rna4550, rna4550 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4550
Unique Name	rna4550
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1693
Alignment location	CM002463.1:892447..894838 +

Link to JBrowse

Properties


Property Name	Value
Product	RNA helicase, DEAD-box type
Orig transcript id	gnl\|cribi\|Naga_100014g28.9281.mrna
Orig protein id	gnl\|cribi\|Naga_100014g28.9281
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:892447..894838 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100014g28	gene4391	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4550	rna4550-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26104.1	cds4538	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:892447..894838+
coding sequence from alignment at CM002463.1:892447..894838+

mRNA sequence

>rna4550 ID=rna4550|Name=rna4550|organism=Nannochloropsis gaditana|type=mRNA|length=1693bp
GCCAGGACAAAGGGTCTGAGCGCAGGATGTATCTTTGGCCGCCCTCGCCG
ACCTCCCCCCTCAGGCCCCCGCTCCTTGCACTGACGCGCCTGCCGTACTC
ACACGACAACCGGTCGATAGGTTTTCCGCCGTAGTGTACATGCCGTCTGT
GAAGACAGGAGGAGATCACGAGCTTTCACGGCGGAAGCGTAAAAGTACCC
TTTTGACCTCGCTTCATGCTGCAAACCTTTGCTGCTTCGGTTCTGCCTTC
TTCCTCGTTGTCATCAGTCCAACATGGTGCCATCTCAATTATTTGGCCAA
CGCTTTCGTGCCATTGGTGTACAGCGGGAAATGTCAGCTCCACAACTTCA
GAGCCGCTTCGTCGGCAGGCACTATGGGGCCCCAGCTTTGTGCACGACCC
CGTCGTGCAGCACAGCGTGTGGGGGCGATAGCGATGCGCGTGAAATTCGA
CGTAAAAAAGGATTACTATGCCCGCCTTGACATCGAGAAATCGGCCTCAC
TCAACGATATCAAGCGTGCGTACCGACGGCTGGCCCTGCAGACACACCCC
GACGTGAACAAGGCCCCCGACGCCGCCGAGACCTTCAAGCAGGTTTGTGA
GGCCTACAAGGTGCTCTCGGACGCCGAGGCCCGCAAGGGATACGACCTGG
CCAGGGGTATGCAAGGGTCAGGGTTTGGCAGTGGGGGCAGGCGGTGGACT
AACGTGGGTGGGCGGGGCACGGCCTCCTCCTCTTCCTCCTCCTCGAGAGG
GTGGTACGACCAATATGGTCCGTTCGGGGGGGGTGCGCCGGGCGCGAACG
AGGAGACTGCGGAGAGCATAGACGACAGTTTCAGCAGCATATTCCGAGAT
TTTGTGGGTAACGTAGGGAGCAATGGAGGGCGGGGTTTCCTTGAGGACGT
GGTCAGCTTCCTGGAGAGCAACGTGGACGGGTTCAGCGAGGAGAGCGACG
CGGAGTTTGAAGAGATTTTGAAGGGCGAGGATCTGCAGCTGGTACAGGAC
GAGATCGAGAACCTGAACTTTCTGATCCCCAAGCTCCGGGAGAAGCAGCA
GCAGGCAAAGATCGACGTGATGGTCGCGCAAGGCAAGCTCAGGACCCTGC
AAGCAGCCGCGGCCCGGGACCTCGAAGGTGTGGACCGGCAGCTGGAGGCG
GTGGAGAAAGTGGCGGCCACGCAGGCGCGCGTGAAGGACTTAGAGGGGCA
CATGAAGCGGGCGGACAAGCGGCAGCGGCGGCTGATGCTGCGCGCAGAGG
AGTTGAGGTGGGGGGCGGGGGGAAGGTCCGCTTACTCGAAATATGCGTCG
CCGGGAACGAAAGGAAGCGCAAGTTCTCGGAGCAATACGGGGGAGAGAGG
GGAGAGGGTGGGGGGAGAGATGCGGGGCCGTCCTCCTCCTCGTCGGCGTC
GGGGGCGGGCCCCGGGCACAGGGGAACGTGGAGGAGGAGCTCCAGAGGCT
GAAGAGGGAAATGGGTCTGTGAGGTCGCCCTGGGTGGCGAGGAAAGGGGG
GGAGGAGGACCAGGGGTTTGCGTGACAATGAGCAGCAGCCGGCAAATATT
TTGGAATGTGTGAGTGCGGGGGGCTGGGAGAGGGAGTCGGTGTGACATAG
AGGGGGGAACCTGAGCACACCGTGCGTGCCGCGCGGGGTTCGTGTAAATT
ACGCGATCATGGAAAAAGAAACCACCTGACATTCATACCCGCA

protein sequence of rna4550

>rna4550-protein ID=rna4550-protein|Name=rna4550|organism=Nannochloropsis gaditana|type=polypeptide|length=737bp
MSAYFVKTKHVTMVYVVLSMVNFLCQACPSKSCGQPFTGSTSPLRVTAHG
HSSDPSRLLMPVTCAFTGLYVMGKHKKLLQQQRQHQKKVAKVTKTLTQPK
VKASNKAQRKELEARMARWTKEQKEEAANRRTEEELNEEESDGEEMQENG
VIERNPSASEEGEEEAEGEVDGEAEDNGYDEQRSRVNTKRKHLPSSSEAK
KARKGVDEKSGTALPETPRPEAGSGEGKGSGGGAGKSGAVFFANQPFEDL
PISDATKCALKRLRFVNMTHIQSLAIPPLLAGKDVVAAAKTGSGKTLAFL
VPVVELLSKVKWAARNGTGAIIISPTRELSMQIYGVLRDLCDEGGHPLTH
GLIMGGANRRAEAERLVKGVSILVATPGRLLDHLQNTKGFLTRNLQLLVI
DEADRILEQGFEEDMHQIIKSLPKHRQTMLFSATQTKKVEDLTRLSMQGR
PVFVGAHEEAAVATVGGLEQGYVVCPSDKRFLLLFTFLKRNKQRKIMVFF
SSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQDKGILLCT
DVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGAAGKGRALLFLTA
EEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDA
YRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKG
RLKNTHKDKRFGSTGHKFSANNPYGRREAGDSRQFTR

mRNA from alignment at CM002463.1:892447..894838+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4550 ID=rna4550|Name=rna4550|organism=Nannochloropsis gaditana|type=mRNA|length=2392bp|location=Sequence derived from alignment at CM002463.1:892447..894838+ (Nannochloropsis gaditana)
TTTGTCCTGGCAATGTCAGCGTACTTTGTGAAGACAAAGCACGTTACGAT
GGTATATGTGGTACTCTCTATGGTAAATTTTCTGTGTCAGGCCTGTCCAT
CAAAAAGTTGTGGGCAACCTTTCACTGGAtcgacctctcccctccgAGTC
ACTGCCCATGGCCACTCAAGCGACCCCTCACGTCTTCTCATGCCCGTGAC
TTGCGCATTCACAGGGCTGTACGTCATGGGTAAACATAAAAAgctgctgc
agcagcagcgacagcacCAGAAAAAAGTAGCCAAAGTAACCAAAACGCTG
ACGCAACCCAAGGTCAAGGCCTCAAACAAAGCGCAGCGCAAGGAGCTTGA
GGCCCGGATGGCCCGATGGACAaaagagcagaaagaagaggccgCAAACA
GACGGACTGAGGAAGAGTTGAATGAAGAGGAGTctgacggggaggagatg
caagAAAATGGTGTAATCGAAAGAAATCCGTCCGCCagtgaggaggggga
ggaggaagcagagggggaagtggacggtgaggaagagagtgaggaggagg
aggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggag
gaggaggaggaggaagggcggaggaggaggggaggaggaggaggaggaag
aggaggaggaagtcgaagtcgatcaagaaggaagagaggcaggggaggct
GAAGATAATGGTTATGACGAGCAGCGCTCCCGTGTAAATACCAAACGCAA
GCATCTACCCTCATCCTCCGAGGccaagaaggcgaggaagggcgtggacg
aAAAAAGTGGAACGGCATTGCCCGAAACGCCGCGTCCGGAAGCGGGctct
ggggaagggaagggcagtgggggcggggcgggaaaaaGCGGGGCCGTGTT
CTTTGCCAACCAGCCCTTTGAGGACCTGCCAATATCGGACGCGACCAAAT
GCGCCCTCAAGAGGCTCCGGTTCGTGAACATGACGCACATCCAGTCCCTG
gcgatcccccccctcttggCTGGCAAGGATGTGGTGGCCGCGGCGAAGAC
CGGGTCGGGTAAGacgctcgccttcctcgtcccggtCGTCGAGCTCCTTT
CCAAGGTGAAATGGGCGGCTCGGAACGGGACGGGTGCGATCATCATCTCC
CCGACGCGCGAGCTCTCCATGCAGATCTACGGCGTGCTCCGCGACCTGTG
CGATGAGGGGGGGCATCCCCTCACCCACGGGCTCATCATGGGCGGCGCCA
ACCGACGCGCCGAGGCGGAGCGGCTGGTGAAGGGAGTGAGTATCCTGGTG
GCAACGCCGGGCCGGCTCCTGGACCACCTGCAGAACACGAAGGGGTTCTT
GACCCGGAACCTGCAGCTCTTGGTCATCGACGAAGCGGACCGCATCCTCG
AGCAGGGcttcgaggaggacatgcaCCAAATCATCAAGAGCCTACCCAAG
CACAGGCAGACGATGCTTTTTAGCGCCACGCAGACCAAGAAAGTAGAGGA
CTTGACGCGGCTCTCCATGCAAGGTCGGCCCGTCTTTGTGGGCGCGCACG
AGGAGGCAGCCGTCGCCACCGTGGGGGGCCTGGAGCAGGGCTACGTGGTT
TGTCCCTCCGAcaagcgcttcctccttctcttcaccTTTTTGAAGCGGAA
CAAGCAGAGGAAGATCATGGTCTTCTTCTCATCCTGCAACTCGGTCAAGT
TCCATGCGGAGCTGCTCAACTACATCGACCTCCCCGTCATGGACATCCAC
GGCCGGCAGAAACAACAGCGTCGAACAACCACGTTTTTCCAGTTCTGCCG
ACAGGACAAAGGTATCTTGCTCTGTACGGACGTTGCGGCCCGAGGCTTGG
ACATACCGGCCGTGGACTGGATCATCCAGTATGACCCTCCAGACGACCCG
CGTGAGTACATCCACCGTGTGGGCAGGACGGCGCGCGGGGCCGCGGGGAA
AGGCCGTGCTTTGCTGTTCTTGACAGCAGAGGAAGTGGGCTTTCTGAAGT
ACTTGCGCGCGGCCAAGGTTGCCCTGAACGAGTACGAGTTTCCGGAAAAG
AAGGTGGCGAACGTCCAAGCCCAGTTGACCAAGCTGGTCGAGAAGAACTA
TTACCTGAACAAGTCCGCCCGGGATGCCTATCGATCATACCTCCTAGCCT
ACGCGTCGCATTCGCACAAGGATATATTTAACGTACACGAGCTCGATTTG
CAAGCTGTGGCCCGCGCTTTCGGGTTCTCGGTGCCCCCCCGCGTCGACAT
AAATCTAAGCAGCAAAGGTCCAAAAGGCCGATTGAAAAACACACATAAGG
ACAAGCGATTTGGGAGTACCGGGCACAAGTTTTCCGCCAACAATCCTTAC
GGAAGGCGCGAAGCGGGGGACTCGCGACAGTTCACGCGATGA

Coding sequence (CDS) from alignment at CM002463.1:892447..894838+

>rna4550 ID=rna4550|Name=rna4550|organism=Nannochloropsis gaditana|type=CDS|length=4428bp|location=Sequence derived from alignment at CM002463.1:892447..894838+ (Nannochloropsis gaditana)
ATGTCAGCGTACTTTGTGAAGACAAAGCACGTTACGATGGTATATGTGGT
ACTCTCTATGGTAAATTTTCTGTGTCAGGCCTGTCCATCAAAAAGTTGTG
GGCAACCTTTCACTGGAtcgacctctcccctccgAGTCACTGCCCATGGC
CACTCAAGCGACCCCTCACGTCTTCTCATGCCCGTGACTTGCGCATTCAC
AGGGCTGTACGTCATGGGTAAACATAAAAAgctgctgcagcagcagcgac
agcacCAGAAAAAAGTAGCCAAAGTAACCAAAACGCTGACGCAACCCAAG
GTCAAGGCCTCAAACAAAGCGCAGCGCAAGGAGCTTGAGGCCCGGATGGC
CCGATGGACAaaagagcagaaagaagaggccgCAAACAGACGGACTGAGG
AAGAGTTGAATGAAGAGGAGTctgacggggaggagatgcaagAAAATGGT
GTAATCGAAAGAAATCCGTCCGCCagtgaggagggggaggaggaagcaga
gggggaagtggacggggaggctGAAGATAATGGTTATGACGAGCAGCGCT
CCCGTGTAAATACCAAACGCAAGCATCTACCCTCATCCTCCGAGGccaag
aaggcgaggaagggcgtggacgaAAAAAGTGGAACGGCATTGCCCGAAAC
GCCGCGTCCGGAAGCGGGctctggggaagggaagggcagtgggggcgggg
cgggaaaaaGCGGGGCCGTGTTCTTTGCCAACCAGCCCTTTGAGGACCTG
CCAATATCGGACGCGACCAAATGCGCCCTCAAGAGGCTCCGGTTCGTGAA
CATGACGCACATCCAGTCCCTGgcgatcccccccctcttggCTGGCAAGG
ATGTGGTGGCCGCGGCGAAGACCGGGTCGGGTAAGacgctcgccttcctc
gtcccggtCGTCGAGCTCCTTTCCAAGGTGAAATGGGCGGCTCGGAACGG
GACGGGTGCGATCATCATCTCCCCGACGCGCGAGCTCTCCATGCAGATCT
ACGGCGTGCTCCGCGACCTGTGCGATGAGGGGGGGCATCCCCTCACCCAC
GGGCTCATCATGGGCGGCGCCAACCGACGCGCCGAGGCGGAGCGGCTGGT
GAAGGGAGTGAGTATCCTGGTGGCAACGCCGGGCCGGCTCCTGGACCACC
TGCAGAACACGAAGGGGTTCTTGACCCGGAACCTGCAGCTCTTGGTCATC
GACGAAGCGGACCGCATCCTCGAGCAGGGcttcgaggaggacatgcaCCA
AATCATCAAGAGCCTACCCAAGCACAGGCAGACGATGCTTTTTAGCGCCA
CGCAGACCAAGAAAGTAGAGGACTTGACGCGGCTCTCCATGCAAGGTCGG
CCCGTCTTTGTGGGCGCGCACGAGGAGGCAGCCGTCGCCACCGTGGGGGG
CCTGGAGCAGGGCTACGTGGTTTGTCCCTCCGAcaagcgcttcctccttc
tcttcaccTTTTTGAAGCGGAACAAGCAGAGGAAGATCATGGTCTTCTTC
TCATCCTGCAACTCGGTCAAGTTCCATGCGGAGCTGCTCAACTACATCGA
CCTCCCCGTCATGGACATCCACGGCCGGCAGAAACAACAGCGTCGAACAA
CCACGTTTTTCCAGTTCTGCCGACAGGACAAAGGTATCTTGCTCTGTACG
GACGTTGCGGCCCGAGGCTTGGACATACCGGCCGTGGACTGGATCATCCA
GTATGACCCTCCAGACGACCCGCGTGAGTACATCCACCGTGTGGGCAGGA
CGGCGCGCGGGGCCGCGGGGAAAGGCCGTGCTTTGCTGTTCTTGACAGCA
GAGGAAGTGGGCTTTCTGAAGTACTTGCGCGCGGCCAAGGTTGCCCTGAA
CGAGTACGAGTTTCCGGAAAAGAAGGTGGCGAACGTCCAAGCCCAGTTGA
CCAAGCTGGTCGAGAAGAACTATTACCTGAACAAGTCCGCCCGGGATGCC
TATCGATCATACCTCCTAGCCTACGCGTCGCATTCGCACAAGGATATATT
TAACGTACACGAGCTCGATTTGCAAGCTGTGGCCCGCGCTTTCGGGTTCT
CGGTGCCCCCCCGCGTCGACATAAATCTAAGCAGCAAAGGTCCAAAAGGC
CGATTGAAAAACACACATAAGGACAAGCGATTTGGGAGTACCGGGCACAA
GTTTTCCGCCAACAATCCTTACGGAAGGCGCGAAGCGGGGGACTCGCGAC
AGTTCACGCGATGAATGTCAGCGTACTTTGTGAAGACAAAGCACGTTACG
ATGGTATATGTGGTACTCTCTATGGTAAATTTTCTGTGTCAGGCCTGTCC
ATCAAAAAGTTGTGGGCAACCTTTCACTGGAtcgacctctcccctccgAG
TCACTGCCCATGGCCACTCAAGCGACCCCTCACGTCTTCTCATGCCCGTG
ACTTGCGCATTCACAGGGCTGTACGTCATGGGTAAACATAAAAAgctgct
gcagcagcagcgacagcacCAGAAAAAAGTAGCCAAAGTAACCAAAACGC
TGACGCAACCCAAGGTCAAGGCCTCAAACAAAGCGCAGCGCAAGGAGCTT
GAGGCCCGGATGGCCCGATGGACAaaagagcagaaagaagaggccgCAAA
CAGACGGACTGAGGAAGAGTTGAATGAAGAGGAGTctgacggggaggaga
tgcaagAAAATGGTGTAATCGAAAGAAATCCGTCCGCCagtgaggagggg
gaggaggaagcagagggggaagtggacggggaggctGAAGATAATGGTTA
TGACGAGCAGCGCTCCCGTGTAAATACCAAACGCAAGCATCTACCCTCAT
CCTCCGAGGccaagaaggcgaggaagggcgtggacgaAAAAAGTGGAACG
GCATTGCCCGAAACGCCGCGTCCGGAAGCGGGctctggggaagggaaggg
cagtgggggcggggcgggaaaaaGCGGGGCCGTGTTCTTTGCCAACCAGC
CCTTTGAGGACCTGCCAATATCGGACGCGACCAAATGCGCCCTCAAGAGG
CTCCGGTTCGTGAACATGACGCACATCCAGTCCCTGgcgatcccccccct
cttggCTGGCAAGGATGTGGTGGCCGCGGCGAAGACCGGGTCGGGTAAGa
cgctcgccttcctcgtcccggtCGTCGAGCTCCTTTCCAAGGTGAAATGG
GCGGCTCGGAACGGGACGGGTGCGATCATCATCTCCCCGACGCGCGAGCT
CTCCATGCAGATCTACGGCGTGCTCCGCGACCTGTGCGATGAGGGGGGGC
ATCCCCTCACCCACGGGCTCATCATGGGCGGCGCCAACCGACGCGCCGAG
GCGGAGCGGCTGGTGAAGGGAGTGAGTATCCTGGTGGCAACGCCGGGCCG
GCTCCTGGACCACCTGCAGAACACGAAGGGGTTCTTGACCCGGAACCTGC
AGCTCTTGGTCATCGACGAAGCGGACCGCATCCTCGAGCAGGGcttcgag
gaggacatgcaCCAAATCATCAAGAGCCTACCCAAGCACAGGCAGACGAT
GCTTTTTAGCGCCACGCAGACCAAGAAAGTAGAGGACTTGACGCGGCTCT
CCATGCAAGGTCGGCCCGTCTTTGTGGGCGCGCACGAGGAGGCAGCCGTC
GCCACCGTGGGGGGCCTGGAGCAGGGCTACGTGGTTTGTCCCTCCGAcaa
gcgcttcctccttctcttcaccTTTTTGAAGCGGAACAAGCAGAGGAAGA
TCATGGTCTTCTTCTCATCCTGCAACTCGGTCAAGTTCCATGCGGAGCTG
CTCAACTACATCGACCTCCCCGTCATGGACATCCACGGCCGGCAGAAACA
ACAGCGTCGAACAACCACGTTTTTCCAGTTCTGCCGACAGGACAAAGGTA
TCTTGCTCTGTACGGACGTTGCGGCCCGAGGCTTGGACATACCGGCCGTG
GACTGGATCATCCAGTATGACCCTCCAGACGACCCGCGTGAGTACATCCA
CCGTGTGGGCAGGACGGCGCGCGGGGCCGCGGGGAAAGGCCGTGCTTTGC
TGTTCTTGACAGCAGAGGAAGTGGGCTTTCTGAAGTACTTGCGCGCGGCC
AAGGTTGCCCTGAACGAGTACGAGTTTCCGGAAAAGAAGGTGGCGAACGT
CCAAGCCCAGTTGACCAAGCTGGTCGAGAAGAACTATTACCTGAACAAGT
CCGCCCGGGATGCCTATCGATCATACCTCCTAGCCTACGCGTCGCATTCG
CACAAGGATATATTTAACGTACACGAGCTCGATTTGCAAGCTGTGGCCCG
CGCTTTCGGGTTCTCGGTGCCCCCCCGCGTCGACATAAATCTAAGCAGCA
AAGGTCCAAAAGGCCGATTGAAAAACACACATAAGGACAAGCGATTTGGG
AGTACCGGGCACAAGTTTTCCGCCAACAATCCTTACGGAAGGCGCGAAGC
GGGGGACTCGCGACAGTTCACGCGATGA

Synonyms

Publications