rna456, rna456 (mRNA) Nannochloropsis gaditana

Overview
Namerna456
Unique Namerna456
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1413
Alignment locationCM002455.1:1137690..1138832 -

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Properties
Property NameValue
ProductTRAM, LAG1 and CLN8 lipid-sensing domain containing protein
Orig transcript idgnl|cribi|Naga_100003g23.1859.mrna
Orig protein idgnl|cribi|Naga_100003g23.1859
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1137690..1138832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g23gene440Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna456rna456-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30342.1cds456Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna456 ID=rna456|Name=rna456|organism=Nannochloropsis gaditana|type=mRNA|length=1413bp
ATGGGGTCTTGCGGTCAAATTGGATTCCTGTTCTCTAATACCAAGCTCTT
CGCCTCCTTCTCACTCTGTCGGCCCTTTTCCAGCAGACGGCGTCCGCGGC
CTTGCACGTCAGATCCTCATGTAGATAAAAGTGATAGCATTGAAGTTCAT
ACAAATGAGAACAAAATCGCGTCTCCCTTTAGTAGTGAATACCACTCCCC
GGTTATGTGGCGGGAGGTATTGGAGCACCTAGTTACCGACACTCGAGGTC
TGTACCTCGACTGCACTTTGGGGGGTGGAGGGCATTCTGAGGCCATTCTC
ACTCGCCTTGAGGAGCCCGGAGGGAAAGTCATCGCCCTCGATCAAGATCC
TGACGCCCTAGACTTCGCGGGCAAGCGCTTGGAGCAGGAAGTGGGCCGAG
GGAGATTCAAGGCACTCAGGGCAAATTTCCGGGCGGCGACTGATGTGTTG
CTCTCCGAGGGTCTCATCACGCCGGAAGCTGCCGCGGGGACGGAGCCTGG
TCCTTTTTCAGGCATTCTACTCGATCTCGGGGTCTCGTCGCACCAACTTG
ACGTGGCTGCGCGGGGTTTCAGTTTCCGCGGAGACGGACCGCTGGACATG
CGCATGCAGGGTCCCATGAAGCCGCCAACCTCAACGTCTTCCTCCTCGCC
GCCCTCCGCGTTATCCGCGGGTGACATCGTCAACACCTGGGAGGTAGGGG
CCCTGAGTAAAGTGCTCAGAGCCTACGGAGAGGAGCCTCGTGCCTACAAA
ATAGCTAGGGCCATCGAGTCTTCCCGACCCCTGAAGTCCACCACAGAGCT
CAGAGAGGTGGTAGCCAAATGCGCACCGTATGCAGAAAGGCCAAAGGTCT
TGGCCCGGGTTTTTCAAGGATTACGCATTGCTGTGAACGGCGAGGTAGAG
GCCCTGGAGGCGATCCTCACGCAATCCACACGACTGGTCCGAAGAGGAGG
GAGACTCGTAGTCTTGTCATACCACTCTTTGGAAGACCGTCCTGTAAAAC
GATTTTTGCGGGCAGGAAACAAGGAAGGCAGGGTTGAGCGGGACTTTTAT
GGCCACGAAGTGAGCACATGGCGGGCCGTAGCGCGGACGTCTATCCGCCC
AAAGGAAGATGAAGTGAGTATGAACCCTAGGGCCAGGAGTGTGAGCATGC
GGGTTGGCGAAAGGACAGAGTTGGGCGAGGCACAAGTTCGGGCGAGGGTG
GACGCGCTACCGACTGTCACCTACACAAAACCAAGGCAGATACCACACAT
GGAAAAGTCTGAGAGCACGATAGTCTCGAACAACGGCGACGAGATGAAGG
CAAGGCAGGAAGCCGGAGACCGAGGTGACGAACGGCGTGGGAGAGGGAAG
AAAGGAAATGCCGATAGCGAGGATTCGGAAAACGAGGACAATTCCACTCA
AAAAACAGAGTAA
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protein sequence of rna456

>rna456-protein ID=rna456-protein|Name=rna456|organism=Nannochloropsis gaditana|type=polypeptide|length=323bp
MFLTSTKPLDVLGKVIVSFLLVSAVFYGFFLLDIVGLKNKRLRASWALKA
LSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSDVV
AVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPA
CHYFLLCCLSMEFSTPFVQYRWFILQSEDLGKNHPLYIFNGIIMTIAFAL
CRLCPMLPLNIWAILVSAPHSAESGLPWTVRAASSVLVLPNLLNAYWGYI
MIKGLTKVLFSLGKPCKEASKAGRPDNVLKMEKSTEASSPWLPSPAAKRP
SQARATALATPSTQGCEQGLKAA
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mRNA from alignment at CM002455.1:1137690..1138832-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna456 ID=rna456|Name=rna456|organism=Nannochloropsis gaditana|type=mRNA|length=1143bp|location=Sequence derived from alignment at CM002455.1:1137690..1138832- (Nannochloropsis gaditana)
ATGTTTTTGACTTCAACAAAGCCGCTAGATGTTCTAGGGAAAGTGATAGT
GAGTTTCTTATTGGTTTCTGCTGTCTTCTATGGCTTTTTCCTCTTGGACA
TCGTCGGCCTCAAAAACAAAAGGCTTCGCGCCTCTTGGGCGCTAAAAGCT
CTTTCAGTTGTGCATGCGACTGTAGTCGCGACGATGAGCATCTGGGCTTT
GTTCTACGAAAAAAACATGCATGAAATAACTACTGGCATCCTCCAACGCG
ACGCGGCATCGGTGCGATGGCCTCTCGTTCATGCCCGTTCCGACGTGGTC
GCCGTTGCAGCTCCTCTCACATTGGCATATTTCCTCTTTGATTTGGCGCT
TATTCCCGTGTGGGAAGGTCGATTCGCGGTAAGTGAGGGTGCGAAAGTTA
TGGCTTGGTCGGATATACAGAATTTGGGGCCAATGCCGATGAATGTTCTG
CAAAACGTGCGGATCAGCAAGAAAAAAATAATGTCATGCTCCAGCAAACA
CTATACATCCTCTTTTTGCTTTGTGTCTATCATTTATTGCCTAAAACAGC
AACAGATACTCATCTTTTTACACCACGGTATCTCCATCGTCACGTGGCCG
TTCGGGATCTGCCATCCCGCCTGCCATTACTTCCTTCTTTGCTGTCTGAG
CATGGAGTTTTCCACCCCCTTCGTCCAGTACCGATGGTTTATACTGCAGA
GTGAAGATCTGGGGAAAAACCATCCCCTGTACATCTTTAATGGTATCATT
ATGACCATTGCCTTCGCCCTTTGCCGGCTATGTCCCATGCTGCCACTCAA
CATTTGGGCCATCCTCGTTTCGGCTCCTCATTCCGCTGAGTCGGGCCTGC
CCTGGACGGTGCGAGCAGCGAGCAGCGTCCTGGTGTTGCCCAACCTGCTG
AACGCCTACTGGGGATACATCATGATCAAAGGGTTGACGAAAGTGCTTTT
TTCTCTGGGAAAGCCATGCAAAGAAGCGAGCAAGGCTGGTCGTCCGGACA
ACGTCCTTAAAATGGAGAAAAGTACTGAAGCCTCGTCTCCTTGGCTCCCG
TCGCCCGCAGCCAAGAGGCCGTCACAAGCACGGGCAACGGCACTAGCGAC
GCCCTCAACTCAAGGCTGTGAGCAGGGCCTGAAGGCGGCCTGA
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Coding sequence (CDS) from alignment at CM002455.1:1137690..1138832-

>rna456 ID=rna456|Name=rna456|organism=Nannochloropsis gaditana|type=CDS|length=1944bp|location=Sequence derived from alignment at CM002455.1:1137690..1138832- (Nannochloropsis gaditana)
CAACAGATACTCATCTTTTTACACCACGGTATCTCCATCGTCACGTGGCC
GTTCGGGATCTGCCATCCCGCCTGCCATTACTTCCTTCTTTGCTGTCTGA
GCATGGAGTTTTCCACCCCCTTCGTCCAGTACCGATGGTTTATACTGCAG
AGTGAAGATCTGGGGAAAAACCATCCCCTGTACATCTTTAATGGTATCAT
TATGACCATTGCCTTCGCCCTTTGCCGGCTATGTCCCATGCTGCCACTCA
ACATTTGGGCCATCCTCGTTTCGGCTCCTCATTCCGCTGAGTCGGGCCTG
CCCTGGACGGTGCGAGCAGCGAGCAGCGTCCTGGTGTTGCCCAACCTGCT
GAACGCCTACTGGGGATACATCATGATCAAAGGGTTGACGAAAGTGCTTT
TTTCTCTGGGAAAGCCATGCAAAGAAGCGAGCAAGGCTGGTCGTCCGGAC
AACGTCCTTAAAATGGAGAAAAGTACTGAAGCCTCGTCTCCTTGGCTCCC
GTCGCCCGCAGCCAAGAGGCCGTCACAAGCACGGGCAACGGCACTAGCGA
CGCCCTCAACTCAAGGCTGTGAGCAGGGCCTGAAGGCGGCCTGAATGTTT
TTGACTTCAACAAAGCCGCTAGATGTTCTAGGGAAAGTGATAGTGAGTTT
CTTATTGGTTTCTGCTGTCTTCTATGGCTTTTTCCTCTTGGACATCGTCG
GCCTCAAAAACAAAAGGCTTCGCGCCTCTTGGGCGCTAAAAGCTCTTTCA
GTTGTGCATGCGACTGTAGTCGCGACGATGAGCATCTGGGCTTTGTTCTA
CGAAAAAAACATGCATGAAATAACTACTGGCATCCTCCAACGCGACGCGG
CATCGGTGCGATGGCCTCTCGTTCATGCCCGTTCCGACGTGGTCGCCGTT
GCAGCTCCTCTCACATTGGCATATTTCCTCTTTGATTTGGCGCTTATTCC
CGTGTGGGAAGGTCGATTCGCGCAACAGATACTCATCTTTTTACACCACG
GTATCTCCATCGTCACGTGGCCGTTCGGGATCTGCCATCCCGCCTGCCAT
TACTTCCTTCTTTGCTGTCTGAGCATGGAGTTTTCCACCCCCTTCGTCCA
GTACCGATGGTTTATACTGCAGAGTGAAGATCTGGGGAAAAACCATCCCC
TGTACATCTTTAATGGTATCATTATGACCATTGCCTTCGCCCTTTGCCGG
CTATGTCCCATGCTGCCACTCAACATTTGGGCCATCCTCGTTTCGGCTCC
TCATTCCGCTGAGTCGGGCCTGCCCTGGACGGTGCGAGCAGCGAGCAGCG
TCCTGGTGTTGCCCAACCTGCTGAACGCCTACTGGGGATACATCATGATC
AAAGGGTTGACGAAAGTGCTTTTTTCTCTGGGAAAGCCATGCAAAGAAGC
GAGCAAGGCTGGTCGTCCGGACAACGTCCTTAAAATGGAGAAAAGTACTG
AAGCCTCGTCTCCTTGGCTCCCGTCGCCCGCAGCCAAGAGGCCGTCACAA
GCACGGGCAACGGCACTAGCGACGCCCTCAACTCAAGGCTGTGAGCAGGG
CCTGAAGGCGGCCTGAATGTTTTTGACTTCAACAAAGCCGCTAGATGTTC
TAGGGAAAGTGATAGTGAGTTTCTTATTGGTTTCTGCTGTCTTCTATGGC
TTTTTCCTCTTGGACATCGTCGGCCTCAAAAACAAAAGGCTTCGCGCCTC
TTGGGCGCTAAAAGCTCTTTCAGTTGTGCATGCGACTGTAGTCGCGACGA
TGAGCATCTGGGCTTTGTTCTACGAAAAAAACATGCATGAAATAACTACT
GGCATCCTCCAACGCGACGCGGCATCGGTGCGATGGCCTCTCGTTCATGC
CCGTTCCGACGTGGTCGCCGTTGCAGCTCCTCTCACATTGGCATATTTCC
TCTTTGATTTGGCGCTTATTCCCGTGTGGGAAGGTCGATTCGCG
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Synonyms
Publications