EWM26132.1, cds4542 (CDS) Nannochloropsis gaditana

Overview
NameEWM26132.1
Unique Namecds4542
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:901777..902247 +
Alignment locationCM002463.1:902381..902482 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26132.1
Productmpv17-like protein
Orig transcript idgnl|cribi|Naga_100014g31.9309.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:901777..902247 +
CM002463.1supercontigCM002463.1:902381..902482 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Homology
BLAST of EWM26132.1 vs. NCBI_GenBank
Match: gi|585108126|gb|EWM26132.1| (mpv17-like protein [Nannochloropsis gaditana] >gi|585108127|gb|EWM26133.1| mpv17-like protein [Nannochloropsis gaditana])

HSP 1 Score: 391.734 bits (1005), Expect = 5.758e-138
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
Query:    1 MFGRLWSQYNVALEKNPLLIKALTSLTGFTIGDVLAQKFVTPDEEKGYDLMRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRFVPSNQRLLYINSIQIGYNIFLSFLGNKKVDDTEELKAAAK 190
            MFGRLWSQYNVALEKNPLLIKALTSLTGFTIGDVLAQKFVTPDEEKGYDLMRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRFVPSNQRLLYINSIQIGYNIFLSFLGNKKVDDTEELKAAAK
Sbjct:    1 MFGRLWSQYNVALEKNPLLIKALTSLTGFTIGDVLAQKFVTPDEEKGYDLMRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRFVPSNQRLLYINSIQIGYNIFLSFLGNKKVDDTEELKAAAK 190          
BLAST of EWM26132.1 vs. NCBI_GenBank
Match: gi|147905308|ref|NP_001090480.1| (uncharacterized protein LOC779393 [Xenopus laevis] >gi|114107768|gb|AAI23161.1| MGC154358 protein [Xenopus laevis])

HSP 1 Score: 356.681 bits (914), Expect = 6.811e-124
Identity = 167/188 (88.83%), Postives = 178/188 (94.68%), Query Frame = 0
Query:    1 MFGRLWSQYNVALEKNPLLIKALTSLTGFTIGDVLAQKFVTPDEEKGYDLMRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRFVPSNQRLLYINSIQIGYNIFLSFLGNKKVDDTEELKAA 188
            MFGRLW++YN ALE NPLLIKA+TSLTGFT+GD+LAQKFV PD+EKGYDLMRTVRLGSFGFLVHGPTGH+FY WLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSF DIQ KIKNDL TAVVGSWTVWIPAHF+NFRFVPS+QRLLYINSIQIGYNIFLSFLGNKKVD+ E +K A
Sbjct:    1 MFGRLWTKYNAALETNPLLIKAVTSLTGFTLGDILAQKFVMPDKEKGYDLMRTVRLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFADIQTKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNKKVDEPEVVKEA 188          
BLAST of EWM26132.1 vs. NCBI_GenBank
Match: gi|299471154|emb|CBN79011.1| (peroxisomal membrane protein-related [Ectocarpus siliculosus])

HSP 1 Score: 285.034 bits (728), Expect = 1.667e-95
Identity = 133/184 (72.28%), Postives = 160/184 (86.96%), Query Frame = 0
Query:    5 LWSQYNVALEKNPLLIKALTSLTGFTIGDVLAQKFVTPDEEKGYDLMRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRFVPSNQRLLYINSIQIGYNIFLSFLGNKKVDDTEELKAA 188
            +W+ YN AL   PLL+KA+TS TGFT+GD+LAQKF++P+++  YD MRT+RLG+FG LVHGPTGH+FYG LD ++PGT   TVA+KVAIDQ +WNP FGVMFF+YLGLAEGKS  DIQ KIKNDLATAV+GSWTVWIPAH INF+FVP++QRLLYIN+IQIGYNIFLSFLGNKK DD + +K+A
Sbjct:    4 IWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDD--YDFMRTLRLGTFGALVHGPTGHYFYGMLDAKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQIGYNIFLSFLGNKKADD-DSVKSA 184          
BLAST of EWM26132.1 vs. NCBI_GenBank
Match: gi|1210515703|dbj|GAX25226.1| (hypothetical protein FisN_5Lh310 [Fistulifera solaris] >gi|1210524204|dbj|GAX16933.1| hypothetical protein FisN_5Hh310 [Fistulifera solaris])

HSP 1 Score: 268.085 bits (684), Expect = 3.399e-89
Identity = 129/176 (73.30%), Postives = 147/176 (83.52%), Query Frame = 0
Query:    5 LWSQYNVALEKNPLLIKALTSLTGFTIGDVLAQKFVTPDEEKGYDLMRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRFVPSNQRLLYINSIQIGYNIFLSFLGNKKVD 180
            LW++YN  L+  PLL KALTSLTGFT+GDVLAQKFV P  +K YDLMRTVRLGSFGFL+HG TGH+FYG+LD ++PGTA  TVATKVAIDQ +WNP FG+MFF YL   EGKSF D   KIK DL TAV+GSW VW+PAH INF F+P +QRLLYINSIQIGYN+FLSFLGNKKV+
Sbjct:    4 LWARYNKMLDAQPLLTKALTSLTGFTLGDVLAQKFVEP-TDKPYDLMRTVRLGSFGFLIHGTTGHYFYGFLDGKLPGTAPMTVATKVAIDQTIWNPIFGLMFFGYLNFVEGKSFEDYTNKIKADLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQIGYNVFLSFLGNKKVE 178          
BLAST of EWM26132.1 vs. NCBI_GenBank
Match: gi|219126254|ref|XP_002183376.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405132|gb|EEC45076.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 254.988 bits (650), Expect = 6.532e-84
Identity = 119/177 (67.23%), Postives = 143/177 (80.79%), Query Frame = 0
Query:    5 LWSQYNVALEKNPLLIKALTSLTGFTIGDVLAQKFVTPDEEKGYDLMRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRFVPSNQRLLYINSIQIGYNIFLSFLGNKKVDD 181
            LW++YN  L+  PLL KALTS+TGF++GD+LAQ F+  + +KGYD MRT R+GSFGFL+HG TGH+FYG+LD ++PGTA  TVA+KVAIDQ +WNP FG MFF YL L EGKS  D   KIK DL TAV+GSW VW+PAH INF FVP  QRLLYIN+IQIGYN+FLSFLGNK V++
Sbjct:    4 LWARYNSMLDAQPLLTKALTSMTGFSLGDILAQCFIE-EGDKGYDPMRTFRMGSFGFLLHGTTGHYFYGFLDSKLPGTAPMTVASKVAIDQTIWNPIFGCMFFGYLNLMEGKSLDDYTTKIKTDLKTAVMGSWAVWVPAHTINFAFVPPAQRLLYINTIQIGYNVFLSFLGNKSVEE 179          
BLAST of EWM26132.1 vs. NCBI_GenBank
Match: gi|397623117|gb|EJK66898.1| (hypothetical protein THAOC_12131, partial [Thalassiosira oceanica])

HSP 1 Score: 253.062 bits (645), Expect = 2.773e-83
Identity = 122/172 (70.93%), Postives = 141/172 (81.98%), Query Frame = 0
Query:   13 LEKNPLLIKALTSLTGFTIGDVLAQKFVTPDEEKGYDLMRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRFVPSNQRLLYINSIQIGYNIFLSFLGNKKVDDTEE 184
            LE  PLL KALTSLTGF+IGD+LAQKFV  D+ K YD MRT+RLGSFGF VHG TGH+FYG+LD ++PGT  +TVATKV IDQ +WNP FG+MFF YL + EGKSF +   K+K DL TAV+GSW VW+PAH INF FVP +QRLLYINSIQIGYNIFLSFLGNKKVD  ++
Sbjct:    1 LEAQPLLTKALTSLTGFSIGDILAQKFVN-DDGKPYDPMRTLRLGSFGFFVHGTTGHYFYGFLDSKLPGTKPQTVATKVLIDQTMWNPIFGLMFFGYLNVCEGKSFEEYTKKVKADLKTAVMGSWAVWVPAHTINFAFVPPSQRLLYINSIQIGYNIFLSFLGNKKVDGEDK 171          
BLAST of EWM26132.1 vs. NCBI_GenBank
Match: gi|1072235331|gb|OEU20060.1| (hypothetical protein FRACYDRAFT_167937 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 248.825 bits (634), Expect = 1.476e-81
Identity = 120/179 (67.04%), Postives = 138/179 (77.09%), Query Frame = 0
Query:    5 LWSQYNVALEKNPLLIKALTSLTGFTIGDVLAQKFVTPDEEKGYDLMRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRFVPSNQRLLYINSIQIGYNIFLSFLGNKKVDDTE 183
            LW++YN  L+  PLL K  TSLTGFT+GD+LAQKFV P  +K YD+MRTVRLGSFGFL HG TGH+FYG LD ++PGT   TVATKV IDQ +WNP FG  FF YL   EGKS+ D   K+  DL TAV+GSW VW+PAH INF FVP  QRLLYIN+IQIGYNIFLSFLGNK VD+ +
Sbjct:    4 LWARYNKLLDAQPLLTKCFTSLTGFTVGDILAQKFVEP-SDKPYDVMRTVRLGSFGFLFHGSTGHYFYGLLDSKLPGTKPVTVATKVIIDQTIWNPIFGCAFFGYLNAVEGKSWNDYTKKLNADLKTAVMGSWAVWVPAHTINFAFVPPAQRLLYINTIQIGYNIFLSFLGNKAVDEEK 181          
BLAST of EWM26132.1 vs. NCBI_GenBank
Match: gi|223995359|ref|XP_002287363.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220976479|gb|EED94806.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 244.202 bits (622), Expect = 7.617e-80
Identity = 119/169 (70.41%), Postives = 135/169 (79.88%), Query Frame = 0
Query:   18 LLIKALTSLTGFTIGDVLAQKFVTPDEEKGYDLMRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRFVPSNQRLLYINSIQIGYNIFLSFLGNKKVDDTEELK 186
            LL KALTS TGFTIGD+LAQ FV  D+ K YD+MRTVRLGSFGF +HG TGH+FYG+LD + PGT   TVATKV IDQ +WNP FG+MFF YL + EGKSF D + KIK DL TAV+GSW VW+PAH INF F+P  QRLLYINSIQIGYN+FLSFLGNKKV+   E K
Sbjct:    1 LLTKALTSFTGFTIGDILAQNFVN-DDGKPYDVMRTVRLGSFGFFIHGTTGHYFYGFLDSKFPGTKPLTVATKVLIDQTIWNPIFGLMFFGYLNVMEGKSFEDYKNKIKADLKTAVMGSWAVWVPAHTINFAFIPPQQRLLYINSIQIGYNVFLSFLGNKKVEGDAEKK 168          
BLAST of EWM26132.1 vs. NCBI_GenBank
Match: gi|585110478|gb|EWM28134.1| (mpv17-like protein [Nannochloropsis gaditana])

HSP 1 Score: 226.098 bits (575), Expect = 4.877e-71
Identity = 107/173 (61.85%), Postives = 135/173 (78.03%), Query Frame = 0
Query:    5 LWSQYNVALEKNPLLIKALTSLTGFTIGDVLAQKFVTPDEEKGYDLMRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRFVPSNQRLLYINSIQIGYNIFLSFLGNK 177
            LW  YN  L+  PLL KALTS  GF++GD+LAQKF+  D+ +  DL R ++L  FG LVHGPTGH+FYG+LD ++PGT+  TVA+KVAIDQLLWNP FG MFF +LGL EG++   I+ +I+ DL  +V GSWTVW  AH INFRF+P++QRLLYINS+QIGYN+FLSFL N+
Sbjct:  104 LWKGYNQLLKDQPLLTKALTSFVGFSVGDLLAQKFI--DKSEVVDLKRLLKLAFFGLLVHGPTGHYFYGFLDGKMPGTSAVTVASKVAIDQLLWNPIFGTMFFGWLGLTEGQNLEGIKNRIEKDLWASVKGSWTVWPIAHAINFRFIPNSQRLLYINSVQIGYNMFLSFLANR 274          
BLAST of EWM26132.1 vs. NCBI_GenBank
Match: gi|676395101|ref|XP_009040828.1| (hypothetical protein AURANDRAFT_15607, partial [Aureococcus anophagefferens] >gi|323448544|gb|EGB04441.1| hypothetical protein AURANDRAFT_15607, partial [Aureococcus anophagefferens])

HSP 1 Score: 210.305 bits (534), Expect = 1.726e-66
Identity = 101/170 (59.41%), Postives = 125/170 (73.53%), Query Frame = 0
Query:    5 LWSQYNVALEKNPLLIKALTSLTGFTIGDVLAQKFVTPDEEKGYDLMRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRFVPSNQRLLYINSIQIGYNIFLSFL 174
            +W+ Y  ALEK+PLLIK LTS+ GF +GDVLAQ F+   ++  YD+ RT+R  SFG LVHG T H+FYG LD +IPGT    VA+KV IDQ+LWNP FG+MFF Y+G+ EG        KIKNDL T V GSWTVW  AH INF+F+P++QR+LYIN+IQI YN FLS +
Sbjct:    1 VWAAYEAALEKDPLLIKGLTSMIGFFLGDVLAQCFIEKSDK--YDIWRTIRFSSFGLLVHGTTSHWFYGKLDGKIPGTGAGAVASKVGIDQVLWNPIFGIMFFGYMGIFEGSGVGGTITKIKNDLLTQVTGSWTVWPIAHAINFKFIPNSQRVLYINTIQIFYNCFLSII 168          
The following BLAST results are available for this feature:
BLAST of EWM26132.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108126|gb|EWM26132.1|5.758e-138100.00mpv17-like protein [Nannochloropsis gaditana] >gi|... [more]
gi|147905308|ref|NP_001090480.1|6.811e-12488.83uncharacterized protein LOC779393 [Xenopus laevis]... [more]
gi|299471154|emb|CBN79011.1|1.667e-9572.28peroxisomal membrane protein-related [Ectocarpus s... [more]
gi|1210515703|dbj|GAX25226.1|3.399e-8973.30hypothetical protein FisN_5Lh310 [Fistulifera sola... [more]
gi|219126254|ref|XP_002183376.1|6.532e-8467.23predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397623117|gb|EJK66898.1|2.773e-8370.93hypothetical protein THAOC_12131, partial [Thalass... [more]
gi|1072235331|gb|OEU20060.1|1.476e-8167.04hypothetical protein FRACYDRAFT_167937 [Fragilario... [more]
gi|223995359|ref|XP_002287363.1|7.617e-8070.41predicted protein, partial [Thalassiosira pseudona... [more]
gi|585110478|gb|EWM28134.1|4.877e-7161.85mpv17-like protein [Nannochloropsis gaditana][more]
gi|676395101|ref|XP_009040828.1|1.726e-6659.41hypothetical protein AURANDRAFT_15607, partial [Au... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4554rna4554Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications