rna4554, rna4554 (mRNA) Nannochloropsis gaditana

Overview
Namerna4554
Unique Namerna4554
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2170
Alignment locationCM002463.1:901233..903535 +

Link to JBrowse

Properties
Property NameValue
Productmpv17-like protein
Orig transcript idgnl|cribi|Naga_100014g31.9309.mrna
Orig protein idgnl|cribi|Naga_100014g31.9309
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:901233..903535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100014g31gene4394Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4554rna4554-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26132.1cds4542Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4554 ID=rna4554|Name=rna4554|organism=Nannochloropsis gaditana|type=mRNA|length=2170bp
AGTAACCCCTCGCCCCCTCGACGAGGGTACACACATCTCCGTGCGTGCTG
ATGCCTGTTTTGCAAGATGACCGACACGTTGTCTTCAGTCAAATAGATCT
GGCATCACATATTATTGTGTGGCCCGTGGGGCATTAACATCCGTGTGAAC
CCTTCCTGTCTGACAGACGCGACTGGGCTATAATTCGAACCAGAATACAC
TATGCTTTGAAAATTAGGTATGATTGAAGACTGGTATTTGATTTCAGGCA
GTTTTTGCGGCATTAATGGCCGAGGTCAGATTTGTGTCCAGCCCTACTGA
GACTATGTGTAGCCATTCATGAGATAGATCTCTTCTCTCTGTCCCGTTAC
TATGCGGTGCCTGTTCAAGAACAACCCTATCACATTGGACAATTAGTTAA
GCTTTCCACTGTCCTGCAGTGCGTCGTTGTCCCGGCGGGTGTGGAGAGAC
ATGCTGCAAGTGGCTCACGGGTTTCGACACGCGAGTCAATTAACGTTTCC
TCCTGTTCCCGTACTTGATACAGGTCACCTTTCTACCTAACACCATGTTT
GGACGCCTCTGGTCGCAATACAATGTCGCGCTTGAGAAGAACCCCTTGTT
AATCAAGGCCCTGACTTCCCTGACCGGCTTTACCATCGGGGACGTGCTGG
CGCAGAAGTTCGTCACGCCGGACGAGGAGAAAGGCTACGACCTGATGCGT
ACCGTGCGCTTGGGCTCCTTCGGCTTCCTCGTCCACGGCCCTACTGGGCA
CTTTTTCTACGGATGGCTCGACAAGCAAATTCCGGGCACGGCCATGAAGA
CTGTGGCGACCAAGGTGGCTATTGATCAGCTCCTGTGGAACCCCTGCTTC
GGGGTCATGTTCTTCAGCTACCTGGGATTGGCCGAGGGCAAGTCCTTCAC
GGACATTCAGGCGAAGATCAAAAATGATCTTGCGACTGCGGTGGTGGGTT
CTTGGACGGTCTGGATCCCCGCGCACTTCATCAACTTCCGCTTCGTCCCT
TCCAATCAGCGACTGCTCTACATCAACTCCATCCAGATCGGGTACAATAT
CTTCCTGTCCTTCTTGGGGAACAAGAAGGTGGACGACACCGAGGAGCTCA
AGGCGGCGGCCAAGTAGAAGATGGAGCGGATGGTGGGGGCGTGGGCAAAT
GGGGGAAAGATAGTAGCACCCTGCAACGCCGACCGCAAGAGTGACGGGGG
GGAAATGCCATGGATGGCAGTCGGGGTGCTCCGAGGGCGGAGGCATGCGT
GCGTTGTGTGGGATGGATGCTGAGCAGGACGCGGGGGAATATATGTGTCA
GCCTTAATTTTATGTAGGGGCAGAGAACCAGGGTGGCTGAGAGGGAGTGC
ATTCGCAGGATAAGAGCCTTCCCTCTTCCCGCACCATGGCGCACAAGCAT
ACGCAATGCGTGACATGGCTCTATTAACACATGTACATGCGAGCCCTCAA
AGAAAAAACGATTAGAAGAGAACCTGGAGAGAGGATAACCGAGCCACGGA
CCACCCGCGGACCGCGCCTTGCCTTACGACCCCCTTGCGATCCGACGCCC
GCATGCCTGAGATATGCATGAGTGAGCGTGACAAAGCAGAAGGATACCTC
CTTCGGGAGGCGTGTTGTTTATGCTTCATTTCGATCCCATCCAGTCATAC
ATTATCTGCGTGCACTTGACACAGGAAAGGTAGTACAACACGACATTCCC
CGTCGACCATGGCAACCCGAGGCAAAGCGAATAAGCAGGGAGAGGGCGGT
GGAGCAGGAGAGCGGTCGGCCTTGAACCCGCTCGAGAAGAGGCCAGAGGA
CCGAACGCCGTACGAGAAGATCGAGATGGCTACGAAGCGCATTATGCCCG
AGGGCCAGCACCAGCAAGACAAGCAGAAGCCCTGGCACACCCCCACGAAG
AATGGATCCGCGAAGGAATAAGCGCGAGGACTCAAGCAATCGCTCGGAGA
GCCTGTGAGGTATTTCGCATAGTCAGTACAGAGCCAAGAAGAATGGTGGA
CCCGAAAAAGACGAAGAAAGGTTTTAGGACGAGATGCAGACAAGAAAGAG
GGAGACTTGGAGGTGGGCGAAAATATTCACAACGTGTGCGTTGATCATGT
TTATAAATGAAATCAGATCCCGAATGCAGCCAAAATTTGATACAATTTGG
AACGAAATTGACCACAGCCT
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protein sequence of rna4554

>rna4554-protein ID=rna4554-protein|Name=rna4554|organism=Nannochloropsis gaditana|type=polypeptide|length=190bp
MFGRLWSQYNVALEKNPLLIKALTSLTGFTIGDVLAQKFVTPDEEKGYDL
MRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNP
CFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRF
VPSNQRLLYINSIQIGYNIFLSFLGNKKVDDTEELKAAAK
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mRNA from alignment at CM002463.1:901233..903535+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4554 ID=rna4554|Name=rna4554|organism=Nannochloropsis gaditana|type=mRNA|length=2303bp|location=Sequence derived from alignment at CM002463.1:901233..903535+ (Nannochloropsis gaditana)
AGTaacccctcgccccctcgaCGAGGGTACACACATCTCCGTGCGTGCTG
ATGCCTGTTTTGCAAGATGACCGACACGTTGTCTTCAGTCAAATAGATCT
GGCATCACATATTATTGTGTGGCCCGTGGGGCATTAACATCCGTGTGAAC
CCTTCCTGTCTGACAGACGCGACTGGGCTATAATTCGAACCAGAATACAC
TATGCTTTGAAAATTAGGTATGATTGAAGACTGGTATTTGATTTCAGGCA
GTTTTTGCGGCATTAATGGCCGAGGTCAGATTTGTGTCCAGCCCTACTGA
GACTATGTGTAGCCATTCATGAGATAGATCTCTTCTCTCTGTCCCGTTAC
TATGCGGTGCCTGTTCAAGAACAACCCTATCACATTGGACAATTAGTTAA
GCTTTCCACTGTCCTGCAGTGCGTCGTTGTCCCGGCGGGTGTGGAGAGAC
ATGCTGCAAGTGGCTCACGGGTTTCGACACGCGAGTCAATTAACGTTTCC
TCCTGTTCCCGTACTTGATACAGGTCACCTTTCTACCTAACACCATGTTT
GGACGCCTCTGGTCGCAATACAATGTCGCGCTTGAGAAGAACCCCTTGTT
AATCAAGGCCCTGACTTCCCTGACCGGCTTTACCATCGGGGACGTGCTGG
CGCAGAAGTTCGTCAcgccggacgaggagaaaggctaCGACCTGATGCGT
ACCGTGCGCTTGGGCTCCTtcggcttcctcgtccacggccctACTGGGCA
CTTTTTCTACGGATGGCTCGACAAGCAAATTCCGGGCACGGCCATGAAGA
CTGTGGCGACCAAGGTGGCTATTGATCAGCTCCTGTGGAACCCCTGCTTC
GGGGTCATGTTCTTCAGCTACCTGGGATTGGCCGAGGGCAAGTCCTTCAC
GGACATTCAGGCGAAGATCAAAAATGATCTTGCGACTGCGGTGGTGGGTT
CTTGGACGGTCTGGATCCCCGCGCACTTCATCAACTTCCGCTTCGTCCCT
TCCAATCAGCGACTGGTACGTGGTTCGGGCGGCCCGACCGGGAATGATCT
CTGAAAGGCTGGGGAAAAGGTGGCATACGACCCTCAATGATGCATGACCC
GCGTGAGGACCTTGTCTCACTATTTACATTCTATATCCCCCCCCGCAGCT
CTACATCAACTCCATCCAGATCGGGTACAATatcttcctgtccttcttgG
GGAACAAGAAGGTGGACGACACCGAGGAGctcaaggcggcggccaagtAG
AAGATGGAGCGGATGGTGGGGGCGTGGGCAAATGGGGGAAAGATAGTAGC
ACCCTGCAACGCCGACCGCAAGAGtgacgggggggaaatgcCATGGATGG
CAGTCGGGGTGctccgagggcggaggcatGCGTGCGTTGTGTGGGATGGA
TGCTGAGCAGGACGCGGGGGAATATATGTGTCAGCCTTAATTTTATGTAG
GGGCAGAGAACCAGGGTGGCTGAGAGGGAGTGCATTCGCAGGATAAgagc
cttccctcttcccgcaccATGGCGCACAAGCATACGCAATGCGTGACATG
GCTCTATTAACACATGTACATGCGAGCCCTCAAAGAAAAAACGATTAGAA
GAGAACCTGGAGAGAGGATAACCGAGCCACGGACCACCCGCGGACCGCGC
CTTGCCTTACGACCCCCTTGCGATCCGACGCCCGCATGCCTGAGATATGC
ATGAGTGAGCGTGACAAAGCAGAAGGATACCTCCTTCGGGAGGCGTGTTG
TTTATGCTTCATTTCGATCCCATCCAGTCATACATTATCTGCGTGCACTT
GACACAGGAAAGGTAGTACAACACGACATTCCCCGTCGACCATGGCAACC
CGAGGCAAAGCGAAtaagcagggagagggcggtggagcaggagagcgGTC
GGCCTTGAACCCGCTCGAGAAGAGGCCAGAGGACCGAACGCCGTACGAGA
AGATCGAGATGGCTACGAAGCGCATTATGCCCGAGGGCCAGCACCAGCAA
GACAAGCAGAAGCCCTGGCACACCCCCACGAAGAATGGATCCGCGAAGGA
ATAAGCGCGAGGACTCAAGCAATCGCTCGGAGAGCCTGTGAGGTATTTCG
CATAGTCAGTACAGAGCCAAGAAGAATGGTGGACCCGAAAAAGACGAAGA
AAGGTTTTAGGACGAGATGCagacaagaaagagggagactTGGAGGTGGG
CGAAAATATTCACAACGTGTGCGTTGATCATGTTTATAAATGAAATCAGA
TCCCGAATGCAGCCAAAATTTGATACAATTTGGAACGAAATTGACCACAG
CCT
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Coding sequence (CDS) from alignment at CM002463.1:901233..903535+

>rna4554 ID=rna4554|Name=rna4554|organism=Nannochloropsis gaditana|type=CDS|length=1146bp|location=Sequence derived from alignment at CM002463.1:901233..903535+ (Nannochloropsis gaditana)
ATGTTTGGACGCCTCTGGTCGCAATACAATGTCGCGCTTGAGAAGAACCC
CTTGTTAATCAAGGCCCTGACTTCCCTGACCGGCTTTACCATCGGGGACG
TGCTGGCGCAGAAGTTCGTCAcgccggacgaggagaaaggctaCGACCTG
ATGCGTACCGTGCGCTTGGGCTCCTtcggcttcctcgtccacggccctAC
TGGGCACTTTTTCTACGGATGGCTCGACAAGCAAATTCCGGGCACGGCCA
TGAAGACTGTGGCGACCAAGGTGGCTATTGATCAGCTCCTGTGGAACCCC
TGCTTCGGGGTCATGTTCTTCAGCTACCTGGGATTGGCCGAGGGCAAGTC
CTTCACGGACATTCAGGCGAAGATCAAAAATGATCTTGCGACTGCGGTGG
TGGGTTCTTGGACGGTCTGGATCCCCGCGCACTTCATCAACTTCCGCTTC
GTCCCTTCCAATCAGCGACTGCTCTACATCAACTCCATCCAGATCGGGTA
CAATatcttcctgtccttcttgGGGAACAAGAAGGTGGACGACACCGAGG
AGctcaaggcggcggccaagtAGATGTTTGGACGCCTCTGGTCGCAATAC
AATGTCGCGCTTGAGAAGAACCCCTTGTTAATCAAGGCCCTGACTTCCCT
GACCGGCTTTACCATCGGGGACGTGCTGGCGCAGAAGTTCGTCAcgccgg
acgaggagaaaggctaCGACCTGATGCGTACCGTGCGCTTGGGCTCCTtc
ggcttcctcgtccacggccctACTGGGCACTTTTTCTACGGATGGCTCGA
CAAGCAAATTCCGGGCACGGCCATGAAGACTGTGGCGACCAAGGTGGCTA
TTGATCAGCTCCTGTGGAACCCCTGCTTCGGGGTCATGTTCTTCAGCTAC
CTGGGATTGGCCGAGGGCAAGTCCTTCACGGACATTCAGGCGAAGATCAA
AAATGATCTTGCGACTGCGGTGGTGGGTTCTTGGACGGTCTGGATCCCCG
CGCACTTCATCAACTTCCGCTTCGTCCCTTCCAATCAGCGACTGCTCTAC
ATCAACTCCATCCAGATCGGGTACAATatcttcctgtccttcttgGGGAA
CAAGAAGGTGGACGACACCGAGGAGctcaaggcggcggccaagtAG
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Synonyms
Publications