EWM30342.1, cds456 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30342.1 vs. NCBI_GenBank
Match: gi|585113001|gb|EWM30342.1| (TRAM, LAG1 and CLN8 lipid-sensing domain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 660.218 bits (1702), Expect = 0.000e+0 Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 0
Query: 1 MFLTSTKPLDVLGKVIVSFLLVSAVFYGFFLLDIVGLKNKRLRASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSDVVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLGKNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAILVSAPHSAESGLPWTVRAASSVLVLPNLLNAYWGYIMIKGLTKVLFSLGKPCKEASKAGRPDNVLKMEKSTEASSPWLPSPAAKRPSQARATALATPSTQGCEQGLKAA 323
MFLTSTKPLDVLGKVIVSFLLVSAVFYGFFLLDIVGLKNKRLRASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSDVVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLGKNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAILVSAPHSAESGLPWTVRAASSVLVLPNLLNAYWGYIMIKGLTKVLFSLGKPCKEASKAGRPDNVLKMEKSTEASSPWLPSPAAKRPSQARATALATPSTQGCEQGLKAA
Sbjct: 1 MFLTSTKPLDVLGKVIVSFLLVSAVFYGFFLLDIVGLKNKRLRASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSDVVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLGKNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAILVSAPHSAESGLPWTVRAASSVLVLPNLLNAYWGYIMIKGLTKVLFSLGKPCKEASKAGRPDNVLKMEKSTEASSPWLPSPAAKRPSQARATALATPSTQGCEQGLKAA 323
BLAST of EWM30342.1 vs. NCBI_GenBank
Match: gi|961072662|ref|XP_014783289.1| (PREDICTED: transmembrane protein 56-B-like [Octopus bimaculoides] >gi|918336310|gb|KOF98246.1| hypothetical protein OCBIM_22026596mg [Octopus bimaculoides]) HSP 1 Score: 77.411 bits (189), Expect = 8.353e-13 Identity = 68/223 (30.49%), Postives = 103/223 (46.19%), Query Frame = 0
Query: 43 RASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSDVVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLGKNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAIL-VSAPHSAESGLPWTVRAASSVLVLPNLLNAYWGYIMIKGLTKVLFSLGK 264
+ W + +S +HA VV++M + L Y+ L +D + W + VV + + + Y + DL ++ V + ++ F HHG SI + + + YF L EFSTPFV RWF L K L++ NGI+MTI F L R+ M PL + + V HS + + +VL + +N YW Y M G+ KVL S K
Sbjct: 51 KIDWNTRVISSIHAAVVSSMCAYTLLYDAG--------LSKDP--IWWD-----APVVRTSCAIVVGYMVADLIIMTV-HYKTIGEVFYFFHHGASIYAYVYVMTIGVLPYFANYRLIAEFSTPFVNQRWF-LDVLGYEKKSSLFVVNGIVMTIVFFLVRVACM-PLYWYKVYSVCGTHSFITLGHMRYVLVFTCVVLDS-INLYWFYRMCAGVRKVLTSHDK 254
BLAST of EWM30342.1 vs. NCBI_GenBank
Match: gi|1013948120|gb|KYR01785.1| (hypothetical protein DLAC_01797 [Dictyostelium lacteum]) HSP 1 Score: 72.0182 bits (175), Expect = 6.577e-11 Identity = 47/158 (29.75%), Postives = 79/158 (50.00%), Query Frame = 0
Query: 109 AYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLGKNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAILVSAPHSAESGLPWTVRAASSV-LVLPNLLNAYWGYIMIKGLTKVLFSLGKP 265
YFL+D L+ + F L HH + + + GI CH+ L+ + E +TPFV +RW + Q+ K+ LY+ NG+ + + F + R+ +PL+I + + LP V + VL NLLN +W +++ +GL ++ FS K
Sbjct: 113 GYFLYDTLLVCYYRNLFDYGTL--FHHVLGLYLYNIGIVCGNCHFVLISYIFTEITTPFVNFRWILYQTNR--KDGLLYMINGLCLALGFLIVRVI-YIPLSI-GYQLYDKYPLSFALPEFVWYGTYFGFVLINLLNMFWAFLIWRGLIRLAFSSNKQ 264
BLAST of EWM30342.1 vs. NCBI_GenBank
Match: gi|694398496|ref|XP_009374425.1| (PREDICTED: transmembrane protein 56-like [Pyrus x bretschneideri] >gi|694398498|ref|XP_009374426.1| PREDICTED: transmembrane protein 56-like [Pyrus x bretschneideri] >gi|694398500|ref|XP_009374427.1| PREDICTED: transmembrane protein 56-like [Pyrus x bretschneideri]) HSP 1 Score: 69.3218 bits (168), Expect = 6.634e-10 Identity = 67/257 (26.07%), Postives = 110/257 (42.80%), Query Frame = 0
Query: 18 SFLLVSAVFYGFFLLDIV-------------GLKN--KRLRASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSDVVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLGKNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAILVSAPHSAESGLPWTVRAASSVLVLP--NLLNAYWGYIMIKGLTK 257
F L+++VF+G L +IV G K + W + S VHA VA S + + HE D P+V RS + +++ YFL DL ++ W + LHHG+S+ + + ++L L E +TPFV RW++ + KN LY+FNG+ M + + R+ L I+ + H + + + S +LV P ++N +W + + KGL K
Sbjct: 22 EFHLLASVFFGIILCNIVYRLTQLISLLSVKGYDKLTKAEKVEWNNRGFSTVHAIAVAFASFYLVVLSDTFHED-----HHDE-----PIVSRRSTISDTTLGISIGYFLSDLGMV-FWHFPALGGLEYVLHHGLSMYSILLSLISGKGQIYILMVLFSESTTPFVNMRWYLYVAGK--KNSNLYVFNGVAMFLGWLAARVL----LFIYFFVHMFIHFDQVKTIFPLGFYSLLLVPPMLTMMNLFWFWKITKGLIK 261
BLAST of EWM30342.1 vs. NCBI_GenBank
Match: gi|676476974|ref|XP_009060969.1| (hypothetical protein LOTGIDRAFT_219318 [Lottia gigantea] >gi|556099597|gb|ESO88249.1| hypothetical protein LOTGIDRAFT_219318 [Lottia gigantea]) HSP 1 Score: 68.9366 bits (167), Expect = 7.891e-10 Identity = 52/228 (22.81%), Postives = 100/228 (43.86%), Query Frame = 0
Query: 43 RASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSDVVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLGKNHPLYIFNGIIMTIAFALCRLC--PMLPLNIWAILVSAPHSAESGLPWTVRAASSVLVLPNLLNAYWGYIMIKGLTKVLFSLGKPCKE 268
+ W + S +HAT V+ M +++L Y++++ + + A S +V + + + Y D+ ++ + + + F HHG S+ + + + + YF L EFSTPFV RWF L K +++ NG+ MTI F R+ P +++++ + + + +L + +N +W Y M +G+ +VL K E
Sbjct: 52 QIDWNTRFNSTIHATFVSCMCVYSLIYDEDISK---------------EPIWADSPMVRTSCAIVVGYMTCDILIMTIHYKKIGEA-FYFFHHGASMYAYFYVMTYGVLPYFANFRLMAEFSTPFVNQRWF-LDKLKYSKTSKIFMLNGLAMTITFFFVRIAVMPTYWKRVYSVIGTESFKRLGHISLVLVITCFIL---DSINLFWFYKMCQGVKRVLKIYAKKNME 259
BLAST of EWM30342.1 vs. NCBI_GenBank
Match: gi|704250899|ref|XP_010147879.1| (PREDICTED: transmembrane protein 56 [Eurypyga helias]) HSP 1 Score: 68.1662 bits (165), Expect = 1.343e-9 Identity = 64/248 (25.81%), Postives = 110/248 (44.35%), Query Frame = 0
Query: 36 GLKN--KRLRASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSDVVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLG--KNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAILVSAPHSAESGLPWTVRAA---SSVLVLPNLLNAYWGYIMIKGLTKVLFSLGKPCKEASKAGRPD 276
G KN ++ + W + +S HA +V ++ L Y+ ++ A W +V + +T Y + DL LI + + + +HH ++ + F + YF L EFSTPFV RWF E LG K+ I NG++MT+ F + R+ M P+ ++ S A L + ++A SSV++ +++N W + KG KV+ G+ + + G+ D
Sbjct: 37 GFKNLSQKRKIEWNSRTVSTFHALMVGGFCLYILLYDDAVN-----------ADRLW----GDPSIVKLNIAITTGYLISDLLLIIYYWKAIGDKFFV-IHHLAALYAYYFVLSKGLLAYFGNFRLLAEFSTPFVNQRWFF---EILGYPKSSKANIINGVLMTVVFFVVRIAVM-PVYYGHVISSFGTEAFQRLGFAAQSAWIISSVVL--DIMNVMWMVKIAKGCYKVICLTGREEAKTHRNGKSD 262
BLAST of EWM30342.1 vs. NCBI_GenBank
Match: gi|679000164|gb|KFW03332.1| (Transmembrane protein 56-B, partial [Eurypyga helias]) HSP 1 Score: 68.1662 bits (165), Expect = 1.592e-9 Identity = 64/248 (25.81%), Postives = 110/248 (44.35%), Query Frame = 0
Query: 36 GLKN--KRLRASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSDVVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLG--KNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAILVSAPHSAESGLPWTVRAA---SSVLVLPNLLNAYWGYIMIKGLTKVLFSLGKPCKEASKAGRPD 276
G KN ++ + W + +S HA +V ++ L Y+ ++ A W +V + +T Y + DL LI + + + +HH ++ + F + YF L EFSTPFV RWF E LG K+ I NG++MT+ F + R+ M P+ ++ S A L + ++A SSV++ +++N W + KG KV+ G+ + + G+ D
Sbjct: 36 GFKNLSQKRKIEWNSRTVSTFHALMVGGFCLYILLYDDAVN-----------ADRLW----GDPSIVKLNIAITTGYLISDLLLIIYYWKAIGDKFFV-IHHLAALYAYYFVLSKGLLAYFGNFRLLAEFSTPFVNQRWFF---EILGYPKSSKANIINGVLMTVVFFVVRIAVM-PVYYGHVISSFGTEAFQRLGFAAQSAWIISSVVL--DIMNVMWMVKIAKGCYKVICLTGREEAKTHRNGKSD 261
BLAST of EWM30342.1 vs. NCBI_GenBank
Match: gi|950983239|ref|XP_014502726.1| (PREDICTED: transmembrane protein 56-B-like isoform X1 [Vigna radiata var. radiata]) HSP 1 Score: 67.781 bits (164), Expect = 2.271e-9 Identity = 61/221 (27.60%), Postives = 105/221 (47.51%), Query Frame = 0
Query: 43 RASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSDVVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLG--KNHPLYIFNGIIMTIAFALCR--LCPMLPLNIWAILVSAPHSAESGLPWTVRAASSVLVLPNLLNAYWGYIMIKGLTKVL 259
+ W + S HA V++ S + +F +E + ++ ++ + SD V +++ YFL DLA+I +W+ + LHHG+SI + + H ++L L E +TPFV RW++ D+ K+ LYI+NGI + + + + R L L +IW LV G +T+ SVL ++N +W + + KG+ K L
Sbjct: 60 KIEWNNRGFSTFHALFVSSASFYLIFLSDVFNENSQEVVINKSSRL--------SDTVL---GISIGYFLTDLAMI-LWKFPALGGLEYVLHHGLSIGSITLSLLSGQVHIYILMVLFSESTTPFVNLRWYL----DIAGLKSSKLYIWNGIALFLGWLVARIFLFMFLFYHIWTHLVEVQEVFLFGF-YTLIMVPSVLA---VMNIFWFWKIAKGMVKTL 260
BLAST of EWM30342.1 vs. NCBI_GenBank
Match: gi|679188834|gb|KFW79573.1| (Transmembrane protein 56-B, partial [Manacus vitellinus]) HSP 1 Score: 67.3958 bits (163), Expect = 2.821e-9 Identity = 66/249 (26.51%), Postives = 111/249 (44.58%), Query Frame = 0
Query: 36 GLKN--KRLRASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSD--VVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLG--KNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAILVSAPHSAESGLPWTVRAA---SSVLVLPNLLNAYWGYIMIKGLTKVLFSLGKPCKEASKAGRP 275
G KN ++ + W + +S HA VV ++ L Y+ DA + H D +V + +T Y + DL LI + + + +HH ++ + F + YF L EFSTPFV RWF E LG K+ I NG++MT+ F + R+ M P+ ++ S A L + ++A SSV++ +++N W + KG KV+ +G+ + + G+
Sbjct: 36 GFKNLSQKRKIEWNSRTVSTFHALVVGGFCLYILLYD-------------DAVNAD----HLWGDPSIVKLNIAITTGYLISDLLLIIYYWKAIGDKFFV-IHHLAALYAYYFVLSKGLLAYFGNFRLLAEFSTPFVNQRWFF---EVLGYPKSSKANIMNGVLMTVVFFVVRIAVM-PIYYSHVIASFGTEAFHRLGFAAQSAWIISSVVL--DIMNVMWMVKIAKGCYKVICLIGREEAKTHRNGKS 260
BLAST of EWM30342.1 vs. NCBI_GenBank
Match: gi|1051199174|ref|XP_017682688.1| (PREDICTED: transmembrane protein 56-B-like [Lepidothrix coronata] >gi|1051199176|ref|XP_017682690.1| PREDICTED: transmembrane protein 56-B-like [Lepidothrix coronata] >gi|1051199178|ref|XP_017682691.1| PREDICTED: transmembrane protein 56-B-like [Lepidothrix coronata] >gi|1051199180|ref|XP_017682692.1| PREDICTED: transmembrane protein 56-B-like [Lepidothrix coronata] >gi|1051199182|ref|XP_017682693.1| PREDICTED: transmembrane protein 56-B-like [Lepidothrix coronata] >gi|1051199184|ref|XP_017682694.1| PREDICTED: transmembrane protein 56-B-like [Lepidothrix coronata] >gi|1051199186|ref|XP_017682695.1| PREDICTED: transmembrane protein 56-B-like [Lepidothrix coronata] >gi|1051199188|ref|XP_017682696.1| PREDICTED: transmembrane protein 56-B-like [Lepidothrix coronata] >gi|1062861537|ref|XP_017937242.1| PREDICTED: transmembrane protein 56 [Manacus vitellinus] >gi|1062861541|ref|XP_017937243.1| PREDICTED: transmembrane protein 56 [Manacus vitellinus]) HSP 1 Score: 67.3958 bits (163), Expect = 2.940e-9 Identity = 66/249 (26.51%), Postives = 111/249 (44.58%), Query Frame = 0
Query: 36 GLKN--KRLRASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSD--VVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLG--KNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAILVSAPHSAESGLPWTVRAA---SSVLVLPNLLNAYWGYIMIKGLTKVLFSLGKPCKEASKAGRP 275
G KN ++ + W + +S HA VV ++ L Y+ DA + H D +V + +T Y + DL LI + + + +HH ++ + F + YF L EFSTPFV RWF E LG K+ I NG++MT+ F + R+ M P+ ++ S A L + ++A SSV++ +++N W + KG KV+ +G+ + + G+
Sbjct: 37 GFKNLSQKRKIEWNSRTVSTFHALVVGGFCLYILLYD-------------DAVNAD----HLWGDPSIVKLNIAITTGYLISDLLLIIYYWKAIGDKFFV-IHHLAALYAYYFVLSKGLLAYFGNFRLLAEFSTPFVNQRWFF---EVLGYPKSSKANIMNGVLMTVVFFVVRIAVM-PIYYSHVIASFGTEAFHRLGFAAQSAWIISSVVL--DIMNVMWMVKIAKGCYKVICLIGREEAKTHRNGKS 261 The following BLAST results are available for this feature:
BLAST of EWM30342.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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