EWM30342.1, cds456 (CDS) Nannochloropsis gaditana

Overview
NameEWM30342.1
Unique Namecds456
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1138455..1138832 -
Alignment locationCM002455.1:1137690..1138283 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30342.1
ProductTRAM, LAG1 and CLN8 lipid-sensing domain containing protein
Orig transcript idgnl|cribi|Naga_100003g23.1859.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1138455..1138832 -
CM002455.1supercontigCM002455.1:1137690..1138283 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR006634TLC-dom
Homology
BLAST of EWM30342.1 vs. NCBI_GenBank
Match: gi|585113001|gb|EWM30342.1| (TRAM, LAG1 and CLN8 lipid-sensing domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 660.218 bits (1702), Expect = 0.000e+0
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 0
Query:    1 MFLTSTKPLDVLGKVIVSFLLVSAVFYGFFLLDIVGLKNKRLRASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSDVVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLGKNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAILVSAPHSAESGLPWTVRAASSVLVLPNLLNAYWGYIMIKGLTKVLFSLGKPCKEASKAGRPDNVLKMEKSTEASSPWLPSPAAKRPSQARATALATPSTQGCEQGLKAA 323
            MFLTSTKPLDVLGKVIVSFLLVSAVFYGFFLLDIVGLKNKRLRASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSDVVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLGKNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAILVSAPHSAESGLPWTVRAASSVLVLPNLLNAYWGYIMIKGLTKVLFSLGKPCKEASKAGRPDNVLKMEKSTEASSPWLPSPAAKRPSQARATALATPSTQGCEQGLKAA
Sbjct:    1 MFLTSTKPLDVLGKVIVSFLLVSAVFYGFFLLDIVGLKNKRLRASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSDVVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLGKNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAILVSAPHSAESGLPWTVRAASSVLVLPNLLNAYWGYIMIKGLTKVLFSLGKPCKEASKAGRPDNVLKMEKSTEASSPWLPSPAAKRPSQARATALATPSTQGCEQGLKAA 323          
BLAST of EWM30342.1 vs. NCBI_GenBank
Match: gi|961072662|ref|XP_014783289.1| (PREDICTED: transmembrane protein 56-B-like [Octopus bimaculoides] >gi|918336310|gb|KOF98246.1| hypothetical protein OCBIM_22026596mg [Octopus bimaculoides])

HSP 1 Score: 77.411 bits (189), Expect = 8.353e-13
Identity = 68/223 (30.49%), Postives = 103/223 (46.19%), Query Frame = 0
Query:   43 RASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSDVVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLGKNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAIL-VSAPHSAESGLPWTVRAASSVLVLPNLLNAYWGYIMIKGLTKVLFSLGK 264
            +  W  + +S +HA VV++M  + L Y+          L +D   + W      + VV  +  + + Y + DL ++ V   +   ++  F HHG SI  + + +      YF    L  EFSTPFV  RWF L      K   L++ NGI+MTI F L R+  M PL  + +  V   HS  +          + +VL + +N YW Y M  G+ KVL S  K
Sbjct:   51 KIDWNTRVISSIHAAVVSSMCAYTLLYDAG--------LSKDP--IWWD-----APVVRTSCAIVVGYMVADLIIMTV-HYKTIGEVFYFFHHGASIYAYVYVMTIGVLPYFANYRLIAEFSTPFVNQRWF-LDVLGYEKKSSLFVVNGIVMTIVFFLVRVACM-PLYWYKVYSVCGTHSFITLGHMRYVLVFTCVVLDS-INLYWFYRMCAGVRKVLTSHDK 254          
BLAST of EWM30342.1 vs. NCBI_GenBank
Match: gi|1013948120|gb|KYR01785.1| (hypothetical protein DLAC_01797 [Dictyostelium lacteum])

HSP 1 Score: 72.0182 bits (175), Expect = 6.577e-11
Identity = 47/158 (29.75%), Postives = 79/158 (50.00%), Query Frame = 0
Query:  109 AYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLGKNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAILVSAPHSAESGLPWTVRAASSV-LVLPNLLNAYWGYIMIKGLTKVLFSLGKP 265
             YFL+D  L+  +   F    L   HH + +  +  GI    CH+ L+  +  E +TPFV +RW + Q+    K+  LY+ NG+ + + F + R+   +PL+I    +   +     LP  V   +    VL NLLN +W +++ +GL ++ FS  K 
Sbjct:  113 GYFLYDTLLVCYYRNLFDYGTL--FHHVLGLYLYNIGIVCGNCHFVLISYIFTEITTPFVNFRWILYQTNR--KDGLLYMINGLCLALGFLIVRVI-YIPLSI-GYQLYDKYPLSFALPEFVWYGTYFGFVLINLLNMFWAFLIWRGLIRLAFSSNKQ 264          
BLAST of EWM30342.1 vs. NCBI_GenBank
Match: gi|694398496|ref|XP_009374425.1| (PREDICTED: transmembrane protein 56-like [Pyrus x bretschneideri] >gi|694398498|ref|XP_009374426.1| PREDICTED: transmembrane protein 56-like [Pyrus x bretschneideri] >gi|694398500|ref|XP_009374427.1| PREDICTED: transmembrane protein 56-like [Pyrus x bretschneideri])

HSP 1 Score: 69.3218 bits (168), Expect = 6.634e-10
Identity = 67/257 (26.07%), Postives = 110/257 (42.80%), Query Frame = 0
Query:   18 SFLLVSAVFYGFFLLDIV-------------GLKN--KRLRASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSDVVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLGKNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAILVSAPHSAESGLPWTVRAASSVLVLP--NLLNAYWGYIMIKGLTK 257
             F L+++VF+G  L +IV             G     K  +  W  +  S VHA  VA  S + +      HE        D      P+V  RS +      +++ YFL DL ++  W       +   LHHG+S+ +    +       ++L  L  E +TPFV  RW++  +    KN  LY+FNG+ M + +   R+     L I+  +    H  +    + +   S +LV P   ++N +W + + KGL K
Sbjct:   22 EFHLLASVFFGIILCNIVYRLTQLISLLSVKGYDKLTKAEKVEWNNRGFSTVHAIAVAFASFYLVVLSDTFHED-----HHDE-----PIVSRRSTISDTTLGISIGYFLSDLGMV-FWHFPALGGLEYVLHHGLSMYSILLSLISGKGQIYILMVLFSESTTPFVNMRWYLYVAGK--KNSNLYVFNGVAMFLGWLAARVL----LFIYFFVHMFIHFDQVKTIFPLGFYSLLLVPPMLTMMNLFWFWKITKGLIK 261          
BLAST of EWM30342.1 vs. NCBI_GenBank
Match: gi|676476974|ref|XP_009060969.1| (hypothetical protein LOTGIDRAFT_219318 [Lottia gigantea] >gi|556099597|gb|ESO88249.1| hypothetical protein LOTGIDRAFT_219318 [Lottia gigantea])

HSP 1 Score: 68.9366 bits (167), Expect = 7.891e-10
Identity = 52/228 (22.81%), Postives = 100/228 (43.86%), Query Frame = 0
Query:   43 RASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSDVVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLGKNHPLYIFNGIIMTIAFALCRLC--PMLPLNIWAILVSAPHSAESGLPWTVRAASSVLVLPNLLNAYWGYIMIKGLTKVLFSLGKPCKE 268
            +  W  +  S +HAT V+ M +++L Y++++ +                 + A S +V  +  + + Y   D+ ++ +   +  +    F HHG S+  + + + +    YF    L  EFSTPFV  RWF L      K   +++ NG+ MTI F   R+   P     +++++ +        +   +     +L   + +N +W Y M +G+ +VL    K   E
Sbjct:   52 QIDWNTRFNSTIHATFVSCMCVYSLIYDEDISK---------------EPIWADSPMVRTSCAIVVGYMTCDILIMTIHYKKIGEA-FYFFHHGASMYAYFYVMTYGVLPYFANFRLMAEFSTPFVNQRWF-LDKLKYSKTSKIFMLNGLAMTITFFFVRIAVMPTYWKRVYSVIGTESFKRLGHISLVLVITCFIL---DSINLFWFYKMCQGVKRVLKIYAKKNME 259          
BLAST of EWM30342.1 vs. NCBI_GenBank
Match: gi|704250899|ref|XP_010147879.1| (PREDICTED: transmembrane protein 56 [Eurypyga helias])

HSP 1 Score: 68.1662 bits (165), Expect = 1.343e-9
Identity = 64/248 (25.81%), Postives = 110/248 (44.35%), Query Frame = 0
Query:   36 GLKN--KRLRASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSDVVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLG--KNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAILVSAPHSAESGLPWTVRAA---SSVLVLPNLLNAYWGYIMIKGLTKVLFSLGKPCKEASKAGRPD 276
            G KN  ++ +  W  + +S  HA +V    ++ L Y+  ++           A   W        +V +   +T  Y + DL LI  +      +  + +HH  ++  + F +      YF    L  EFSTPFV  RWF    E LG  K+    I NG++MT+ F + R+  M P+    ++ S    A   L +  ++A   SSV++  +++N  W   + KG  KV+   G+   +  + G+ D
Sbjct:   37 GFKNLSQKRKIEWNSRTVSTFHALMVGGFCLYILLYDDAVN-----------ADRLW----GDPSIVKLNIAITTGYLISDLLLIIYYWKAIGDKFFV-IHHLAALYAYYFVLSKGLLAYFGNFRLLAEFSTPFVNQRWFF---EILGYPKSSKANIINGVLMTVVFFVVRIAVM-PVYYGHVISSFGTEAFQRLGFAAQSAWIISSVVL--DIMNVMWMVKIAKGCYKVICLTGREEAKTHRNGKSD 262          
BLAST of EWM30342.1 vs. NCBI_GenBank
Match: gi|679000164|gb|KFW03332.1| (Transmembrane protein 56-B, partial [Eurypyga helias])

HSP 1 Score: 68.1662 bits (165), Expect = 1.592e-9
Identity = 64/248 (25.81%), Postives = 110/248 (44.35%), Query Frame = 0
Query:   36 GLKN--KRLRASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSDVVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLG--KNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAILVSAPHSAESGLPWTVRAA---SSVLVLPNLLNAYWGYIMIKGLTKVLFSLGKPCKEASKAGRPD 276
            G KN  ++ +  W  + +S  HA +V    ++ L Y+  ++           A   W        +V +   +T  Y + DL LI  +      +  + +HH  ++  + F +      YF    L  EFSTPFV  RWF    E LG  K+    I NG++MT+ F + R+  M P+    ++ S    A   L +  ++A   SSV++  +++N  W   + KG  KV+   G+   +  + G+ D
Sbjct:   36 GFKNLSQKRKIEWNSRTVSTFHALMVGGFCLYILLYDDAVN-----------ADRLW----GDPSIVKLNIAITTGYLISDLLLIIYYWKAIGDKFFV-IHHLAALYAYYFVLSKGLLAYFGNFRLLAEFSTPFVNQRWFF---EILGYPKSSKANIINGVLMTVVFFVVRIAVM-PVYYGHVISSFGTEAFQRLGFAAQSAWIISSVVL--DIMNVMWMVKIAKGCYKVICLTGREEAKTHRNGKSD 261          
BLAST of EWM30342.1 vs. NCBI_GenBank
Match: gi|950983239|ref|XP_014502726.1| (PREDICTED: transmembrane protein 56-B-like isoform X1 [Vigna radiata var. radiata])

HSP 1 Score: 67.781 bits (164), Expect = 2.271e-9
Identity = 61/221 (27.60%), Postives = 105/221 (47.51%), Query Frame = 0
Query:   43 RASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSDVVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLG--KNHPLYIFNGIIMTIAFALCR--LCPMLPLNIWAILVSAPHSAESGLPWTVRAASSVLVLPNLLNAYWGYIMIKGLTKVL 259
            +  W  +  S  HA  V++ S + +F     +E +  ++   ++ +        SD V     +++ YFL DLA+I +W+      +   LHHG+SI +    +     H ++L  L  E +TPFV  RW++    D+   K+  LYI+NGI + + + + R  L   L  +IW  LV        G  +T+    SVL    ++N +W + + KG+ K L
Sbjct:   60 KIEWNNRGFSTFHALFVSSASFYLIFLSDVFNENSQEVVINKSSRL--------SDTVL---GISIGYFLTDLAMI-LWKFPALGGLEYVLHHGLSIGSITLSLLSGQVHIYILMVLFSESTTPFVNLRWYL----DIAGLKSSKLYIWNGIALFLGWLVARIFLFMFLFYHIWTHLVEVQEVFLFGF-YTLIMVPSVLA---VMNIFWFWKIAKGMVKTL 260          
BLAST of EWM30342.1 vs. NCBI_GenBank
Match: gi|679188834|gb|KFW79573.1| (Transmembrane protein 56-B, partial [Manacus vitellinus])

HSP 1 Score: 67.3958 bits (163), Expect = 2.821e-9
Identity = 66/249 (26.51%), Postives = 111/249 (44.58%), Query Frame = 0
Query:   36 GLKN--KRLRASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSD--VVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLG--KNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAILVSAPHSAESGLPWTVRAA---SSVLVLPNLLNAYWGYIMIKGLTKVLFSLGKPCKEASKAGRP 275
            G KN  ++ +  W  + +S  HA VV    ++ L Y+             DA +      H   D  +V +   +T  Y + DL LI  +      +  + +HH  ++  + F +      YF    L  EFSTPFV  RWF    E LG  K+    I NG++MT+ F + R+  M P+    ++ S    A   L +  ++A   SSV++  +++N  W   + KG  KV+  +G+   +  + G+ 
Sbjct:   36 GFKNLSQKRKIEWNSRTVSTFHALVVGGFCLYILLYD-------------DAVNAD----HLWGDPSIVKLNIAITTGYLISDLLLIIYYWKAIGDKFFV-IHHLAALYAYYFVLSKGLLAYFGNFRLLAEFSTPFVNQRWFF---EVLGYPKSSKANIMNGVLMTVVFFVVRIAVM-PIYYSHVIASFGTEAFHRLGFAAQSAWIISSVVL--DIMNVMWMVKIAKGCYKVICLIGREEAKTHRNGKS 260          
BLAST of EWM30342.1 vs. NCBI_GenBank
Match: gi|1051199174|ref|XP_017682688.1| (PREDICTED: transmembrane protein 56-B-like [Lepidothrix coronata] >gi|1051199176|ref|XP_017682690.1| PREDICTED: transmembrane protein 56-B-like [Lepidothrix coronata] >gi|1051199178|ref|XP_017682691.1| PREDICTED: transmembrane protein 56-B-like [Lepidothrix coronata] >gi|1051199180|ref|XP_017682692.1| PREDICTED: transmembrane protein 56-B-like [Lepidothrix coronata] >gi|1051199182|ref|XP_017682693.1| PREDICTED: transmembrane protein 56-B-like [Lepidothrix coronata] >gi|1051199184|ref|XP_017682694.1| PREDICTED: transmembrane protein 56-B-like [Lepidothrix coronata] >gi|1051199186|ref|XP_017682695.1| PREDICTED: transmembrane protein 56-B-like [Lepidothrix coronata] >gi|1051199188|ref|XP_017682696.1| PREDICTED: transmembrane protein 56-B-like [Lepidothrix coronata] >gi|1062861537|ref|XP_017937242.1| PREDICTED: transmembrane protein 56 [Manacus vitellinus] >gi|1062861541|ref|XP_017937243.1| PREDICTED: transmembrane protein 56 [Manacus vitellinus])

HSP 1 Score: 67.3958 bits (163), Expect = 2.940e-9
Identity = 66/249 (26.51%), Postives = 111/249 (44.58%), Query Frame = 0
Query:   36 GLKN--KRLRASWALKALSVVHATVVATMSIWALFYEKNMHEITTGILQRDAASVRWPLVHARSD--VVAVAAPLTLAYFLFDLALIPVWEGRFAQQILIFLHHGISIVTWPFGICHPACHYFLLCCLSMEFSTPFVQYRWFILQSEDLG--KNHPLYIFNGIIMTIAFALCRLCPMLPLNIWAILVSAPHSAESGLPWTVRAA---SSVLVLPNLLNAYWGYIMIKGLTKVLFSLGKPCKEASKAGRP 275
            G KN  ++ +  W  + +S  HA VV    ++ L Y+             DA +      H   D  +V +   +T  Y + DL LI  +      +  + +HH  ++  + F +      YF    L  EFSTPFV  RWF    E LG  K+    I NG++MT+ F + R+  M P+    ++ S    A   L +  ++A   SSV++  +++N  W   + KG  KV+  +G+   +  + G+ 
Sbjct:   37 GFKNLSQKRKIEWNSRTVSTFHALVVGGFCLYILLYD-------------DAVNAD----HLWGDPSIVKLNIAITTGYLISDLLLIIYYWKAIGDKFFV-IHHLAALYAYYFVLSKGLLAYFGNFRLLAEFSTPFVNQRWFF---EVLGYPKSSKANIMNGVLMTVVFFVVRIAVM-PIYYSHVIASFGTEAFHRLGFAAQSAWIISSVVL--DIMNVMWMVKIAKGCYKVICLIGREEAKTHRNGKS 261          
The following BLAST results are available for this feature:
BLAST of EWM30342.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113001|gb|EWM30342.1|0.000e+0100.00TRAM, LAG1 and CLN8 lipid-sensing domain containin... [more]
gi|961072662|ref|XP_014783289.1|8.353e-1330.49PREDICTED: transmembrane protein 56-B-like [Octopu... [more]
gi|1013948120|gb|KYR01785.1|6.577e-1129.75hypothetical protein DLAC_01797 [Dictyostelium lac... [more]
gi|694398496|ref|XP_009374425.1|6.634e-1026.07PREDICTED: transmembrane protein 56-like [Pyrus x ... [more]
gi|676476974|ref|XP_009060969.1|7.891e-1022.81hypothetical protein LOTGIDRAFT_219318 [Lottia gig... [more]
gi|704250899|ref|XP_010147879.1|1.343e-925.81PREDICTED: transmembrane protein 56 [Eurypyga heli... [more]
gi|679000164|gb|KFW03332.1|1.592e-925.81Transmembrane protein 56-B, partial [Eurypyga heli... [more]
gi|950983239|ref|XP_014502726.1|2.271e-927.60PREDICTED: transmembrane protein 56-B-like isoform... [more]
gi|679188834|gb|KFW79573.1|2.821e-926.51Transmembrane protein 56-B, partial [Manacus vitel... [more]
gi|1051199174|ref|XP_017682688.1|2.940e-926.51PREDICTED: transmembrane protein 56-B-like [Lepido... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna456rna456Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications