRSRFMGVTGAGAAINSVLKSADPSSYRSKRKTTTKINASNEEMNIDESDTGANTKCIDDADQKTDDRLKSGVVLNMRRKVAAAKKGLLEALARLVSGHRQKEGPLEKADTRRSAHFSSIQSLKRPKKPIQSPNEASTDSEAAQYLPISKDSESAALKASPRLSLNPRHRCSKAGILSKDQILASTLHAGAEVKERGPDERPVRSTKSLSTERKDRGDMGPSTSARQQERKRRNKRQQKEKHSLRLALKGRRHYNAEGVVDEEATRWALPSRKRALGRQVYDKQGYDRSEGQHDDAKDGKGEQSNAGKGKRSGRQAGASKRSTRSRAGDPRAAQDSRLKSAPSKGAEASTTRRRHKNDKHDYSHAHSMRMFEEGKKEGRGRKKEKRPPLEEESEADERPRPRRHSFPPLQTRSRTRVKRSSRLARKDRRVYGKDGFRVVTQESCAELPTEARAGRKRMRRKRRAWVKGVVTVQAPEDILGQRAKRHLKALGDNLFTLKALSDRWAGTANVEADERHVPLRQTRTEAEAKLTTAKRQLRESMAQLLNLYKEEALEDSDWEAEEATCAVCGGGEATDENDIAICDKCRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLDAYGVEEERARTFRRVQSLLEDADDSKAEGADHEESEEEDSDYVTEESEDEDEDEDSGSEDGSGEDEERGGGGSSDNGSRSAALSNDKVGQKLRAVRKEEAPRKCQNNRKQDKESYARARSSSTGSYHSSEDEDFDSDNSSYSSGDSFDSDFY 837
BLAST of EWM26103.1 vs. NCBI_GenBank
Match: gi|303280896|ref|XP_003059740.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226458395|gb|EEH55692.1| predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 77.7962 bits (190), Expect = 3.887e-11 Identity = 66/209 (31.58%), Postives = 106/209 (50.72%), Query Frame = 0
Query: 559 DRWAGTANVEADERHVPLRQTRTEAEAKLTTAKRQLRESMAQLLNLYKEEAL-------EDSDWEAEEATCAVCGGGEATDENDIAICDK-CRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLDAYGVEEERAR-TFRRVQSLLEDAD-DSKAEGADHEE----SEEEDSDYVT------EESEDEDEDEDSGSEDGS 747
D W G + E+ P + R +A+ K+ AK ++RE + + ++L + A ED + +AE+ C CG GE+TD+NDI +CD C +HQ C PP+R ED+ E ++ W C+ C+ D D + +E + + TF V E+A+ D K EG E +++ D V+ E DE++DED G++ S
Sbjct: 115 DGWRGASR----EKLRPAEEIR-KAKIKIFNAKLRVRE-LFKHIDLAMDGARDLHAITDEDGELDAEDVFCCACGDGESTDDNDILLCDGFCDRGFHQRCCVPPVRTEDIPEGDEGWLCALCDARVDCFYTLNAD-FELELDAGKATFADV--FPEEAEADVKKEGPGQENETLAAKKGDGGVVSGGIMEQEWPSDEEDDEDFGADAAS 314
BLAST of EWM26103.1 vs. NCBI_GenBank
Match: gi|612388503|ref|XP_007509772.1| (predicted protein [Bathycoccus prasinos] >gi|412985441|emb|CCO18887.1| predicted protein [Bathycoccus prasinos]) HSP 1 Score: 74.3294 bits (181), Expect = 3.455e-10 Identity = 55/182 (30.22%), Postives = 85/182 (46.70%), Query Frame = 0
Query: 591 KRQLRESMAQL------LNLYKEEALEDSDWEAEEATCAVCGGGEATDE-NDIAICD-KCRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLDA---YGVEE-ERARTFRRVQSLLEDADDSKAEGAD--HEESEEEDSDYVTEESEDEDEDEDSGSEDGSGEDEERGGGGS 758
K ++RE +L L +K + ED + E E+ C CG GE +E ND+ CD C + YH C PPL+PED+ + ++ W C C+ D + LD +E F++ Q + D G H E E+ + ++ESEDED E + +DG + +E G +
Sbjct: 117 KLKVRELFEKLNYDEKKLEKFKCKEDEDGEIECEDVVCCECGSGECNEEENDVVFCDGYCDLAYHMKCVKPPLKPEDIPKGDEGWLCPLCDCRVDVIYYLNLDYDQRLDIETCTHLDVFKKEQDMF---DKGIIPGTSRFHLHGENEEDVWPSDESEDEDFKEKNEKDDGKDDSDESLSGSA 295
BLAST of EWM26103.1 vs. NCBI_GenBank
Match: gi|218197844|gb|EEC80271.1| (hypothetical protein OsI_22252 [Oryza sativa Indica Group]) HSP 1 Score: 72.7886 bits (177), Expect = 2.025e-9 Identity = 48/178 (26.97%), Postives = 83/178 (46.63%), Query Frame = 0
Query: 583 AEAKLTTAKRQLRESMAQLLNLYKEEALEDSDWEA------EEATCAVCGGGEATDENDIAICD-KCRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLD-----AYGVEEERARTFRRVQSLLEDADDSKAEGADHEESEEEDSDYVTEESEDEDEDEDSGSEDGSG 748
A+ ++ K ++RE+ L +L E L++S +++ E+ CA CG + T +NDI +CD C +HQ C PPL ED+ + ++ W C C+ D + VL+ + + + F S L + A ++S + D D + DE++ SG + G G
Sbjct: 240 AKVEILRCKSRIREAFRNLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTLKNDIILCDGICDRGFHQYCLNPPLLAEDIPQGDEGWLCPACDCKIDCID--VLNELQGVKLSIHDSWEKVFPEAASFLNGSKQIDASDLPSDDSADNDYDPTLAQGHKVDEEKSSGEDGGEG 415
BLAST of EWM26103.1 vs. NCBI_GenBank
Match: gi|1002279606|ref|XP_015644127.1| (PREDICTED: homeobox protein HOX1A [Oryza sativa Japonica Group] >gi|75244938|sp|Q8H991.1|HAZ1_ORYSJ RecName: Full=Homeobox protein HAZ1; AltName: Full=Homeobox protein HOX1A homolog >gi|22830607|dbj|BAC15621.1| PHD-finger family homeodomain protein [Oryza sativa Japonica Group] >gi|51535397|dbj|BAD37267.1| PHD-finger family homeodomain protein [Oryza sativa Japonica Group] >gi|113595254|dbj|BAF19128.1| Os06g0229300 [Oryza sativa Japonica Group] >gi|215768196|dbj|BAH00425.1| unnamed protein product [Oryza sativa Japonica Group] >gi|284431756|gb|ADB84619.1| PHD-finger family homeodomain protein [Oryza sativa Japonica Group] >gi|937921980|dbj|BAS96897.1| Os06g0229300 [Oryza sativa Japonica Group]) HSP 1 Score: 72.7886 bits (177), Expect = 2.111e-9 Identity = 48/178 (26.97%), Postives = 83/178 (46.63%), Query Frame = 0
Query: 583 AEAKLTTAKRQLRESMAQLLNLYKEEALEDSDWEA------EEATCAVCGGGEATDENDIAICD-KCRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLD-----AYGVEEERARTFRRVQSLLEDADDSKAEGADHEESEEEDSDYVTEESEDEDEDEDSGSEDGSG 748
A+ ++ K ++RE+ L +L E L++S +++ E+ CA CG + T +NDI +CD C +HQ C PPL ED+ + ++ W C C+ D + VL+ + + + F S L + A ++S + D D + DE++ SG + G G
Sbjct: 202 AKVEILRCKSRIREAFRNLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTLKNDIILCDGICDRGFHQYCLNPPLLAEDIPQGDEGWLCPACDCKIDCID--VLNELQGVKLSIHDSWEKVFPEAASFLNGSKQIDASDLPSDDSADNDYDPTLAQGHKVDEEKSSGEDGGEG 377
BLAST of EWM26103.1 vs. NCBI_GenBank
Match: gi|22830609|dbj|BAC15622.1| (PHD-finger family homeodomain protein, partial [Oryza sativa Japonica Group]) HSP 1 Score: 72.4034 bits (176), Expect = 2.427e-9 Identity = 48/178 (26.97%), Postives = 83/178 (46.63%), Query Frame = 0
Query: 583 AEAKLTTAKRQLRESMAQLLNLYKEEALEDSDWEA------EEATCAVCGGGEATDENDIAICD-KCRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLD-----AYGVEEERARTFRRVQSLLEDADDSKAEGADHEESEEEDSDYVTEESEDEDEDEDSGSEDGSG 748
A+ ++ K ++RE+ L +L E L++S +++ E+ CA CG + T +NDI +CD C +HQ C PPL ED+ + ++ W C C+ D + VL+ + + + F S L + A ++S + D D + DE++ SG + G G
Sbjct: 202 AKVEILRCKSRIREAFRNLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTLKNDIILCDGICDRGFHQYCLNPPLLAEDIPQGDEGWLCPACDCKIDCID--VLNELQGVKLSIHDSWEKVFPEAASFLNGSKQIDASDLPSDDSADNDYDPTLAQGHKVDEEKSSGEDGGEG 377
BLAST of EWM26103.1 vs. NCBI_GenBank
Match: gi|298706045|emb|CBJ29155.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 72.0182 bits (175), Expect = 2.809e-9 Identity = 40/133 (30.08%), Postives = 68/133 (51.13%), Query Frame = 0
Query: 584 EAKLTTAKRQLRESMAQLLNLYKEEALEDSDWEAEEATCAVCGGGEATDENDIAICDK--CRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLDAYGVEEERARTFRRVQSLLEDADDSKAEG 714
+A+L R+L E L + + + E +E C CG G++ D +DI +CD C YHQ+C +PP++PE EEE++W+C +CE + D + G E+ +++ V ++E + A G
Sbjct: 75 QAELREVTRRLTEMNPGGLRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKPEVFPEEEEDWFCWQCECLTDCFEMLENEFQG---EKFTSWKDVFPVVETGAEGGAAG 204
BLAST of EWM26103.1 vs. NCBI_GenBank
Match: gi|125603298|gb|EAZ42623.1| (hypothetical protein OsJ_27188 [Oryza sativa Japonica Group]) HSP 1 Score: 70.8626 bits (172), Expect = 6.659e-9 Identity = 48/178 (26.97%), Postives = 83/178 (46.63%), Query Frame = 0
Query: 583 AEAKLTTAKRQLRESMAQLLNLYKEEALEDSDWEA------EEATCAVCGGGEATDENDIAICD-KCRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRLSNAVLD-----AYGVEEERARTFRRVQSLLEDADDSKAEGADHEESEEEDSDYVTEESEDEDEDEDSGSEDGSG 748
A+ ++ K ++RE+ L +L E L++S +++ E+ CA CG + T +NDI +CD C +HQ C PPL ED+ + ++ W C C+ D + VL+ + + + F S L + A ++S + D D + DE++ SG + G G
Sbjct: 278 AKVEILRCKSRIREAFRNLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTLKNDIILCDGICDRGFHQYCLNPPLLAEDIPQGDEGWLCPACDCKIDCID--VLNELQGVKLSIHDSWEKVFPEAASFLNGSKQIDASDLPSDDSADNDYDPTLAQGHKVDEEKSSGEDGGEG 453
BLAST of EWM26103.1 vs. NCBI_GenBank
Match: gi|475571299|gb|EMT16215.1| (Homeobox protein HOX1A [Aegilops tauschii]) HSP 1 Score: 71.2478 bits (173), Expect = 7.306e-9 Identity = 67/245 (27.35%), Postives = 105/245 (42.86%), Query Frame = 0
Query: 462 SFPPLQTRSRTRVKRSSRLARKDRRVYGKDGFRVVTQESCAELP-----TEARAGRKRMRRKRRAWVKGVVTVQAPEDILGQRAKRHLKALG----DNLFTLKALSDRW---AGTANVEADERHV---PLRQTRTE-----AEAKLTTAKRQLRESMAQLLNLYKEEALEDSDWEAE------EATCAVCGGGEATDENDIAICD-KCRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRL 679
++P + S RV RS +A K D + T+ + + P T + KR++R R T P+D L + KR L F S+ W + + N+E H L + R E A+ ++ K ++RE+ L +L LE+S +++E + CA C EAT NDI +CD C +HQ+C PPL +D+ E E+ W C C+ D +
Sbjct: 66 TYPLKSSESTVRVLRSRSVADKSP----SDAVQTPTERAAKKPPSDSVDTLVKPAAKRIKRDRP-------TKGGPDDELSKIRKRIRYILNRMNYHQSFLEAYASEGWKNQSVSCNIEILLTHTQTCSLEKIRPEKELERAKVEIVRCKLRIREAFQNLDHLLTVGKLEESLFDSEGKISSDDIVCATCSLQEATLNNDIILCDGACDRGFHQNCLNPPLLTKDIPEGEEGWLCPACDCKIDCI 299
BLAST of EWM26103.1 vs. NCBI_GenBank
Match: gi|514747911|ref|XP_004961485.1| (PREDICTED: homeobox protein HOX1A-like [Setaria italica]) HSP 1 Score: 69.3218 bits (168), Expect = 2.313e-8 Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = 0
Query: 583 AEAKLTTAKRQLRESMAQLLNLYK----EEALEDSDWE--AEEATCAVCGGGEATDENDIAICD-KCRVPYHQDCHAPPLRPEDLGEEEDEWWCSRCELVYDRL 679
A+A++ K ++RE L +L +E+L DS+ E E+ CA CG + T NDI +CD C +HQ+C PPLR ED+ E ++ W C C+ D +
Sbjct: 172 AKAEILRCKLRIREVFQNLDSLLSKGKIDESLFDSEGEISCEDIFCANCGSKDVTLGNDIILCDGACDRGFHQNCLNPPLRTEDIPEGDEGWLCPACDCKIDCI 275 The following BLAST results are available for this feature:
BLAST of EWM26103.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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